Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0319 and Sama_0320 are separated by 141 nucleotides Sama_0320 and pyrE are separated by 106 nucleotides pyrE and folE are separated by 101 nucleotides
Sama_0319: Sama_0319 - hypothetical protein (RefSeq), at 386,521 to 387,450
_0319
Sama_0320: Sama_0320 - tRNA nucleotidyltransferase (RefSeq), at 387,592 to 388,305
_0320
Sama_0321: pyrE - orotate phosphoribosyltransferase (RefSeq), at 388,412 to 389,053
pyrE
Sama_0322: folE - GTP cyclohydrolase I (RefSeq), at 389,155 to 389,805
folE
Position (kb) 387
388
389 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 386.652 kb on + strand, within Sama_0319 at 386.652 kb on + strand, within Sama_0319 at 386.653 kb on - strand, within Sama_0319 at 386.784 kb on + strand, within Sama_0319 at 387.039 kb on + strand, within Sama_0319 at 387.039 kb on + strand, within Sama_0319 at 387.058 kb on + strand, within Sama_0319 at 387.058 kb on + strand, within Sama_0319 at 387.058 kb on + strand, within Sama_0319 at 387.058 kb on + strand, within Sama_0319 at 387.058 kb on + strand, within Sama_0319 at 387.059 kb on - strand, within Sama_0319 at 387.059 kb on - strand, within Sama_0319 at 387.060 kb on + strand, within Sama_0319 at 387.060 kb on + strand, within Sama_0319 at 387.060 kb on + strand, within Sama_0319 at 387.060 kb on + strand, within Sama_0319 at 387.061 kb on - strand, within Sama_0319 at 387.061 kb on - strand, within Sama_0319 at 387.061 kb on - strand, within Sama_0319 at 387.061 kb on - strand, within Sama_0319 at 387.075 kb on + strand, within Sama_0319 at 387.076 kb on - strand, within Sama_0319 at 387.076 kb on - strand, within Sama_0319 at 387.183 kb on - strand, within Sama_0319 at 387.200 kb on - strand, within Sama_0319 at 387.226 kb on + strand, within Sama_0319 at 387.226 kb on + strand, within Sama_0319 at 387.226 kb on + strand, within Sama_0319 at 387.226 kb on + strand, within Sama_0319 at 387.226 kb on + strand, within Sama_0319 at 387.227 kb on - strand, within Sama_0319 at 387.281 kb on + strand, within Sama_0319 at 387.281 kb on + strand, within Sama_0319 at 387.281 kb on + strand, within Sama_0319 at 387.282 kb on - strand, within Sama_0319 at 387.282 kb on - strand, within Sama_0319 at 387.282 kb on - strand, within Sama_0319 at 387.282 kb on - strand, within Sama_0319 at 387.282 kb on - strand, within Sama_0319 at 387.294 kb on - strand, within Sama_0319 at 387.345 kb on + strand, within Sama_0319 at 387.345 kb on + strand, within Sama_0319 at 387.345 kb on + strand, within Sama_0319 at 387.346 kb on - strand, within Sama_0319 at 387.346 kb on - strand, within Sama_0319 at 387.346 kb on - strand, within Sama_0319 at 387.384 kb on + strand at 387.408 kb on + strand at 387.409 kb on - strand at 387.424 kb on + strand at 387.424 kb on + strand at 387.424 kb on + strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.425 kb on - strand at 387.426 kb on + strand at 387.426 kb on + strand at 387.426 kb on + strand at 387.427 kb on - strand at 387.476 kb on + strand at 387.489 kb on + strand at 387.490 kb on - strand at 387.536 kb on + strand at 387.537 kb on - strand at 387.537 kb on - strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.542 kb on + strand at 387.543 kb on - strand at 387.543 kb on - strand at 387.543 kb on - strand at 387.543 kb on - strand at 387.543 kb on - strand at 387.543 kb on - strand at 387.543 kb on - strand at 387.544 kb on + strand at 387.545 kb on - strand at 387.545 kb on - strand at 387.545 kb on - strand at 387.545 kb on - strand at 387.547 kb on + strand at 387.547 kb on + strand at 387.547 kb on + strand at 387.547 kb on + strand at 387.547 kb on + strand at 387.547 kb on + strand at 387.548 kb on - strand at 387.574 kb on + strand at 387.574 kb on + strand at 387.574 kb on + strand at 387.575 kb on - strand at 387.645 kb on + strand at 387.652 kb on - strand at 387.731 kb on + strand, within Sama_0320 at 387.731 kb on + strand, within Sama_0320 at 387.744 kb on + strand, within Sama_0320 at 387.779 kb on - strand, within Sama_0320 at 387.798 kb on + strand, within Sama_0320 at 387.799 kb on - strand, within Sama_0320 at 387.811 kb on - strand, within Sama_0320 at 387.902 kb on + strand, within Sama_0320 at 387.903 kb on - strand, within Sama_0320 at 387.926 kb on + strand, within Sama_0320 at 387.926 kb on + strand, within Sama_0320 at 387.926 kb on + strand, within Sama_0320 at 387.926 kb on + strand, within Sama_0320 at 387.927 kb on - strand, within Sama_0320 at 387.927 kb on - strand, within Sama_0320 at 387.945 kb on + strand, within Sama_0320 at 387.978 kb on + strand, within Sama_0320 at 387.979 kb on - strand, within Sama_0320 at 387.979 kb on - strand, within Sama_0320 at 387.979 kb on - strand, within Sama_0320 at 388.120 kb on + strand, within Sama_0320 at 388.120 kb on + strand, within Sama_0320 at 388.120 kb on + strand, within Sama_0320 at 388.120 kb on + strand, within Sama_0320 at 388.120 kb on + strand, within Sama_0320 at 388.281 kb on + strand at 388.348 kb on + strand at 388.368 kb on + strand at 388.369 kb on - strand at 388.399 kb on + strand at 388.400 kb on - strand at 388.400 kb on - strand at 388.421 kb on + strand at 388.435 kb on + strand at 388.456 kb on + strand at 388.457 kb on - strand at 388.457 kb on - strand at 388.462 kb on - strand at 388.480 kb on + strand, within pyrE at 388.509 kb on - strand, within pyrE at 388.509 kb on - strand, within pyrE at 388.509 kb on - strand, within pyrE at 388.531 kb on + strand, within pyrE at 388.531 kb on + strand, within pyrE at 388.532 kb on - strand, within pyrE at 388.532 kb on - strand, within pyrE at 388.535 kb on - strand, within pyrE at 388.569 kb on - strand, within pyrE at 388.569 kb on - strand, within pyrE at 388.625 kb on + strand, within pyrE at 388.625 kb on + strand, within pyrE at 388.626 kb on - strand, within pyrE at 388.626 kb on - strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.627 kb on + strand, within pyrE at 388.628 kb on - strand, within pyrE at 388.628 kb on - strand, within pyrE at 388.628 kb on - strand, within pyrE at 388.695 kb on - strand, within pyrE at 388.702 kb on + strand, within pyrE at 388.708 kb on + strand, within pyrE at 388.708 kb on + strand, within pyrE at 388.709 kb on - strand, within pyrE at 388.709 kb on - strand, within pyrE at 388.738 kb on + strand, within pyrE at 388.738 kb on + strand, within pyrE at 388.765 kb on + strand, within pyrE at 388.765 kb on + strand, within pyrE at 388.766 kb on - strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.771 kb on + strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 388.772 kb on - strand, within pyrE at 389.022 kb on + strand at 389.030 kb on + strand at 389.030 kb on + strand at 389.051 kb on + strand at 389.051 kb on + strand at 389.051 kb on + strand at 389.052 kb on - strand at 389.052 kb on - strand at 389.064 kb on + strand at 389.064 kb on + strand at 389.064 kb on + strand at 389.071 kb on + strand at 389.100 kb on + strand at 389.101 kb on - strand at 389.101 kb on - strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.144 kb on + strand at 389.145 kb on - strand at 389.145 kb on - strand at 389.150 kb on + strand at 389.151 kb on - strand at 389.151 kb on - strand at 389.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 386,652 + Sama_0319 0.14 -0.9 386,652 + Sama_0319 0.14 +0.1 386,653 - Sama_0319 0.14 +0.6 386,784 + Sama_0319 0.28 +0.1 387,039 + Sama_0319 0.56 +0.6 387,039 + Sama_0319 0.56 -1.2 387,058 + Sama_0319 0.58 -0.3 387,058 + Sama_0319 0.58 -1.9 387,058 + Sama_0319 0.58 -1.8 387,058 + Sama_0319 0.58 -1.7 387,058 + Sama_0319 0.58 +0.2 387,059 - Sama_0319 0.58 +0.2 387,059 - Sama_0319 0.58 -0.5 387,060 + Sama_0319 0.58 +0.6 387,060 + Sama_0319 0.58 +1.6 387,060 + Sama_0319 0.58 +0.5 387,060 + Sama_0319 0.58 -1.6 387,061 - Sama_0319 0.58 -0.3 387,061 - Sama_0319 0.58 -0.8 387,061 - Sama_0319 0.58 -1.9 387,061 - Sama_0319 0.58 -0.7 387,075 + Sama_0319 0.60 -0.0 387,076 - Sama_0319 0.60 +1.6 387,076 - Sama_0319 0.60 -1.2 387,183 - Sama_0319 0.71 +0.8 387,200 - Sama_0319 0.73 -1.7 387,226 + Sama_0319 0.76 +0.6 387,226 + Sama_0319 0.76 -0.2 387,226 + Sama_0319 0.76 -0.1 387,226 + Sama_0319 0.76 -0.4 387,226 + Sama_0319 0.76 -0.8 387,227 - Sama_0319 0.76 -0.2 387,281 + Sama_0319 0.82 +0.7 387,281 + Sama_0319 0.82 -0.0 387,281 + Sama_0319 0.82 -0.2 387,282 - Sama_0319 0.82 +0.9 387,282 - Sama_0319 0.82 -0.5 387,282 - Sama_0319 0.82 +2.4 387,282 - Sama_0319 0.82 -0.9 387,282 - Sama_0319 0.82 -1.1 387,294 - Sama_0319 0.83 -2.1 387,345 + Sama_0319 0.89 +0.1 387,345 + Sama_0319 0.89 -0.7 387,345 + Sama_0319 0.89 +1.1 387,346 - Sama_0319 0.89 -1.6 387,346 - Sama_0319 0.89 -0.6 387,346 - Sama_0319 0.89 +0.3 387,384 + -1.0 387,408 + -1.4 387,409 - +0.1 387,424 + -0.8 387,424 + +0.3 387,424 + -1.4 387,425 - -0.0 387,425 - -0.1 387,425 - +0.8 387,425 - +0.3 387,425 - -1.0 387,425 - -1.2 387,425 - +1.6 387,425 - -0.4 387,426 + -0.1 387,426 + -0.5 387,426 + +0.7 387,427 - -0.4 387,476 + -0.3 387,489 + -0.6 387,490 - +0.4 387,536 + +0.3 387,537 - +0.8 387,537 - +1.1 387,542 + -1.1 387,542 + -0.5 387,542 + -0.0 387,542 + +0.1 387,542 + +0.1 387,542 + -1.4 387,542 + -0.0 387,542 + -0.7 387,543 - +1.8 387,543 - +1.6 387,543 - +0.1 387,543 - +0.6 387,543 - +1.8 387,543 - +0.8 387,543 - +1.6 387,544 + -1.0 387,545 - +1.1 387,545 - -0.3 387,545 - -0.5 387,545 - +1.4 387,547 + +0.6 387,547 + +1.6 387,547 + -0.6 387,547 + +0.8 387,547 + +1.2 387,547 + -0.4 387,548 - +0.1 387,574 + +0.3 387,574 + -1.2 387,574 + +1.3 387,575 - +0.1 387,645 + +1.0 387,652 - +0.6 387,731 + Sama_0320 0.19 +1.7 387,731 + Sama_0320 0.19 +0.3 387,744 + Sama_0320 0.21 -0.3 387,779 - Sama_0320 0.26 -0.8 387,798 + Sama_0320 0.29 +1.8 387,799 - Sama_0320 0.29 +0.6 387,811 - Sama_0320 0.31 -0.0 387,902 + Sama_0320 0.43 +1.4 387,903 - Sama_0320 0.44 +0.8 387,926 + Sama_0320 0.47 +1.3 387,926 + Sama_0320 0.47 +2.7 387,926 + Sama_0320 0.47 +1.1 387,926 + Sama_0320 0.47 +1.4 387,927 - Sama_0320 0.47 +2.7 387,927 - Sama_0320 0.47 +2.6 387,945 + Sama_0320 0.49 +1.3 387,978 + Sama_0320 0.54 +3.1 387,979 - Sama_0320 0.54 -0.4 387,979 - Sama_0320 0.54 +1.9 387,979 - Sama_0320 0.54 +2.3 388,120 + Sama_0320 0.74 +0.1 388,120 + Sama_0320 0.74 +0.8 388,120 + Sama_0320 0.74 +0.4 388,120 + Sama_0320 0.74 +2.1 388,120 + Sama_0320 0.74 +1.6 388,281 + +0.1 388,348 + -2.8 388,368 + +0.1 388,369 - +0.6 388,399 + +1.1 388,400 - +1.3 388,400 - +1.4 388,421 + -2.8 388,435 + -0.6 388,456 + -0.2 388,457 - -0.9 388,457 - -1.1 388,462 - -0.0 388,480 + pyrE Sama_0321 0.11 -0.6 388,509 - pyrE Sama_0321 0.15 -0.2 388,509 - pyrE Sama_0321 0.15 +0.6 388,509 - pyrE Sama_0321 0.15 -1.4 388,531 + pyrE Sama_0321 0.19 -2.6 388,531 + pyrE Sama_0321 0.19 -0.4 388,532 - pyrE Sama_0321 0.19 +0.1 388,532 - pyrE Sama_0321 0.19 -0.0 388,535 - pyrE Sama_0321 0.19 -1.2 388,569 - pyrE Sama_0321 0.24 -1.0 388,569 - pyrE Sama_0321 0.24 -0.0 388,625 + pyrE Sama_0321 0.33 -1.7 388,625 + pyrE Sama_0321 0.33 -1.5 388,626 - pyrE Sama_0321 0.33 -0.7 388,626 - pyrE Sama_0321 0.33 -2.8 388,627 + pyrE Sama_0321 0.33 -0.2 388,627 + pyrE Sama_0321 0.33 -0.9 388,627 + pyrE Sama_0321 0.33 +0.1 388,627 + pyrE Sama_0321 0.33 -0.9 388,628 - pyrE Sama_0321 0.34 +0.6 388,628 - pyrE Sama_0321 0.34 -0.7 388,628 - pyrE Sama_0321 0.34 +1.1 388,695 - pyrE Sama_0321 0.44 -1.9 388,702 + pyrE Sama_0321 0.45 -1.4 388,708 + pyrE Sama_0321 0.46 -1.8 388,708 + pyrE Sama_0321 0.46 -1.2 388,709 - pyrE Sama_0321 0.46 +1.1 388,709 - pyrE Sama_0321 0.46 -0.8 388,738 + pyrE Sama_0321 0.51 +0.8 388,738 + pyrE Sama_0321 0.51 -1.3 388,765 + pyrE Sama_0321 0.55 -0.2 388,765 + pyrE Sama_0321 0.55 -1.2 388,766 - pyrE Sama_0321 0.55 +0.6 388,771 + pyrE Sama_0321 0.56 +0.1 388,771 + pyrE Sama_0321 0.56 +1.1 388,771 + pyrE Sama_0321 0.56 -0.2 388,771 + pyrE Sama_0321 0.56 +0.1 388,772 - pyrE Sama_0321 0.56 +3.1 388,772 - pyrE Sama_0321 0.56 +0.6 388,772 - pyrE Sama_0321 0.56 -0.9 388,772 - pyrE Sama_0321 0.56 -1.8 388,772 - pyrE Sama_0321 0.56 -0.4 388,772 - pyrE Sama_0321 0.56 -1.4 389,022 + +1.1 389,030 + +1.3 389,030 + -0.1 389,051 + -1.3 389,051 + -1.7 389,051 + -0.4 389,052 - -2.1 389,052 - +2.1 389,064 + -1.4 389,064 + +0.2 389,064 + -0.4 389,071 + -0.3 389,100 + +0.8 389,101 - +0.9 389,101 - +0.3 389,144 + +0.3 389,144 + +0.3 389,144 + +1.0 389,144 + -1.0 389,144 + -1.5 389,144 + -0.8 389,145 - -0.2 389,145 - -0.9 389,150 + +1.1 389,151 - +2.7 389,151 - -1.7 389,151 - +1.1
Or see this region's nucleotide sequence