Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0311 and Sama_0312 are separated by 177 nucleotides Sama_0312 and Sama_0313 are separated by 387 nucleotides
Sama_0311: Sama_0311 - hypothetical protein (RefSeq), at 376,741 to 377,334
_0311
Sama_0312: Sama_0312 - hypothetical protein (RefSeq), at 377,512 to 378,216
_0312
Sama_0313: Sama_0313 - DNA topoisomerase I (RefSeq), at 378,604 to 379,386
_0313
Position (kb) 377
378
379 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 376.525 kb on + strand at 376.531 kb on + strand at 376.531 kb on + strand at 376.531 kb on + strand at 376.532 kb on - strand at 376.537 kb on + strand at 376.598 kb on + strand at 376.598 kb on + strand at 376.598 kb on + strand at 376.598 kb on + strand at 376.598 kb on + strand at 376.599 kb on - strand at 376.599 kb on - strand at 376.599 kb on - strand at 376.600 kb on + strand at 376.600 kb on + strand at 376.600 kb on + strand at 376.600 kb on + strand at 376.601 kb on - strand at 376.608 kb on + strand at 376.608 kb on + strand at 376.609 kb on - strand at 376.612 kb on - strand at 376.612 kb on - strand at 376.640 kb on + strand at 376.640 kb on + strand at 376.640 kb on + strand at 376.640 kb on + strand at 376.641 kb on - strand at 376.641 kb on - strand at 376.641 kb on - strand at 376.652 kb on + strand at 376.652 kb on + strand at 376.653 kb on - strand at 376.664 kb on + strand at 376.664 kb on + strand at 376.665 kb on - strand at 376.665 kb on - strand at 376.690 kb on + strand at 376.691 kb on - strand at 376.691 kb on - strand at 376.718 kb on + strand at 376.718 kb on + strand at 376.719 kb on - strand at 376.719 kb on - strand at 376.719 kb on - strand at 376.727 kb on + strand at 376.728 kb on - strand at 376.731 kb on - strand at 376.731 kb on - strand at 376.731 kb on - strand at 376.904 kb on - strand, within Sama_0311 at 376.939 kb on + strand, within Sama_0311 at 376.939 kb on + strand, within Sama_0311 at 376.989 kb on - strand, within Sama_0311 at 376.989 kb on - strand, within Sama_0311 at 376.989 kb on - strand, within Sama_0311 at 376.989 kb on - strand, within Sama_0311 at 376.989 kb on - strand, within Sama_0311 at 376.989 kb on - strand, within Sama_0311 at 376.993 kb on - strand, within Sama_0311 at 376.993 kb on - strand, within Sama_0311 at 376.993 kb on - strand, within Sama_0311 at 376.993 kb on - strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.073 kb on + strand, within Sama_0311 at 377.136 kb on + strand, within Sama_0311 at 377.163 kb on + strand, within Sama_0311 at 377.163 kb on + strand, within Sama_0311 at 377.164 kb on - strand, within Sama_0311 at 377.164 kb on - strand, within Sama_0311 at 377.212 kb on + strand, within Sama_0311 at 377.212 kb on + strand, within Sama_0311 at 377.213 kb on - strand, within Sama_0311 at 377.213 kb on - strand, within Sama_0311 at 377.213 kb on - strand, within Sama_0311 at 377.239 kb on + strand, within Sama_0311 at 377.240 kb on - strand, within Sama_0311 at 377.314 kb on + strand at 377.315 kb on - strand at 377.315 kb on - strand at 377.315 kb on - strand at 377.315 kb on - strand at 377.315 kb on - strand at 377.315 kb on - strand at 377.357 kb on + strand at 377.357 kb on + strand at 377.357 kb on + strand at 377.357 kb on + strand at 377.358 kb on - strand at 377.372 kb on + strand at 377.372 kb on + strand at 377.372 kb on + strand at 377.372 kb on + strand at 377.373 kb on - strand at 377.373 kb on - strand at 377.373 kb on - strand at 377.373 kb on - strand at 377.382 kb on + strand at 377.383 kb on - strand at 377.383 kb on - strand at 377.383 kb on - strand at 377.383 kb on - strand at 377.383 kb on - strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.419 kb on + strand at 377.420 kb on - strand at 377.420 kb on - strand at 377.425 kb on + strand at 377.425 kb on + strand at 377.426 kb on - strand at 377.426 kb on - strand at 377.426 kb on - strand at 377.426 kb on - strand at 377.433 kb on + strand at 377.433 kb on + strand at 377.441 kb on + strand at 377.442 kb on - strand at 377.500 kb on + strand at 377.500 kb on + strand at 377.500 kb on + strand at 377.500 kb on + strand at 377.514 kb on - strand at 377.514 kb on - strand at 377.514 kb on - strand at 377.514 kb on - strand at 377.514 kb on - strand at 377.560 kb on + strand at 377.560 kb on + strand at 377.575 kb on - strand at 377.582 kb on - strand at 377.591 kb on + strand, within Sama_0312 at 377.603 kb on + strand, within Sama_0312 at 377.612 kb on - strand, within Sama_0312 at 377.615 kb on - strand, within Sama_0312 at 377.630 kb on - strand, within Sama_0312 at 377.631 kb on + strand, within Sama_0312 at 377.632 kb on - strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.634 kb on - strand, within Sama_0312 at 377.634 kb on - strand, within Sama_0312 at 377.634 kb on - strand, within Sama_0312 at 377.699 kb on + strand, within Sama_0312 at 377.724 kb on - strand, within Sama_0312 at 377.767 kb on - strand, within Sama_0312 at 377.796 kb on + strand, within Sama_0312 at 377.803 kb on - strand, within Sama_0312 at 377.803 kb on - strand, within Sama_0312 at 377.806 kb on - strand, within Sama_0312 at 377.835 kb on + strand, within Sama_0312 at 377.858 kb on - strand, within Sama_0312 at 377.893 kb on - strand, within Sama_0312 at 377.915 kb on + strand, within Sama_0312 at 377.916 kb on - strand, within Sama_0312 at 378.036 kb on - strand, within Sama_0312 at 378.036 kb on - strand, within Sama_0312 at 378.036 kb on - strand, within Sama_0312 at 378.040 kb on - strand, within Sama_0312 at 378.084 kb on + strand, within Sama_0312 at 378.106 kb on + strand, within Sama_0312 at 378.173 kb on + strand at 378.174 kb on - strand at 378.190 kb on + strand at 378.224 kb on + strand at 378.235 kb on + strand at 378.236 kb on - strand at 378.236 kb on - strand at 378.237 kb on + strand at 378.237 kb on + strand at 378.241 kb on - strand at 378.241 kb on - strand at 378.253 kb on + strand at 378.311 kb on - strand at 378.311 kb on - strand at 378.324 kb on + strand at 378.324 kb on + strand at 378.349 kb on + strand at 378.349 kb on + strand at 378.350 kb on - strand at 378.363 kb on + strand at 378.364 kb on - strand at 378.369 kb on + strand at 378.369 kb on + strand at 378.370 kb on - strand at 378.370 kb on - strand at 378.382 kb on - strand at 378.401 kb on - strand at 378.432 kb on + strand at 378.432 kb on + strand at 378.433 kb on - strand at 378.433 kb on - strand at 378.485 kb on + strand at 378.485 kb on + strand at 378.486 kb on - strand at 378.486 kb on - strand at 378.500 kb on + strand at 378.500 kb on + strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.505 kb on + strand at 378.505 kb on + strand at 378.506 kb on - strand at 378.506 kb on - strand at 378.511 kb on + strand at 378.511 kb on + strand at 378.512 kb on - strand at 378.534 kb on - strand at 378.548 kb on + strand at 378.549 kb on - strand at 378.554 kb on + strand at 378.554 kb on + strand at 378.554 kb on + strand at 378.555 kb on - strand at 378.555 kb on - strand at 378.555 kb on - strand at 378.555 kb on - strand at 378.566 kb on + strand at 378.567 kb on - strand at 378.567 kb on - strand at 378.567 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.633 kb on + strand at 378.633 kb on + strand at 378.749 kb on - strand, within Sama_0313 at 378.749 kb on - strand, within Sama_0313 at 378.781 kb on - strand, within Sama_0313 at 378.803 kb on - strand, within Sama_0313 at 378.807 kb on + strand, within Sama_0313 at 378.807 kb on + strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.840 kb on - strand, within Sama_0313 at 378.840 kb on - strand, within Sama_0313 at 378.857 kb on - strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.930 kb on + strand, within Sama_0313 at 378.930 kb on + strand, within Sama_0313 at 378.988 kb on + strand, within Sama_0313 at 378.988 kb on + strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 379.017 kb on + strand, within Sama_0313 at 379.017 kb on + strand, within Sama_0313 at 379.090 kb on + strand, within Sama_0313 at 379.091 kb on - strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.101 kb on - strand, within Sama_0313 at 379.101 kb on - strand, within Sama_0313
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 376,525 + +1.6 376,531 + +1.3 376,531 + +0.5 376,531 + -1.4 376,532 - +0.2 376,537 + +0.8 376,598 + +0.3 376,598 + +0.2 376,598 + +1.2 376,598 + -2.3 376,598 + +0.3 376,599 - -0.4 376,599 - +0.6 376,599 - +0.3 376,600 + -0.3 376,600 + -1.0 376,600 + +1.2 376,600 + +0.3 376,601 - -1.2 376,608 + +1.6 376,608 + +0.8 376,609 - +1.2 376,612 - -0.3 376,612 - -1.1 376,640 + +1.2 376,640 + +0.8 376,640 + -0.8 376,640 + +0.3 376,641 - -1.2 376,641 - -0.8 376,641 - -0.5 376,652 + +0.6 376,652 + +1.2 376,653 - -0.5 376,664 + +0.7 376,664 + -0.1 376,665 - -1.6 376,665 - -1.0 376,690 + +1.3 376,691 - -0.2 376,691 - -0.9 376,718 + +1.7 376,718 + -0.1 376,719 - -0.3 376,719 - -0.1 376,719 - -0.9 376,727 + +0.2 376,728 - +0.3 376,731 - -1.1 376,731 - +2.4 376,731 - -0.0 376,904 - Sama_0311 0.27 -2.7 376,939 + Sama_0311 0.33 -0.2 376,939 + Sama_0311 0.33 -0.9 376,989 - Sama_0311 0.42 +0.8 376,989 - Sama_0311 0.42 -0.2 376,989 - Sama_0311 0.42 -0.3 376,989 - Sama_0311 0.42 +1.2 376,989 - Sama_0311 0.42 +0.7 376,989 - Sama_0311 0.42 -0.7 376,993 - Sama_0311 0.42 -0.8 376,993 - Sama_0311 0.42 +0.2 376,993 - Sama_0311 0.42 -0.9 376,993 - Sama_0311 0.42 +1.5 377,073 + Sama_0311 0.56 -0.8 377,073 + Sama_0311 0.56 +0.8 377,073 + Sama_0311 0.56 -1.4 377,073 + Sama_0311 0.56 -1.2 377,073 + Sama_0311 0.56 -0.1 377,073 + Sama_0311 0.56 +0.1 377,073 + Sama_0311 0.56 -1.2 377,073 + Sama_0311 0.56 +1.6 377,073 + Sama_0311 0.56 +0.6 377,073 + Sama_0311 0.56 -0.8 377,073 + Sama_0311 0.56 +0.7 377,073 + Sama_0311 0.56 -1.2 377,073 + Sama_0311 0.56 -0.2 377,073 + Sama_0311 0.56 +0.6 377,073 + Sama_0311 0.56 -0.9 377,073 + Sama_0311 0.56 +1.2 377,073 + Sama_0311 0.56 -0.5 377,073 + Sama_0311 0.56 -0.2 377,073 + Sama_0311 0.56 +0.6 377,073 + Sama_0311 0.56 +0.2 377,073 + Sama_0311 0.56 -1.1 377,136 + Sama_0311 0.66 +0.2 377,163 + Sama_0311 0.71 +0.2 377,163 + Sama_0311 0.71 -1.4 377,164 - Sama_0311 0.71 -0.5 377,164 - Sama_0311 0.71 -0.4 377,212 + Sama_0311 0.79 +1.2 377,212 + Sama_0311 0.79 -0.8 377,213 - Sama_0311 0.79 -0.5 377,213 - Sama_0311 0.79 +0.8 377,213 - Sama_0311 0.79 +1.1 377,239 + Sama_0311 0.84 -1.8 377,240 - Sama_0311 0.84 -0.5 377,314 + +2.2 377,315 - -0.0 377,315 - +0.3 377,315 - -0.7 377,315 - +2.0 377,315 - -0.4 377,315 - +0.2 377,357 + +0.2 377,357 + +0.6 377,357 + -1.2 377,357 + -0.4 377,358 - -1.5 377,372 + +0.7 377,372 + -0.6 377,372 + -1.4 377,372 + +1.8 377,373 - -1.7 377,373 - -1.8 377,373 - -0.6 377,373 - -0.7 377,382 + -0.4 377,383 - -1.8 377,383 - +1.2 377,383 - -1.9 377,383 - -0.2 377,383 - +0.9 377,419 + +1.3 377,419 + -1.4 377,419 + -0.0 377,419 + -2.0 377,420 - -0.5 377,420 - +0.9 377,425 + -2.7 377,425 + -1.0 377,426 - -0.5 377,426 - -1.9 377,426 - +1.4 377,426 - -0.1 377,433 + +0.5 377,433 + -0.2 377,441 + -0.5 377,442 - -1.5 377,500 + +0.2 377,500 + +0.6 377,500 + +0.5 377,500 + +0.6 377,514 - -1.0 377,514 - -0.2 377,514 - +0.8 377,514 - -0.8 377,514 - -1.2 377,560 + -0.4 377,560 + -1.3 377,575 - -0.0 377,582 - -0.8 377,591 + Sama_0312 0.11 -0.3 377,603 + Sama_0312 0.13 -0.8 377,612 - Sama_0312 0.14 -0.5 377,615 - Sama_0312 0.15 -1.5 377,630 - Sama_0312 0.17 +1.6 377,631 + Sama_0312 0.17 -1.1 377,632 - Sama_0312 0.17 -1.2 377,633 + Sama_0312 0.17 -1.2 377,633 + Sama_0312 0.17 +1.6 377,633 + Sama_0312 0.17 -0.8 377,633 + Sama_0312 0.17 +0.1 377,633 + Sama_0312 0.17 -1.1 377,633 + Sama_0312 0.17 +0.3 377,633 + Sama_0312 0.17 +0.3 377,633 + Sama_0312 0.17 +0.0 377,634 - Sama_0312 0.17 -0.9 377,634 - Sama_0312 0.17 +1.2 377,634 - Sama_0312 0.17 +1.8 377,699 + Sama_0312 0.27 +0.3 377,724 - Sama_0312 0.30 -0.5 377,767 - Sama_0312 0.36 +0.3 377,796 + Sama_0312 0.40 +0.2 377,803 - Sama_0312 0.41 -0.9 377,803 - Sama_0312 0.41 -1.1 377,806 - Sama_0312 0.42 +0.2 377,835 + Sama_0312 0.46 -1.1 377,858 - Sama_0312 0.49 -1.5 377,893 - Sama_0312 0.54 -0.7 377,915 + Sama_0312 0.57 -1.8 377,916 - Sama_0312 0.57 -0.3 378,036 - Sama_0312 0.74 +0.6 378,036 - Sama_0312 0.74 +0.7 378,036 - Sama_0312 0.74 +0.6 378,040 - Sama_0312 0.75 -0.8 378,084 + Sama_0312 0.81 +0.8 378,106 + Sama_0312 0.84 -1.1 378,173 + +1.7 378,174 - -0.3 378,190 + +0.4 378,224 + -1.3 378,235 + -1.8 378,236 - +2.2 378,236 - +0.9 378,237 + +0.6 378,237 + -0.5 378,241 - -0.2 378,241 - -0.7 378,253 + -0.5 378,311 - -0.3 378,311 - -0.5 378,324 + -1.5 378,324 + +0.6 378,349 + +0.6 378,349 + +1.3 378,350 - -0.9 378,363 + -0.2 378,364 - +1.2 378,369 + +0.7 378,369 + +0.3 378,370 - +2.8 378,370 - +0.8 378,382 - -0.9 378,401 - +0.8 378,432 + -1.7 378,432 + -0.6 378,433 - -0.7 378,433 - +0.3 378,485 + +1.3 378,485 + -1.2 378,486 - -0.9 378,486 - +0.6 378,500 + -1.1 378,500 + -1.4 378,501 - +0.6 378,501 - -0.4 378,501 - -1.0 378,501 - -0.6 378,501 - +0.3 378,505 + +0.3 378,505 + +0.8 378,506 - -0.3 378,506 - +0.5 378,511 + -1.4 378,511 + -1.3 378,512 - -0.8 378,534 - +0.1 378,548 + -0.4 378,549 - -1.7 378,554 + -0.4 378,554 + +1.6 378,554 + +0.8 378,555 - +1.3 378,555 - -1.1 378,555 - +0.8 378,555 - -0.5 378,566 + -0.6 378,567 - +0.3 378,567 - +1.0 378,567 - +1.1 378,622 - -1.5 378,622 - +0.0 378,622 - +0.6 378,622 - -1.2 378,633 + +0.3 378,633 + -0.8 378,749 - Sama_0313 0.19 -0.3 378,749 - Sama_0313 0.19 +0.3 378,781 - Sama_0313 0.23 +0.5 378,803 - Sama_0313 0.25 -2.1 378,807 + Sama_0313 0.26 -1.2 378,807 + Sama_0313 0.26 -0.2 378,808 - Sama_0313 0.26 -0.7 378,808 - Sama_0313 0.26 +0.5 378,808 - Sama_0313 0.26 +0.4 378,839 + Sama_0313 0.30 -1.2 378,839 + Sama_0313 0.30 -0.7 378,839 + Sama_0313 0.30 +0.8 378,840 - Sama_0313 0.30 +0.1 378,840 - Sama_0313 0.30 -0.8 378,857 - Sama_0313 0.32 -1.6 378,902 + Sama_0313 0.38 -0.1 378,902 + Sama_0313 0.38 +0.1 378,902 + Sama_0313 0.38 +0.0 378,902 + Sama_0313 0.38 -0.0 378,902 + Sama_0313 0.38 -0.2 378,902 + Sama_0313 0.38 -1.7 378,903 - Sama_0313 0.38 +1.3 378,903 - Sama_0313 0.38 +1.9 378,903 - Sama_0313 0.38 -0.4 378,930 + Sama_0313 0.42 -2.6 378,930 + Sama_0313 0.42 -1.7 378,988 + Sama_0313 0.49 +0.1 378,988 + Sama_0313 0.49 -0.6 378,989 - Sama_0313 0.49 -1.1 378,989 - Sama_0313 0.49 +0.7 378,989 - Sama_0313 0.49 +1.8 379,017 + Sama_0313 0.53 -1.2 379,017 + Sama_0313 0.53 -0.3 379,090 + Sama_0313 0.62 +0.3 379,091 - Sama_0313 0.62 +0.1 379,100 + Sama_0313 0.63 +1.0 379,100 + Sama_0313 0.63 +2.0 379,100 + Sama_0313 0.63 -1.1 379,101 - Sama_0313 0.63 -0.6 379,101 - Sama_0313 0.63 +2.3
Or see this region's nucleotide sequence