Strain Fitness in Shewanella amazonensis SB2B around Sama_0481

Experiment: Fusidic 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0480 and Sama_0481 are separated by 51 nucleotidesSama_0481 and Sama_0482 are separated by 148 nucleotides Sama_0480: Sama_0480 - hypothetical protein (RefSeq), at 591,059 to 592,219 _0480 Sama_0481: Sama_0481 - hypothetical protein (RefSeq), at 592,271 to 592,819 _0481 Sama_0482: Sama_0482 - PmbA protein (RefSeq), at 592,968 to 594,329 _0482 Position (kb) 592 593Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 591.304 kb on - strand, within Sama_0480at 591.304 kb on - strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.320 kb on + strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.321 kb on - strand, within Sama_0480at 591.322 kb on + strand, within Sama_0480at 591.323 kb on - strand, within Sama_0480at 591.370 kb on + strand, within Sama_0480at 591.391 kb on + strand, within Sama_0480at 591.410 kb on + strand, within Sama_0480at 591.410 kb on + strand, within Sama_0480at 591.411 kb on - strand, within Sama_0480at 591.429 kb on - strand, within Sama_0480at 591.440 kb on + strand, within Sama_0480at 591.475 kb on + strand, within Sama_0480at 591.508 kb on + strand, within Sama_0480at 591.508 kb on + strand, within Sama_0480at 591.508 kb on + strand, within Sama_0480at 591.509 kb on - strand, within Sama_0480at 591.509 kb on - strand, within Sama_0480at 591.584 kb on + strand, within Sama_0480at 591.584 kb on + strand, within Sama_0480at 591.584 kb on + strand, within Sama_0480at 591.585 kb on - strand, within Sama_0480at 591.611 kb on + strand, within Sama_0480at 591.611 kb on + strand, within Sama_0480at 591.612 kb on - strand, within Sama_0480at 591.612 kb on - strand, within Sama_0480at 591.694 kb on + strand, within Sama_0480at 591.695 kb on - strand, within Sama_0480at 591.738 kb on + strand, within Sama_0480at 591.738 kb on + strand, within Sama_0480at 591.738 kb on + strand, within Sama_0480at 591.738 kb on + strand, within Sama_0480at 591.739 kb on - strand, within Sama_0480at 591.739 kb on - strand, within Sama_0480at 591.739 kb on - strand, within Sama_0480at 591.739 kb on - strand, within Sama_0480at 591.745 kb on + strand, within Sama_0480at 591.767 kb on + strand, within Sama_0480at 591.767 kb on + strand, within Sama_0480at 591.767 kb on + strand, within Sama_0480at 591.768 kb on - strand, within Sama_0480at 591.768 kb on - strand, within Sama_0480at 591.768 kb on - strand, within Sama_0480at 591.768 kb on - strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.788 kb on + strand, within Sama_0480at 591.789 kb on - strand, within Sama_0480at 591.789 kb on - strand, within Sama_0480at 591.789 kb on - strand, within Sama_0480at 591.789 kb on - strand, within Sama_0480at 591.789 kb on - strand, within Sama_0480at 591.789 kb on - strand, within Sama_0480at 591.790 kb on + strand, within Sama_0480at 591.804 kb on - strand, within Sama_0480at 591.812 kb on + strand, within Sama_0480at 591.813 kb on - strand, within Sama_0480at 591.869 kb on + strand, within Sama_0480at 591.869 kb on + strand, within Sama_0480at 591.870 kb on - strand, within Sama_0480at 591.870 kb on - strand, within Sama_0480at 591.925 kb on + strand, within Sama_0480at 591.925 kb on + strand, within Sama_0480at 591.926 kb on - strand, within Sama_0480at 591.963 kb on + strand, within Sama_0480at 592.060 kb on + strand, within Sama_0480at 592.060 kb on + strand, within Sama_0480at 592.142 kb on + strandat 592.143 kb on - strandat 592.143 kb on - strandat 592.285 kb on + strandat 592.285 kb on + strandat 592.286 kb on - strandat 592.286 kb on - strandat 592.286 kb on - strandat 592.300 kb on - strandat 592.300 kb on - strandat 592.542 kb on - strand, within Sama_0481at 592.562 kb on - strand, within Sama_0481at 592.579 kb on + strand, within Sama_0481at 592.580 kb on - strand, within Sama_0481at 592.580 kb on - strand, within Sama_0481at 592.761 kb on + strand, within Sama_0481at 592.779 kb on + strandat 592.780 kb on - strandat 592.780 kb on - strandat 592.837 kb on - strandat 592.862 kb on + strandat 592.862 kb on + strandat 592.862 kb on + strandat 592.863 kb on - strandat 592.863 kb on - strandat 592.863 kb on - strandat 592.863 kb on - strandat 592.863 kb on - strandat 592.947 kb on + strandat 592.947 kb on + strandat 592.947 kb on + strandat 592.948 kb on - strandat 592.948 kb on - strandat 592.954 kb on - strandat 593.156 kb on + strand, within Sama_0482at 593.224 kb on + strand, within Sama_0482at 593.251 kb on + strand, within Sama_0482at 593.252 kb on - strand, within Sama_0482at 593.267 kb on + strand, within Sama_0482at 593.268 kb on - strand, within Sama_0482at 593.277 kb on + strand, within Sama_0482at 593.277 kb on + strand, within Sama_0482at 593.277 kb on + strand, within Sama_0482at 593.278 kb on - strand, within Sama_0482at 593.278 kb on - strand, within Sama_0482at 593.279 kb on + strand, within Sama_0482at 593.280 kb on - strand, within Sama_0482at 593.297 kb on + strand, within Sama_0482at 593.328 kb on - strand, within Sama_0482at 593.352 kb on + strand, within Sama_0482at 593.352 kb on + strand, within Sama_0482at 593.352 kb on + strand, within Sama_0482at 593.353 kb on - strand, within Sama_0482at 593.353 kb on - strand, within Sama_0482at 593.487 kb on + strand, within Sama_0482at 593.487 kb on + strand, within Sama_0482at 593.487 kb on + strand, within Sama_0482at 593.487 kb on + strand, within Sama_0482at 593.487 kb on + strand, within Sama_0482at 593.487 kb on + strand, within Sama_0482at 593.517 kb on + strand, within Sama_0482at 593.518 kb on - strand, within Sama_0482at 593.532 kb on + strand, within Sama_0482at 593.533 kb on - strand, within Sama_0482at 593.533 kb on - strand, within Sama_0482at 593.533 kb on - strand, within Sama_0482at 593.539 kb on + strand, within Sama_0482at 593.539 kb on + strand, within Sama_0482at 593.539 kb on + strand, within Sama_0482at 593.589 kb on + strand, within Sama_0482at 593.596 kb on - strand, within Sama_0482at 593.613 kb on + strand, within Sama_0482at 593.613 kb on + strand, within Sama_0482at 593.614 kb on - strand, within Sama_0482at 593.614 kb on - strand, within Sama_0482at 593.614 kb on - strand, within Sama_0482at 593.669 kb on - strand, within Sama_0482at 593.702 kb on + strand, within Sama_0482at 593.702 kb on + strand, within Sama_0482at 593.702 kb on + strand, within Sama_0482at 593.702 kb on + strand, within Sama_0482at 593.703 kb on - strand, within Sama_0482at 593.703 kb on - strand, within Sama_0482at 593.703 kb on - strand, within Sama_0482at 593.756 kb on + strand, within Sama_0482at 593.757 kb on - strand, within Sama_0482at 593.757 kb on - strand, within Sama_0482at 593.757 kb on - strand, within Sama_0482at 593.757 kb on - strand, within Sama_0482at 593.784 kb on + strand, within Sama_0482at 593.784 kb on + strand, within Sama_0482

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml
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591,304 - Sama_0480 0.21 -1.0
591,304 - Sama_0480 0.21 -0.4
591,320 + Sama_0480 0.22 -0.6
591,320 + Sama_0480 0.22 -0.2
591,320 + Sama_0480 0.22 -0.1
591,320 + Sama_0480 0.22 -0.7
591,320 + Sama_0480 0.22 -1.0
591,320 + Sama_0480 0.22 -0.5
591,320 + Sama_0480 0.22 -0.3
591,321 - Sama_0480 0.23 +0.9
591,321 - Sama_0480 0.23 -1.7
591,321 - Sama_0480 0.23 +1.5
591,321 - Sama_0480 0.23 -1.0
591,321 - Sama_0480 0.23 +0.4
591,321 - Sama_0480 0.23 -0.4
591,321 - Sama_0480 0.23 -1.0
591,321 - Sama_0480 0.23 -0.6
591,321 - Sama_0480 0.23 +0.5
591,322 + Sama_0480 0.23 +0.4
591,323 - Sama_0480 0.23 +0.2
591,370 + Sama_0480 0.27 -1.4
591,391 + Sama_0480 0.29 -0.4
591,410 + Sama_0480 0.30 -1.2
591,410 + Sama_0480 0.30 -1.1
591,411 - Sama_0480 0.30 -0.6
591,429 - Sama_0480 0.32 +2.2
591,440 + Sama_0480 0.33 +0.1
591,475 + Sama_0480 0.36 -0.3
591,508 + Sama_0480 0.39 -0.6
591,508 + Sama_0480 0.39 +0.4
591,508 + Sama_0480 0.39 -1.9
591,509 - Sama_0480 0.39 -1.9
591,509 - Sama_0480 0.39 +0.3
591,584 + Sama_0480 0.45 +0.3
591,584 + Sama_0480 0.45 -0.1
591,584 + Sama_0480 0.45 +0.8
591,585 - Sama_0480 0.45 -1.3
591,611 + Sama_0480 0.48 +0.5
591,611 + Sama_0480 0.48 -0.1
591,612 - Sama_0480 0.48 +1.3
591,612 - Sama_0480 0.48 -0.4
591,694 + Sama_0480 0.55 -1.5
591,695 - Sama_0480 0.55 +0.4
591,738 + Sama_0480 0.58 -0.4
591,738 + Sama_0480 0.58 -0.1
591,738 + Sama_0480 0.58 -0.1
591,738 + Sama_0480 0.58 -1.4
591,739 - Sama_0480 0.59 +0.9
591,739 - Sama_0480 0.59 -0.7
591,739 - Sama_0480 0.59 -0.4
591,739 - Sama_0480 0.59 -1.7
591,745 + Sama_0480 0.59 +0.4
591,767 + Sama_0480 0.61 -0.9
591,767 + Sama_0480 0.61 -0.2
591,767 + Sama_0480 0.61 +0.0
591,768 - Sama_0480 0.61 +0.8
591,768 - Sama_0480 0.61 +1.2
591,768 - Sama_0480 0.61 -0.5
591,768 - Sama_0480 0.61 -0.9
591,788 + Sama_0480 0.63 +1.2
591,788 + Sama_0480 0.63 +0.0
591,788 + Sama_0480 0.63 +0.2
591,788 + Sama_0480 0.63 -0.1
591,788 + Sama_0480 0.63 +0.7
591,788 + Sama_0480 0.63 -2.1
591,788 + Sama_0480 0.63 -1.1
591,789 - Sama_0480 0.63 -0.7
591,789 - Sama_0480 0.63 -0.1
591,789 - Sama_0480 0.63 -1.3
591,789 - Sama_0480 0.63 -0.7
591,789 - Sama_0480 0.63 +1.5
591,789 - Sama_0480 0.63 +0.5
591,790 + Sama_0480 0.63 -0.5
591,804 - Sama_0480 0.64 -0.1
591,812 + Sama_0480 0.65 +0.5
591,813 - Sama_0480 0.65 -0.5
591,869 + Sama_0480 0.70 +0.8
591,869 + Sama_0480 0.70 +0.8
591,870 - Sama_0480 0.70 +0.0
591,870 - Sama_0480 0.70 -0.8
591,925 + Sama_0480 0.75 -0.5
591,925 + Sama_0480 0.75 -0.2
591,926 - Sama_0480 0.75 +1.5
591,963 + Sama_0480 0.78 -0.4
592,060 + Sama_0480 0.86 +0.3
592,060 + Sama_0480 0.86 +0.0
592,142 + -0.6
592,143 - -2.3
592,143 - +1.0
592,285 + +1.4
592,285 + -0.1
592,286 - -2.2
592,286 - -0.6
592,286 - +0.5
592,300 - +0.4
592,300 - +0.5
592,542 - Sama_0481 0.49 +0.8
592,562 - Sama_0481 0.53 -1.0
592,579 + Sama_0481 0.56 -1.2
592,580 - Sama_0481 0.56 -1.3
592,580 - Sama_0481 0.56 -0.8
592,761 + Sama_0481 0.89 -0.5
592,779 + +3.1
592,780 - +0.5
592,780 - -0.7
592,837 - -0.0
592,862 + -1.8
592,862 + -1.5
592,862 + +0.6
592,863 - +1.9
592,863 - +2.1
592,863 - -1.2
592,863 - -0.4
592,863 - -0.6
592,947 + -0.2
592,947 + +1.7
592,947 + -0.4
592,948 - -0.8
592,948 - +0.5
592,954 - +0.1
593,156 + Sama_0482 0.14 -1.3
593,224 + Sama_0482 0.19 -0.0
593,251 + Sama_0482 0.21 -1.1
593,252 - Sama_0482 0.21 -1.2
593,267 + Sama_0482 0.22 +0.5
593,268 - Sama_0482 0.22 +0.4
593,277 + Sama_0482 0.23 +1.1
593,277 + Sama_0482 0.23 +0.8
593,277 + Sama_0482 0.23 +0.9
593,278 - Sama_0482 0.23 +0.7
593,278 - Sama_0482 0.23 +1.2
593,279 + Sama_0482 0.23 +1.6
593,280 - Sama_0482 0.23 +0.2
593,297 + Sama_0482 0.24 -0.6
593,328 - Sama_0482 0.26 -0.0
593,352 + Sama_0482 0.28 +0.3
593,352 + Sama_0482 0.28 +1.3
593,352 + Sama_0482 0.28 +1.1
593,353 - Sama_0482 0.28 +0.9
593,353 - Sama_0482 0.28 +1.0
593,487 + Sama_0482 0.38 +0.1
593,487 + Sama_0482 0.38 +0.5
593,487 + Sama_0482 0.38 -0.2
593,487 + Sama_0482 0.38 +1.0
593,487 + Sama_0482 0.38 +1.6
593,487 + Sama_0482 0.38 +1.8
593,517 + Sama_0482 0.40 +0.1
593,518 - Sama_0482 0.40 -0.3
593,532 + Sama_0482 0.41 -0.9
593,533 - Sama_0482 0.41 +0.3
593,533 - Sama_0482 0.41 -1.7
593,533 - Sama_0482 0.41 +0.5
593,539 + Sama_0482 0.42 +1.4
593,539 + Sama_0482 0.42 +0.3
593,539 + Sama_0482 0.42 +0.0
593,589 + Sama_0482 0.46 -0.3
593,596 - Sama_0482 0.46 -0.3
593,613 + Sama_0482 0.47 +0.7
593,613 + Sama_0482 0.47 -0.9
593,614 - Sama_0482 0.47 -1.1
593,614 - Sama_0482 0.47 -0.7
593,614 - Sama_0482 0.47 +0.4
593,669 - Sama_0482 0.51 -0.6
593,702 + Sama_0482 0.54 +0.9
593,702 + Sama_0482 0.54 +0.8
593,702 + Sama_0482 0.54 +0.3
593,702 + Sama_0482 0.54 +0.8
593,703 - Sama_0482 0.54 +0.4
593,703 - Sama_0482 0.54 +2.2
593,703 - Sama_0482 0.54 +0.2
593,756 + Sama_0482 0.58 +0.4
593,757 - Sama_0482 0.58 -0.0
593,757 - Sama_0482 0.58 +2.8
593,757 - Sama_0482 0.58 +4.1
593,757 - Sama_0482 0.58 +1.4
593,784 + Sama_0482 0.60 -0.7
593,784 + Sama_0482 0.60 +0.5

Or see this region's nucleotide sequence