Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aceF and Sama_0377 are separated by 170 nucleotides Sama_0377 and Sama_0378 are separated by 150 nucleotides
Sama_0376: aceF - dihydrolipoamide acetyltransferase (RefSeq), at 456,531 to 458,459
aceF
Sama_0377: Sama_0377 - dihydrolipoamide dehydrogenase (RefSeq), at 458,630 to 460,060
_0377
Sama_0378: Sama_0378 - sensory box protein (RefSeq), at 460,211 to 464,686
_0378
Position (kb) 458
459
460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8
9 at 457.641 kb on + strand, within aceF at 457.642 kb on - strand, within aceF at 457.820 kb on + strand, within aceF at 458.043 kb on + strand, within aceF at 458.044 kb on - strand, within aceF at 458.044 kb on - strand, within aceF at 458.124 kb on + strand, within aceF at 458.124 kb on + strand, within aceF at 458.124 kb on + strand, within aceF at 458.180 kb on + strand, within aceF at 458.210 kb on + strand, within aceF at 458.211 kb on - strand, within aceF at 458.415 kb on + strand at 458.416 kb on - strand at 458.416 kb on - strand at 458.429 kb on - strand at 458.440 kb on + strand at 458.440 kb on + strand at 458.464 kb on - strand at 458.479 kb on + strand at 458.479 kb on + strand at 458.480 kb on - strand at 458.493 kb on + strand at 458.493 kb on + strand at 458.494 kb on - strand at 458.519 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.535 kb on + strand at 458.549 kb on + strand at 458.549 kb on + strand at 458.558 kb on + strand at 460.139 kb on + strand at 460.165 kb on - strand at 460.165 kb on - strand at 460.165 kb on - strand at 460.165 kb on - strand at 460.203 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.210 kb on + strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.211 kb on - strand at 460.246 kb on - strand at 460.246 kb on - strand at 460.343 kb on - strand at 460.343 kb on - strand at 460.364 kb on + strand at 460.412 kb on - strand at 460.412 kb on - strand at 460.432 kb on - strand at 460.432 kb on - strand at 460.459 kb on + strand at 460.460 kb on - strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.469 kb on + strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.470 kb on - strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.473 kb on + strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.474 kb on - strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.502 kb on + strand at 460.503 kb on - strand at 460.503 kb on - strand at 460.518 kb on + strand at 460.518 kb on + strand at 460.519 kb on - strand at 460.519 kb on - strand at 460.519 kb on - strand at 460.532 kb on + strand at 460.539 kb on - strand at 460.543 kb on + strand at 460.543 kb on + strand at 460.544 kb on - strand at 460.544 kb on - strand at 460.544 kb on - strand at 460.555 kb on + strand at 460.555 kb on + strand at 460.555 kb on + strand at 460.555 kb on + strand at 460.556 kb on - strand at 460.556 kb on - strand at 460.556 kb on - strand at 460.556 kb on - strand at 460.585 kb on - strand at 460.585 kb on - strand at 460.596 kb on - strand at 460.612 kb on + strand at 460.711 kb on + strand, within Sama_0378 at 460.711 kb on + strand, within Sama_0378 at 460.711 kb on + strand, within Sama_0378 at 460.737 kb on + strand, within Sama_0378 at 460.737 kb on + strand, within Sama_0378 at 460.737 kb on + strand, within Sama_0378 at 460.738 kb on - strand, within Sama_0378 at 460.738 kb on - strand, within Sama_0378 at 460.738 kb on - strand, within Sama_0378 at 460.757 kb on + strand, within Sama_0378 at 460.757 kb on + strand, within Sama_0378 at 460.758 kb on - strand, within Sama_0378 at 460.786 kb on + strand, within Sama_0378 at 460.786 kb on + strand, within Sama_0378 at 460.786 kb on + strand, within Sama_0378 at 460.787 kb on - strand, within Sama_0378 at 460.839 kb on + strand, within Sama_0378 at 460.839 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.979 kb on + strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.980 kb on - strand, within Sama_0378 at 460.993 kb on + strand, within Sama_0378 at 461.011 kb on + strand, within Sama_0378 at 461.029 kb on + strand, within Sama_0378 at 461.030 kb on - strand, within Sama_0378
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 457,641 + aceF Sama_0376 0.58 +9.0 457,642 - aceF Sama_0376 0.58 +6.5 457,820 + aceF Sama_0376 0.67 +8.8 458,043 + aceF Sama_0376 0.78 +9.0 458,044 - aceF Sama_0376 0.78 +8.0 458,044 - aceF Sama_0376 0.78 +8.9 458,124 + aceF Sama_0376 0.83 +9.1 458,124 + aceF Sama_0376 0.83 +8.5 458,124 + aceF Sama_0376 0.83 +8.2 458,180 + aceF Sama_0376 0.85 +8.0 458,210 + aceF Sama_0376 0.87 +8.5 458,211 - aceF Sama_0376 0.87 +8.4 458,415 + +9.2 458,416 - +8.9 458,416 - +8.6 458,429 - +7.9 458,440 + +6.1 458,440 + +6.6 458,464 - +5.1 458,479 + +5.1 458,479 + +3.1 458,480 - +5.9 458,493 + -0.9 458,493 + +0.7 458,494 - +0.5 458,519 + -0.4 458,535 + +0.3 458,535 + -0.9 458,535 + -0.9 458,535 + -0.0 458,535 + +0.9 458,549 + +0.1 458,549 + -1.7 458,558 + -0.2 460,139 + +2.1 460,165 - -1.6 460,165 - -1.5 460,165 - +1.6 460,165 - +0.0 460,203 + +0.1 460,210 + +0.0 460,210 + +0.6 460,210 + +0.4 460,210 + +0.1 460,210 + +1.7 460,210 + -1.3 460,210 + +0.1 460,210 + +0.6 460,210 + +0.6 460,210 + -0.6 460,210 + -0.3 460,210 + -0.0 460,211 - -0.9 460,211 - -1.4 460,211 - -1.0 460,211 - +0.8 460,211 - -0.8 460,211 - -2.1 460,211 - -0.9 460,211 - -0.2 460,211 - -0.1 460,211 - +0.3 460,246 - -0.5 460,246 - -2.0 460,343 - +0.0 460,343 - +0.1 460,364 + +0.4 460,412 - -1.1 460,412 - -0.6 460,432 - -1.3 460,432 - -1.0 460,459 + -1.0 460,460 - -0.4 460,469 + +0.7 460,469 + +0.6 460,469 + +0.2 460,469 + +1.5 460,469 + +0.9 460,469 + +0.3 460,469 + +1.3 460,469 + +0.8 460,469 + +0.2 460,469 + +0.9 460,470 - +0.4 460,470 - -1.4 460,470 - -0.0 460,470 - +0.1 460,470 - -2.1 460,470 - +1.1 460,470 - -1.4 460,470 - +1.3 460,470 - +0.0 460,470 - -1.6 460,470 - -1.6 460,473 + +1.8 460,473 + +1.4 460,473 + +0.8 460,473 + +0.1 460,473 + -0.4 460,473 + -1.0 460,473 + +0.1 460,473 + -0.9 460,473 + -0.7 460,473 + -0.3 460,474 - +0.7 460,474 - -0.7 460,474 - +0.3 460,474 - -0.9 460,474 - +1.8 460,474 - -1.2 460,474 - +0.8 460,502 + +0.3 460,502 + -1.1 460,502 + +2.1 460,502 + +0.1 460,502 + -0.9 460,503 - -0.6 460,503 - +1.0 460,518 + +0.2 460,518 + -1.4 460,519 - -0.4 460,519 - -2.4 460,519 - -0.2 460,532 + -0.0 460,539 - +0.1 460,543 + +0.9 460,543 + -1.1 460,544 - -0.9 460,544 - -0.3 460,544 - +1.4 460,555 + +0.1 460,555 + -0.2 460,555 + -0.0 460,555 + -1.1 460,556 - -1.6 460,556 - -1.4 460,556 - -2.4 460,556 - -0.3 460,585 - -0.1 460,585 - -1.0 460,596 - -1.1 460,612 + -1.0 460,711 + Sama_0378 0.11 -0.8 460,711 + Sama_0378 0.11 -0.4 460,711 + Sama_0378 0.11 -0.7 460,737 + Sama_0378 0.12 +0.1 460,737 + Sama_0378 0.12 +0.0 460,737 + Sama_0378 0.12 -0.2 460,738 - Sama_0378 0.12 -0.5 460,738 - Sama_0378 0.12 -0.0 460,738 - Sama_0378 0.12 +0.3 460,757 + Sama_0378 0.12 +0.1 460,757 + Sama_0378 0.12 +0.2 460,758 - Sama_0378 0.12 +0.1 460,786 + Sama_0378 0.13 +1.1 460,786 + Sama_0378 0.13 -0.7 460,786 + Sama_0378 0.13 +1.0 460,787 - Sama_0378 0.13 -0.3 460,839 + Sama_0378 0.14 +0.7 460,839 + Sama_0378 0.14 -0.2 460,979 + Sama_0378 0.17 -0.3 460,979 + Sama_0378 0.17 -1.0 460,979 + Sama_0378 0.17 +2.1 460,979 + Sama_0378 0.17 +1.6 460,979 + Sama_0378 0.17 +2.9 460,980 - Sama_0378 0.17 -0.7 460,980 - Sama_0378 0.17 -0.7 460,980 - Sama_0378 0.17 +0.6 460,980 - Sama_0378 0.17 +0.4 460,980 - Sama_0378 0.17 -0.7 460,980 - Sama_0378 0.17 -0.7 460,980 - Sama_0378 0.17 -1.2 460,980 - Sama_0378 0.17 +2.3 460,980 - Sama_0378 0.17 +0.3 460,993 + Sama_0378 0.17 -0.7 461,011 + Sama_0378 0.18 -0.8 461,029 + Sama_0378 0.18 +2.1 461,030 - Sama_0378 0.18 +0.1
Or see this region's nucleotide sequence