Strain Fitness in Shewanella amazonensis SB2B around Sama_0370

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
446,985	+		Sama_0369	0.45	+0.6
446,986	-		Sama_0369	0.45	-0.9
446,986	-		Sama_0369	0.45	+0.3
447,056	-		Sama_0369	0.49	+0.1
447,062	+		Sama_0369	0.50	+0.1
447,063	-		Sama_0369	0.50	+0.8
447,063	-		Sama_0369	0.50	-0.6
447,063	-		Sama_0369	0.50	+0.8
447,063	-		Sama_0369	0.50	+1.0
447,063	-		Sama_0369	0.50	-2.1
447,094	+		Sama_0369	0.52	-0.3
447,094	+		Sama_0369	0.52	+0.1
447,094	+		Sama_0369	0.52	+1.0
447,095	-		Sama_0369	0.52	-2.1
447,098	+		Sama_0369	0.52	+0.3
447,099	-		Sama_0369	0.52	-1.3
447,140	+		Sama_0369	0.54	-0.7
447,198	-		Sama_0369	0.58	+0.1
447,198	-		Sama_0369	0.58	+1.2
447,198	-		Sama_0369	0.58	+0.2
447,198	-		Sama_0369	0.58	-1.0
447,265	+		Sama_0369	0.62	+0.9
447,294	+		Sama_0369	0.63	+0.3
447,295	-		Sama_0369	0.63	-0.9
447,331	+		Sama_0369	0.65	+0.9
447,331	+		Sama_0369	0.65	+0.6
447,332	-		Sama_0369	0.66	-0.9
447,332	-		Sama_0369	0.66	+0.1
447,332	-		Sama_0369	0.66	+1.0
447,355	+		Sama_0369	0.67	+0.4
447,355	+		Sama_0369	0.67	+2.9
447,356	-		Sama_0369	0.67	-1.2
447,356	-		Sama_0369	0.67	+1.3
447,357	+		Sama_0369	0.67	-1.3
447,357	+		Sama_0369	0.67	+0.6
447,357	+		Sama_0369	0.67	+1.2
447,357	+		Sama_0369	0.67	+0.8
447,357	+		Sama_0369	0.67	-0.9
447,357	+		Sama_0369	0.67	-0.2
447,357	+		Sama_0369	0.67	-1.5
447,358	-		Sama_0369	0.67	-1.7
447,358	-		Sama_0369	0.67	+0.3
447,358	-		Sama_0369	0.67	+0.5
447,358	-		Sama_0369	0.67	-1.0
447,358	-		Sama_0369	0.67	+0.0
447,358	-		Sama_0369	0.67	+0.8
447,358	-		Sama_0369	0.67	-1.1
447,358	-		Sama_0369	0.67	-0.5
447,358	-		Sama_0369	0.67	-1.0
447,358	-		Sama_0369	0.67	+0.1
447,361	+		Sama_0369	0.67	-2.0
447,361	+		Sama_0369	0.67	+0.3
447,361	+		Sama_0369	0.67	+0.8
447,362	-		Sama_0369	0.67	-1.8
447,362	-		Sama_0369	0.67	+0.1
447,362	-		Sama_0369	0.67	+0.8
447,362	-		Sama_0369	0.67	+0.3
447,365	+		Sama_0369	0.67	+0.3
447,365	+		Sama_0369	0.67	-0.3
447,365	+		Sama_0369	0.67	+0.1
447,365	+		Sama_0369	0.67	-1.5
447,365	+		Sama_0369	0.67	+0.6
447,365	+		Sama_0369	0.67	+0.8
447,365	+		Sama_0369	0.67	-0.6
447,365	+		Sama_0369	0.67	-0.8
447,366	-		Sama_0369	0.68	-1.0
447,366	-		Sama_0369	0.68	+1.1
447,366	-		Sama_0369	0.68	-1.7
447,391	+		Sama_0369	0.69	-0.9
447,392	-		Sama_0369	0.69	-0.2
447,421	+		Sama_0369	0.71	-0.5
447,422	-		Sama_0369	0.71	-0.6
447,517	+		Sama_0369	0.76	+0.1
447,517	+		Sama_0369	0.76	+0.7
447,536	-		Sama_0369	0.78	-0.1
447,536	-		Sama_0369	0.78	+0.4
447,604	+		Sama_0369	0.81	+0.1
447,604	+		Sama_0369	0.81	+0.3
447,604	+		Sama_0369	0.81	-1.1
447,604	+		Sama_0369	0.81	+0.8
447,604	+		Sama_0369	0.81	-1.5
447,604	+		Sama_0369	0.81	-0.2
447,604	+		Sama_0369	0.81	-1.8
447,604	+		Sama_0369	0.81	+0.7
447,604	+		Sama_0369	0.81	+0.7
447,605	-		Sama_0369	0.82	-1.2
447,605	-		Sama_0369	0.82	-2.5
447,605	-		Sama_0369	0.82	-1.7
447,605	-		Sama_0369	0.82	-0.2
447,605	-		Sama_0369	0.82	-0.5
447,605	-		Sama_0369	0.82	-0.2
447,605	-		Sama_0369	0.82	+1.3
447,605	-		Sama_0369	0.82	+1.1
447,605	-		Sama_0369	0.82	+0.5
447,608	+		Sama_0369	0.82	+0.1
447,608	+		Sama_0369	0.82	+0.5
447,608	+		Sama_0369	0.82	+0.5
447,608	+		Sama_0369	0.82	-0.0
447,608	+		Sama_0369	0.82	-0.3
447,608	+		Sama_0369	0.82	+0.8
447,608	+		Sama_0369	0.82	-1.0
447,608	+		Sama_0369	0.82	-1.5
447,608	+		Sama_0369	0.82	+1.1
447,608	+		Sama_0369	0.82	-1.9
447,608	+		Sama_0369	0.82	-1.5
447,608	+		Sama_0369	0.82	+0.5
447,608	+		Sama_0369	0.82	+0.7
447,608	+		Sama_0369	0.82	-1.3
447,608	+		Sama_0369	0.82	-1.2
447,608	+		Sama_0369	0.82	+1.3
447,608	+		Sama_0369	0.82	-2.5
447,608	+		Sama_0369	0.82	+0.3
447,609	-		Sama_0369	0.82	+0.3
447,609	-		Sama_0369	0.82	+1.5
447,609	-		Sama_0369	0.82	+0.1
447,609	-		Sama_0369	0.82	-0.7
447,609	-		Sama_0369	0.82	-0.7
447,609	-		Sama_0369	0.82	+0.5
447,609	-		Sama_0369	0.82	-1.4
447,609	-		Sama_0369	0.82	+1.1
447,609	-		Sama_0369	0.82	+0.0
447,609	-		Sama_0369	0.82	+1.1
447,609	-		Sama_0369	0.82	-1.0
447,609	-		Sama_0369	0.82	-0.2
447,609	-		Sama_0369	0.82	+0.1
447,609	-		Sama_0369	0.82	-0.7
447,609	-		Sama_0369	0.82	+0.2
447,609	-		Sama_0369	0.82	+0.1
447,609	-		Sama_0369	0.82	-0.2
447,609	-		Sama_0369	0.82	+0.1
447,609	-		Sama_0369	0.82	-0.8
447,610	+		Sama_0369	0.82	-1.3
447,610	+		Sama_0369	0.82	+0.1
447,610	+		Sama_0369	0.82	+0.7
447,610	+		Sama_0369	0.82	-0.0
447,610	+		Sama_0369	0.82	+1.0
447,610	+		Sama_0369	0.82	-0.7
447,610	+		Sama_0369	0.82	-1.3
447,610	+		Sama_0369	0.82	+0.5
447,610	+		Sama_0369	0.82	-0.4
447,611	-		Sama_0369	0.82	+0.9
447,611	-		Sama_0369	0.82	+0.5
447,611	-		Sama_0369	0.82	+1.5
447,611	-		Sama_0369	0.82	-1.6
447,611	-		Sama_0369	0.82	-0.8
447,612	+		Sama_0369	0.82	+0.3
447,612	+		Sama_0369	0.82	+0.1
447,612	+		Sama_0369	0.82	+0.1
447,612	+		Sama_0369	0.82	-0.5
447,612	+		Sama_0369	0.82	+1.3
447,612	+		Sama_0369	0.82	-1.8
447,612	+		Sama_0369	0.82	+0.8
447,612	+		Sama_0369	0.82	+2.1
447,612	+		Sama_0369	0.82	+0.0
447,612	+		Sama_0369	0.82	+1.0
447,612	+		Sama_0369	0.82	+0.5
447,612	+		Sama_0369	0.82	+0.7
447,612	+		Sama_0369	0.82	-0.5
447,612	+		Sama_0369	0.82	-0.4
447,612	+		Sama_0369	0.82	-0.1
447,612	+		Sama_0369	0.82	+0.7
447,613	-		Sama_0369	0.82	+2.4
447,613	-		Sama_0369	0.82	-2.0
447,613	-		Sama_0369	0.82	-0.7
447,613	-		Sama_0369	0.82	-0.9
447,613	-		Sama_0369	0.82	-0.5
447,613	-		Sama_0369	0.82	+2.1
447,613	-		Sama_0369	0.82	+0.3
447,613	-		Sama_0369	0.82	-0.9
447,613	-		Sama_0369	0.82	-0.5
447,631	+		Sama_0369	0.83	+1.3
447,631	+		Sama_0369	0.83	+1.3
447,736	-		Sama_0369	0.89	-0.9
447,744	+		Sama_0369	0.90	-0.6
447,745	-		Sama_0369	0.90	+0.3
447,773	+				+1.8
447,773	+				+1.3
447,773	+				+0.5
447,773	+				-0.1
447,773	+				-2.4
447,773	+				-0.9
447,773	+				-0.2
447,774	-				+0.4
447,774	-				-0.5
447,774	-				+0.0
447,776	+				-0.1
447,776	+				+1.3
447,776	+				-0.9
447,777	-				+0.0
447,777	-				-1.3
447,777	-				-1.7
447,777	-				-2.0
447,777	-				-0.9
447,777	-				-0.2
447,777	-				+1.0
447,781	+				+1.1
447,781	+				+0.1
447,782	-				+2.1
447,782	-				-1.1
447,782	-				-1.6
447,782	-				-0.5
447,782	-				+0.7
447,796	+				+2.7
447,797	-				-1.3
447,797	-				-1.0
447,833	+				+0.5
447,871	+				-1.7
447,871	+				-1.4
447,871	+				+1.3
447,872	-				-0.5
447,872	-				-0.7
447,896	+				-1.3
447,896	+				-1.0
447,896	+				+1.2
447,897	-				-0.0
447,897	-				+1.1
447,897	-				-0.1
447,920	+				-0.6
447,921	-				+1.0
447,921	-				+0.8
447,921	-				+0.0
447,921	-				+2.0
447,931	+				-0.3
447,932	-				+0.1
447,964	-				-0.4
447,974	+				+0.3
447,993	+				-0.0
447,993	+				+0.4
447,994	-				+0.3
447,994	-				+0.1
447,999	+				+2.1
447,999	+				-0.9
447,999	+				+1.5
448,000	-				-0.1
448,000	-				+1.0
448,020	+				-0.5
448,020	+				+0.3
448,049	-		Sama_0370	0.16	-0.1
448,049	-		Sama_0370	0.16	+0.2
448,055	+		Sama_0370	0.17	-1.0
448,055	+		Sama_0370	0.17	+0.5
448,055	+		Sama_0370	0.17	+1.1
448,055	+		Sama_0370	0.17	+0.5
448,055	+		Sama_0370	0.17	-0.3
448,055	+		Sama_0370	0.17	+0.3
448,055	+		Sama_0370	0.17	+1.1
448,056	-		Sama_0370	0.18	+0.3
448,056	-		Sama_0370	0.18	-1.1
448,056	-		Sama_0370	0.18	+1.4
448,056	-		Sama_0370	0.18	-0.2
448,056	-		Sama_0370	0.18	+1.3
448,056	-		Sama_0370	0.18	+0.8
448,061	+		Sama_0370	0.19	-0.3
448,062	-		Sama_0370	0.19	-0.3
448,062	-		Sama_0370	0.19	+0.2
448,062	-		Sama_0370	0.19	+0.4
448,062	-		Sama_0370	0.19	-0.3
448,062	-		Sama_0370	0.19	+2.5
448,062	-		Sama_0370	0.19	+2.8
448,110	+		Sama_0370	0.29	+2.4
448,111	-		Sama_0370	0.29	-0.0
448,111	-		Sama_0370	0.29	+0.3
448,162	+		Sama_0370	0.40	-0.2
448,163	-		Sama_0370	0.40	+0.4
448,163	-		Sama_0370	0.40	+1.1
448,163	-		Sama_0370	0.40	-0.0
448,163	-		Sama_0370	0.40	+1.0
448,163	-		Sama_0370	0.40	+2.2
448,184	-		Sama_0370	0.45	+1.4
448,184	-		Sama_0370	0.45	-0.4
448,192	+		Sama_0370	0.46	+1.0
448,193	-		Sama_0370	0.46	-1.9
448,195	+		Sama_0370	0.47	-0.5
448,195	+		Sama_0370	0.47	+1.8
448,195	+		Sama_0370	0.47	+0.3
448,196	-		Sama_0370	0.47	+2.5
448,196	-		Sama_0370	0.47	-0.9
448,196	-		Sama_0370	0.47	-1.3
448,196	-		Sama_0370	0.47	+0.1
448,196	-		Sama_0370	0.47	+0.6
448,200	+		Sama_0370	0.48	-0.2
448,200	+		Sama_0370	0.48	-0.3
448,200	+		Sama_0370	0.48	+1.7
448,200	+		Sama_0370	0.48	-0.0
448,200	+		Sama_0370	0.48	+1.7
448,200	+		Sama_0370	0.48	+0.4
448,200	+		Sama_0370	0.48	-0.5
448,201	-		Sama_0370	0.48	-0.9
448,201	-		Sama_0370	0.48	+0.3
448,201	-		Sama_0370	0.48	+0.4
448,201	-		Sama_0370	0.48	-0.3
448,201	-		Sama_0370	0.48	-1.7
448,201	-		Sama_0370	0.48	-0.1
448,201	-		Sama_0370	0.48	-0.3
448,201	-		Sama_0370	0.48	-0.3
448,201	-		Sama_0370	0.48	-1.0
448,201	-		Sama_0370	0.48	-0.8
448,219	-		Sama_0370	0.52	+1.0
448,219	-		Sama_0370	0.52	-2.0
448,245	+		Sama_0370	0.57	+1.6
448,245	+		Sama_0370	0.57	+1.1
448,246	-		Sama_0370	0.58	+0.7
448,246	-		Sama_0370	0.58	+1.1
448,246	-		Sama_0370	0.58	+1.5
448,246	-		Sama_0370	0.58	-0.5
448,246	-		Sama_0370	0.58	-0.3
448,246	-		Sama_0370	0.58	+1.2
448,246	-		Sama_0370	0.58	-0.2
448,246	-		Sama_0370	0.58	+1.8
448,246	-		Sama_0370	0.58	-1.5
448,246	-		Sama_0370	0.58	-0.7
448,270	+		Sama_0370	0.63	-0.8
448,271	-		Sama_0370	0.63	+1.7
448,271	-		Sama_0370	0.63	-1.0
448,271	-		Sama_0370	0.63	+0.8
448,331	+		Sama_0370	0.76	+0.3
448,332	-		Sama_0370	0.76	-1.5
448,341	-		Sama_0370	0.78	+1.9
448,369	-		Sama_0370	0.84	+0.7
448,381	+		Sama_0370	0.86	+2.1
448,382	-		Sama_0370	0.86	+1.3
448,382	-		Sama_0370	0.86	+0.3
448,382	-		Sama_0370	0.86	-0.5
448,384	+		Sama_0370	0.87	-0.9
448,385	-		Sama_0370	0.87	-0.5
448,385	-		Sama_0370	0.87	-1.0
448,385	-		Sama_0370	0.87	+2.1
448,438	-				+0.9
448,460	+				+1.0
448,460	+				+2.1
448,460	+				-0.2
448,461	-				-1.7
448,466	+				+1.0
448,466	+				+2.1
448,466	+				-0.1
448,466	+				-0.9
448,467	-				-0.6
448,467	-				+0.6
448,471	-				+0.8
448,518	+				+1.0
448,518	+				+1.1
448,519	-				+0.7
448,519	-				+0.4
448,524	+				+0.5
448,524	+				+1.5
448,524	+				+1.3
448,525	-				-0.4
448,525	-				+0.5
448,536	+				-0.0
448,536	+				+0.7
448,536	+				+2.8
448,537	-				-2.3
448,550	+				+0.0
448,551	-				-2.0
448,551	-				+2.1
448,564	+				-1.0
448,565	-				-0.0
448,590	+				-0.3
448,590	+				-0.5
448,591	-				-0.2
448,591	-				-1.0
448,591	-				+0.4
448,605	+				+2.0
448,605	+				-0.1
448,606	-				-0.0
448,606	-				-1.4
448,671	+				+1.1
448,672	-				+0.5
448,678	+				+0.8
448,679	-				-1.0
448,688	-				-0.0
448,694	-				+1.1
448,702	+				+0.1
448,703	-				-0.3
448,717	+				+0.1
448,718	-				-0.6
448,718	-				+1.1
448,721	+				-0.5
448,722	-				-0.5
448,722	-				+0.3
448,749	-				-0.5
448,749	-				-0.5
448,752	-				-0.8
448,752	-				+0.2
448,765	-				-0.3
448,807	+				+0.7
448,807	+				+0.4
448,808	-				-0.3
448,834	+				+0.2
448,835	-				+0.5
448,845	+				-0.2
448,879	-				+0.8
448,880	+				+1.5
448,880	+				+0.5
448,880	+				+1.1
448,892	+				+0.1
448,893	-				-1.1
448,933	+				+2.9
448,992	+				+3.0
448,993	-				+1.5
448,993	-				+0.3
449,024	+				-0.3
449,024	+				+0.3
449,024	+				+0.8
449,025	-				-1.7
449,025	-				+0.0
449,025	-				-0.8
449,025	-				-1.0
449,038	+				-0.2
449,038	+				+1.0
449,038	+				-1.2
449,038	+				+0.3
449,038	+				-0.9
449,038	+				+0.9
449,039	-				-2.0
449,039	-				+0.1
449,039	-				-0.6
449,039	-				-1.1
449,063	+				+0.5
449,064	-				+0.4
449,088	+				+0.5
449,089	-				-1.6
449,089	-				-2.2
449,089	-				-1.2
449,089	-				-0.3
449,094	-				-0.4
449,101	-				-2.0
449,110	-				+0.8
449,128	-				+1.5
449,166	+				-0.5
449,167	-				-0.2
449,167	-				-1.8
449,167	-				+0.5
449,167	-				-1.8
449,167	-				-1.0
449,167	-				-0.9
449,174	+				-0.7
449,192	+				+0.4
449,193	-				-1.9
449,233	+				+1.0
449,234	-				-0.7
449,234	-				-0.1
449,253	+				-1.0
449,253	+				-0.6
449,253	+				-0.8
449,253	+				-0.2
449,253	+				-0.9
449,254	-				-0.4
449,254	-				-0.8
449,254	-				-0.2
449,254	-				-0.7
449,254	-				+0.5
449,292	+				+0.5
449,292	+				-0.8
449,338	+				-1.4
449,399	+				-0.2
449,400	-				-2.1
449,400	-				-0.5
449,416	+				+1.8
449,417	-				+1.1
449,421	+				-0.2
449,421	+				-1.2
449,421	+				+0.3
449,421	+				-1.2
449,422	-				+1.5
449,422	-				-1.5
449,422	-				-0.1
449,445	+				-0.8