Strain Fitness in Shewanella amazonensis SB2B around Sama_0149

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
170,515	+		Sama_0148	0.41	-1.1
170,516	-		Sama_0148	0.41	-0.1
170,640	+		Sama_0148	0.57	-0.9
170,640	+		Sama_0148	0.57	-2.8
170,641	-		Sama_0148	0.57	-0.9
170,646	+		Sama_0148	0.57	-2.0
170,658	+		Sama_0148	0.59	-1.7
170,658	+		Sama_0148	0.59	-1.4
170,658	+		Sama_0148	0.59	-1.1
170,659	-		Sama_0148	0.59	+1.1
170,659	-		Sama_0148	0.59	+0.6
170,664	+		Sama_0148	0.60	+0.9
170,664	+		Sama_0148	0.60	-2.0
170,785	+		Sama_0148	0.75	-2.4
170,785	+		Sama_0148	0.75	-0.2
170,785	+		Sama_0148	0.75	-0.6
170,785	+		Sama_0148	0.75	+1.9
170,786	-		Sama_0148	0.75	-0.1
170,786	-		Sama_0148	0.75	+1.5
170,786	-		Sama_0148	0.75	+0.9
170,786	-		Sama_0148	0.75	-1.9
170,786	-		Sama_0148	0.75	-0.2
170,786	-		Sama_0148	0.75	-1.0
170,787	+		Sama_0148	0.75	+1.7
170,787	+		Sama_0148	0.75	-0.1
170,787	+		Sama_0148	0.75	+2.2
170,787	+		Sama_0148	0.75	-1.3
170,787	+		Sama_0148	0.75	+0.7
170,787	+		Sama_0148	0.75	+0.4
170,787	+		Sama_0148	0.75	+0.6
170,787	+		Sama_0148	0.75	+1.4
170,787	+		Sama_0148	0.75	+0.8
170,787	+		Sama_0148	0.75	-0.5
170,787	+		Sama_0148	0.75	-0.3
170,787	+		Sama_0148	0.75	+0.9
170,787	+		Sama_0148	0.75	-0.9
170,787	+		Sama_0148	0.75	-1.0
170,787	+		Sama_0148	0.75	-1.7
170,787	+		Sama_0148	0.75	-0.4
170,787	+		Sama_0148	0.75	-0.5
170,787	+		Sama_0148	0.75	-1.3
170,787	+		Sama_0148	0.75	-0.8
170,788	-		Sama_0148	0.75	+0.0
170,788	-		Sama_0148	0.75	-0.2
170,788	-		Sama_0148	0.75	-0.7
170,788	-		Sama_0148	0.75	-1.9
170,788	-		Sama_0148	0.75	-0.1
170,788	-		Sama_0148	0.75	+0.4
170,788	-		Sama_0148	0.75	-1.6
170,788	-		Sama_0148	0.75	-0.7
170,788	-		Sama_0148	0.75	-0.2
170,788	-		Sama_0148	0.75	+1.2
170,788	-		Sama_0148	0.75	-1.1
170,788	-		Sama_0148	0.75	-0.1
170,788	-		Sama_0148	0.75	-0.4
170,796	+		Sama_0148	0.76	-0.9
170,820	+		Sama_0148	0.79	-0.3
170,820	+		Sama_0148	0.79	+0.1
170,820	+		Sama_0148	0.79	-1.3
170,821	-		Sama_0148	0.79	-0.7
170,821	-		Sama_0148	0.79	-2.0
170,821	-		Sama_0148	0.79	+2.9
170,821	-		Sama_0148	0.79	-0.3
170,821	-		Sama_0148	0.79	+0.8
170,847	+		Sama_0148	0.83	+0.9
170,898	+		Sama_0148	0.89	-0.5
170,898	+		Sama_0148	0.89	+1.2
170,899	-		Sama_0148	0.89	-1.1
170,899	-		Sama_0148	0.89	-2.8
170,899	-		Sama_0148	0.89	+0.1
170,928	-				+1.3
170,999	-				-1.3
171,008	+				-2.8
171,008	+				+2.2
171,008	+				-2.2
171,008	+				-2.0
171,009	-				-0.1
171,009	-				-2.1
171,009	-				-0.7
171,018	+				-0.1
171,018	+				-1.3
171,018	+				-0.1
171,018	+				-2.0
171,018	+				-1.4
171,018	+				-1.2
171,018	+				-1.2
171,018	+				-1.5
171,018	+				-0.7
171,018	+				+1.4
171,018	+				-0.3
171,019	-				-1.7
171,019	-				-0.1
171,019	-				-0.5
171,019	-				+0.2
171,019	-				+1.7
171,019	-				-2.3
171,019	-				+0.1
171,019	-				+0.5
171,019	-				-1.9
171,019	-				-2.0
171,019	-				+3.0
171,019	-				-0.9
171,019	-				-0.2
171,019	-				+0.8
171,043	+				-0.3
171,044	-				-1.5
171,063	+				+0.6
171,063	+				+1.7
171,094	-				-0.3
171,166	-				-1.1
171,184	+				-0.5
171,184	+				-0.2
171,184	+				+1.6
171,185	-				+0.8
171,185	-				-1.4
171,185	-				-0.5
171,185	-				-1.7
171,257	+				-1.3
171,258	-				-1.0
171,258	-				+1.4
171,258	-				-0.1
171,317	+				-0.8
171,317	+				-1.0
171,317	+				-1.0
171,317	+				+0.1
171,386	+				-0.9
171,386	+				-1.2
171,386	+				+0.3
171,386	+				-1.8
171,386	+				-0.4
171,386	+				+0.5
171,386	+				-0.7
171,386	+				-0.2
171,386	+				-1.3
171,387	-				-0.8
171,387	-				-2.2
171,387	-				+1.9
171,387	-				+0.3
171,424	-				-1.7
171,453	+				+0.1
171,453	+				+0.3
171,454	-				-1.0
171,454	-				-0.8
171,466	+				+0.7
171,466	+				-0.2
171,466	+				-1.7
171,467	-				+0.5
171,467	-				-1.9
171,526	+				-1.5
171,526	+				-0.5
171,527	-				-1.3
171,527	-				+0.8
171,527	-				+0.3
171,527	-				-1.8
171,527	-				+0.4
171,527	-				+0.7
171,527	-				-0.3
171,527	-				-0.3
171,573	+		Sama_0149	0.15	+0.8
171,573	+		Sama_0149	0.15	+0.4
171,603	-		Sama_0149	0.18	+0.1
171,683	-		Sama_0149	0.27	+0.2
171,697	+		Sama_0149	0.29	-0.5
171,697	+		Sama_0149	0.29	-1.3
171,697	+		Sama_0149	0.29	-0.7
171,697	+		Sama_0149	0.29	-0.3
171,697	+		Sama_0149	0.29	-0.8
171,697	+		Sama_0149	0.29	-1.4
171,697	+		Sama_0149	0.29	-1.2
171,697	+		Sama_0149	0.29	+0.0
171,697	+		Sama_0149	0.29	-0.5
171,697	+		Sama_0149	0.29	-1.9
171,697	+		Sama_0149	0.29	+0.4
171,697	+		Sama_0149	0.29	-1.4
171,697	+		Sama_0149	0.29	+0.3
171,697	+		Sama_0149	0.29	-2.0
171,697	+		Sama_0149	0.29	-0.4
171,697	+		Sama_0149	0.29	-1.1
171,697	+		Sama_0149	0.29	-0.2
171,697	+		Sama_0149	0.29	+1.4
171,697	+		Sama_0149	0.29	-1.0
171,697	+		Sama_0149	0.29	-0.4
171,697	+		Sama_0149	0.29	-2.9
171,698	-		Sama_0149	0.29	-0.8
171,698	-		Sama_0149	0.29	-0.1
171,698	-		Sama_0149	0.29	+0.4
171,698	-		Sama_0149	0.29	-1.3
171,698	-		Sama_0149	0.29	+0.3
171,698	-		Sama_0149	0.29	-0.3
171,698	-		Sama_0149	0.29	-1.4
171,698	-		Sama_0149	0.29	-0.7
171,698	-		Sama_0149	0.29	-1.8
171,698	-		Sama_0149	0.29	-0.5
171,698	-		Sama_0149	0.29	-1.8
171,698	-		Sama_0149	0.29	-1.2
171,698	-		Sama_0149	0.29	-1.7
171,698	-		Sama_0149	0.29	+0.5
171,698	-		Sama_0149	0.29	+1.2
171,698	-		Sama_0149	0.29	-0.8
171,698	-		Sama_0149	0.29	-2.6
171,698	-		Sama_0149	0.29	+0.7
171,698	-		Sama_0149	0.29	-0.6
171,722	+		Sama_0149	0.32	-2.9
171,814	+		Sama_0149	0.42	-1.3
171,814	+		Sama_0149	0.42	-2.5
171,815	-		Sama_0149	0.42	-1.0
171,815	-		Sama_0149	0.42	-1.3
171,815	-		Sama_0149	0.42	-0.9
171,815	-		Sama_0149	0.42	-0.6
171,815	-		Sama_0149	0.42	+0.4
171,815	-		Sama_0149	0.42	-2.2
171,815	-		Sama_0149	0.42	-1.3
171,832	-		Sama_0149	0.44	-1.2
171,833	+		Sama_0149	0.44	-0.2
171,834	-		Sama_0149	0.44	+1.7
171,834	-		Sama_0149	0.44	+1.7
171,834	-		Sama_0149	0.44	-0.2
171,834	-		Sama_0149	0.44	-0.9
171,859	+		Sama_0149	0.47	+0.4
171,859	+		Sama_0149	0.47	-0.2
171,859	+		Sama_0149	0.47	-0.7
171,860	-		Sama_0149	0.47	+1.2
171,860	-		Sama_0149	0.47	+0.2
171,860	-		Sama_0149	0.47	-0.3
171,860	-		Sama_0149	0.47	-2.3
171,898	+		Sama_0149	0.52	+4.2
171,898	+		Sama_0149	0.52	-0.2
171,898	+		Sama_0149	0.52	-1.1
171,898	+		Sama_0149	0.52	-1.2
171,898	+		Sama_0149	0.52	+1.9
171,899	-		Sama_0149	0.52	-1.0
171,899	-		Sama_0149	0.52	-1.0
171,899	-		Sama_0149	0.52	-0.8
171,899	-		Sama_0149	0.52	+0.1
171,899	-		Sama_0149	0.52	-1.2
171,899	-		Sama_0149	0.52	-1.9
171,899	-		Sama_0149	0.52	-0.8
171,947	+		Sama_0149	0.57	-0.5
171,947	+		Sama_0149	0.57	+0.2
171,947	+		Sama_0149	0.57	+0.0
171,947	+		Sama_0149	0.57	+1.7
171,947	+		Sama_0149	0.57	+0.1
171,947	+		Sama_0149	0.57	-0.6
171,947	+		Sama_0149	0.57	+0.9
171,947	+		Sama_0149	0.57	-2.2
171,947	+		Sama_0149	0.57	-0.3
171,947	+		Sama_0149	0.57	-0.5
171,947	+		Sama_0149	0.57	-0.7
171,947	+		Sama_0149	0.57	-0.8
171,947	+		Sama_0149	0.57	-0.2
171,948	-		Sama_0149	0.57	+0.9
171,948	-		Sama_0149	0.57	-0.7
171,948	-		Sama_0149	0.57	+0.8
171,948	-		Sama_0149	0.57	-0.3
171,948	-		Sama_0149	0.57	-2.2
171,948	-		Sama_0149	0.57	-1.3
171,951	+		Sama_0149	0.58	-0.9
171,951	+		Sama_0149	0.58	-0.1
171,951	+		Sama_0149	0.58	+1.7
171,951	+		Sama_0149	0.58	-2.3
171,951	+		Sama_0149	0.58	+1.1
171,951	+		Sama_0149	0.58	-0.4
171,951	+		Sama_0149	0.58	-1.0
171,951	+		Sama_0149	0.58	-0.2
171,951	+		Sama_0149	0.58	-0.0
171,952	-		Sama_0149	0.58	+0.9
171,952	-		Sama_0149	0.58	-0.2
171,952	-		Sama_0149	0.58	-1.6
171,952	-		Sama_0149	0.58	-1.0
171,952	-		Sama_0149	0.58	-1.0
171,952	-		Sama_0149	0.58	+1.1
171,952	-		Sama_0149	0.58	+0.9
171,952	-		Sama_0149	0.58	-1.5
171,952	-		Sama_0149	0.58	+0.7
171,952	-		Sama_0149	0.58	-1.3
171,952	-		Sama_0149	0.58	+1.9
171,952	-		Sama_0149	0.58	+0.7
171,952	-		Sama_0149	0.58	-0.3
171,952	-		Sama_0149	0.58	+1.2
171,952	-		Sama_0149	0.58	-0.2
171,956	+		Sama_0149	0.58	+0.2
171,956	+		Sama_0149	0.58	-1.0
171,956	+		Sama_0149	0.58	-1.0
171,956	+		Sama_0149	0.58	-0.7
171,956	-		Sama_0149	0.58	-0.2
171,956	+		Sama_0149	0.58	-1.2
171,956	+		Sama_0149	0.58	-1.3
171,956	+		Sama_0149	0.58	-0.5
171,957	-		Sama_0149	0.58	+0.1
171,957	-		Sama_0149	0.58	-0.3
171,957	-		Sama_0149	0.58	+2.0
171,957	-		Sama_0149	0.58	+0.4
171,957	-		Sama_0149	0.58	-1.6
171,957	-		Sama_0149	0.58	+0.2
171,957	-		Sama_0149	0.58	-0.3
171,957	-		Sama_0149	0.58	-0.3
171,957	-		Sama_0149	0.58	-0.7
171,957	-		Sama_0149	0.58	+0.4
171,957	-		Sama_0149	0.58	-1.2
171,962	+		Sama_0149	0.59	-0.1
171,962	+		Sama_0149	0.59	+0.7
171,981	+		Sama_0149	0.61	+1.0
171,982	-		Sama_0149	0.61	-1.1
171,982	-		Sama_0149	0.61	+0.9
171,982	-		Sama_0149	0.61	-1.2
171,982	-		Sama_0149	0.61	-2.3
171,982	-		Sama_0149	0.61	-0.2
171,998	+		Sama_0149	0.63	-0.8
171,998	+		Sama_0149	0.63	-0.7
171,998	+		Sama_0149	0.63	-0.8
171,999	-		Sama_0149	0.63	-0.8
172,050	+		Sama_0149	0.69	-0.7
172,050	+		Sama_0149	0.69	-1.2
172,051	-		Sama_0149	0.69	-0.7
172,051	-		Sama_0149	0.69	-0.3
172,051	-		Sama_0149	0.69	+0.8
172,051	-		Sama_0149	0.69	-0.5
172,067	+		Sama_0149	0.71	+0.7
172,067	+		Sama_0149	0.71	-0.8
172,067	+		Sama_0149	0.71	+0.4
172,067	+		Sama_0149	0.71	-0.5
172,067	+		Sama_0149	0.71	+1.7
172,067	+		Sama_0149	0.71	+0.1
172,067	+		Sama_0149	0.71	-0.8
172,068	-		Sama_0149	0.71	-1.0
172,068	-		Sama_0149	0.71	-1.8
172,068	-		Sama_0149	0.71	+0.7
172,071	+		Sama_0149	0.71	+0.2
172,071	+		Sama_0149	0.71	-0.2
172,071	+		Sama_0149	0.71	-0.1
172,071	+		Sama_0149	0.71	-1.5
172,071	+		Sama_0149	0.71	+1.7
172,071	+		Sama_0149	0.71	-0.2
172,072	-		Sama_0149	0.71	-1.8
172,072	-		Sama_0149	0.71	+0.2
172,086	+		Sama_0149	0.73	+0.7
172,086	+		Sama_0149	0.73	+0.1
172,086	+		Sama_0149	0.73	-0.8
172,086	+		Sama_0149	0.73	-0.5
172,087	-		Sama_0149	0.73	-1.1
172,087	-		Sama_0149	0.73	+0.1
172,087	-		Sama_0149	0.73	+2.2
172,087	-		Sama_0149	0.73	-0.6
172,106	+		Sama_0149	0.75	-1.4
172,106	+		Sama_0149	0.75	-1.5
172,106	+		Sama_0149	0.75	+0.3
172,107	-		Sama_0149	0.75	+0.2
172,107	-		Sama_0149	0.75	-0.5
172,107	-		Sama_0149	0.75	-0.8
172,119	+		Sama_0149	0.77	-1.0
172,119	+		Sama_0149	0.77	-0.9
172,119	+		Sama_0149	0.77	-1.3
172,119	+		Sama_0149	0.77	-0.3
172,119	+		Sama_0149	0.77	-0.1
172,119	+		Sama_0149	0.77	+0.1
172,119	+		Sama_0149	0.77	-1.6
172,119	+		Sama_0149	0.77	+1.1
172,120	-		Sama_0149	0.77	+0.7
172,120	-		Sama_0149	0.77	-0.9
172,120	-		Sama_0149	0.77	-0.6
172,249	+				-0.4
172,320	+				+0.7
172,320	+				-1.5
172,321	-				-1.8
172,321	-				+0.1
172,336	+				-1.2
172,336	+				-1.3
172,362	+				-1.0
172,362	+				+0.7
172,362	+				-0.7
172,363	-				-0.3
172,363	-				-0.1
172,363	-				-0.7
172,369	+				-1.8
172,370	-				-0.9
172,370	-				-1.0
172,370	-				-1.2
172,389	+				+0.2
172,389	+				-1.1
172,389	+				-1.5
172,389	+				+2.2
172,389	+				+0.3
172,398	+				-0.3
172,416	+				+1.0
172,417	-				+0.7
172,418	+				-0.2
172,418	+				-1.2
172,418	+				-2.1
172,419	-				-1.1
172,419	-				-0.1
172,419	-				-2.2
172,419	-				-1.2
172,419	-				+0.6
172,419	-				+0.8
172,419	-				-0.1
172,464	+				-1.7
172,464	+				-0.7
172,464	+				-0.3
172,464	+				+0.4
172,464	+				-1.8
172,464	+				-0.6
172,465	-				+1.2
172,465	-				-2.0
172,471	+				-0.9
172,494	+				-0.7
172,530	+				-1.3
172,531	-				-0.1
172,576	+				-0.2
172,576	+				-1.7
172,576	+				+0.9
172,576	+				-0.0
172,576	+				-1.0
172,577	-				-1.0
172,577	-				+0.6
172,577	-				+0.5
172,577	-				+1.2
172,593	-				-0.0
172,593	-				+1.0
172,593	-				-1.4
172,593	-				+0.5
172,593	-				-2.8
172,600	-				+2.2
172,612	+				-1.0
172,612	+				+1.2
172,612	+				+2.0
172,612	+				-1.3
172,612	+				-3.1
172,613	-				-0.3
172,613	-				-0.3
172,613	-				+1.7
172,613	-				+1.5
172,613	-				-1.1
172,613	-				-0.7
172,613	-				-1.2
172,613	-				+0.2
172,616	+				-1.5
172,617	-				-0.8
172,617	-				+2.2
172,617	-				-0.1
172,617	-				-2.2
172,617	-				-1.3
172,637	+				+0.9
172,637	+				-2.1
172,638	-				-1.4
172,638	-				-0.4
172,664	+				-3.1
172,693	-				+1.1
172,693	-				-0.6
172,693	-				+0.8
172,697	+				-1.4
172,698	-				-0.9
172,710	-		Sama_0150	0.11	-2.2
172,719	-		Sama_0150	0.12	-0.8
172,805	+		Sama_0150	0.23	+0.2
172,806	-		Sama_0150	0.23	-1.5
172,895	+		Sama_0150	0.35	+1.2
172,925	-		Sama_0150	0.39	-2.9
172,925	-		Sama_0150	0.39	+0.2
172,925	-		Sama_0150	0.39	-0.5
172,925	-		Sama_0150	0.39	+0.7
172,925	-		Sama_0150	0.39	-0.6
172,995	+		Sama_0150	0.47	+1.1
172,995	+		Sama_0150	0.47	+0.1
172,996	-		Sama_0150	0.47	-0.5
172,996	-		Sama_0150	0.47	-1.4
172,996	-		Sama_0150	0.47	-2.0
172,996	-		Sama_0150	0.47	-2.5
172,996	-		Sama_0150	0.47	-0.5
173,004	+		Sama_0150	0.48	-1.0
173,005	-		Sama_0150	0.49	+2.7
173,005	-		Sama_0150	0.49	-1.0
173,032	+		Sama_0150	0.52	-1.0
173,032	+		Sama_0150	0.52	+0.2
173,033	-		Sama_0150	0.52	-0.0
173,033	-		Sama_0150	0.52	-2.1
173,033	-		Sama_0150	0.52	-1.8
173,048	+		Sama_0150	0.54	+0.7
173,048	+		Sama_0150	0.54	-2.2
173,048	+		Sama_0150	0.54	-1.0
173,049	-		Sama_0150	0.54	-1.8
173,049	-		Sama_0150	0.54	-0.5
173,049	-		Sama_0150	0.54	-1.4
173,080	-		Sama_0150	0.58	-0.9
173,127	+		Sama_0150	0.64	-2.3
173,127	+		Sama_0150	0.64	+1.3
173,127	+		Sama_0150	0.64	-0.6
173,128	-		Sama_0150	0.64	-1.1
173,128	-		Sama_0150	0.64	-0.9
173,128	-		Sama_0150	0.64	-0.0
173,128	-		Sama_0150	0.64	-0.5
173,133	+		Sama_0150	0.65	-0.8
173,133	+		Sama_0150	0.65	+0.2
173,133	+		Sama_0150	0.65	-1.4
173,133	+		Sama_0150	0.65	-0.2
173,133	+		Sama_0150	0.65	+0.9
173,133	+		Sama_0150	0.65	-1.3
173,134	-		Sama_0150	0.65	-0.8
173,134	-		Sama_0150	0.65	+0.7
173,134	-		Sama_0150	0.65	-2.2
173,134	-		Sama_0150	0.65	+1.9
173,134	-		Sama_0150	0.65	+0.9
173,134	-		Sama_0150	0.65	-0.2
173,139	+		Sama_0150	0.66	+1.7
173,139	+		Sama_0150	0.66	-1.7
173,139	+		Sama_0150	0.66	+0.6
173,139	+		Sama_0150	0.66	+0.4
173,139	+		Sama_0150	0.66	-1.2
173,139	+		Sama_0150	0.66	-0.7
173,140	-		Sama_0150	0.66	-0.2
173,140	-		Sama_0150	0.66	-2.1
173,140	-		Sama_0150	0.66	-0.2
173,140	-		Sama_0150	0.66	+2.7
173,140	-		Sama_0150	0.66	-0.1
173,140	-		Sama_0150	0.66	-0.1
173,140	-		Sama_0150	0.66	-1.6
173,140	-		Sama_0150	0.66	+1.4
173,175	+		Sama_0150	0.70	-0.6
173,176	-		Sama_0150	0.70	+0.2
173,272	+		Sama_0150	0.82	-1.1
173,272	+		Sama_0150	0.82	+0.2
173,272	+		Sama_0150	0.82	+0.3
173,273	-		Sama_0150	0.82	+0.4
173,273	-		Sama_0150	0.82	-1.2
173,273	-		Sama_0150	0.82	+0.3
173,273	-		Sama_0150	0.82	+0.1
173,273	-		Sama_0150	0.82	+2.2
173,289	+		Sama_0150	0.84	-1.2
173,289	+		Sama_0150	0.84	-1.3
173,289	+		Sama_0150	0.84	+0.2
173,290	-		Sama_0150	0.85	-0.5
173,290	-		Sama_0150	0.85	+0.7
173,304	+		Sama_0150	0.86	-1.0
173,304	+		Sama_0150	0.86	+1.2
173,305	-		Sama_0150	0.86	-0.1
173,306	+		Sama_0150	0.87	-0.2
173,306	+		Sama_0150	0.87	-0.1
173,306	+		Sama_0150	0.87	+0.0
173,306	+		Sama_0150	0.87	-0.3
173,307	-		Sama_0150	0.87	-1.0
173,307	-		Sama_0150	0.87	+0.6