Strain Fitness in Shewanella amazonensis SB2B around Sama_0134

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
150,170	+		Sama_0132	0.87	+1.2
150,170	+		Sama_0132	0.87	+0.7
150,170	+		Sama_0132	0.87	+1.2
150,170	+		Sama_0132	0.87	+0.5
150,170	+		Sama_0132	0.87	+0.4
150,171	-		Sama_0132	0.87	+0.2
150,171	-		Sama_0132	0.87	-0.0
150,171	-		Sama_0132	0.87	+0.7
150,171	-		Sama_0132	0.87	-0.9
150,177	+		Sama_0132	0.87	-0.1
150,257	+				+2.2
150,257	+				+0.3
150,257	+				-0.5
150,258	-				-1.7
150,258	-				+1.2
150,258	-				-0.8
150,271	+				-0.7
150,277	-				-1.1
150,326	+				+0.5
150,327	-				+0.4
150,327	-				-2.7
150,327	-				+2.2
150,369	+				+1.2
150,369	+				+0.7
150,369	+				+1.7
150,369	+				-0.5
150,369	+				-0.0
150,369	+				-0.0
150,369	+				+0.9
150,370	-				-0.5
150,370	-				-2.1
150,372	+				+0.4
150,372	+				+2.1
150,372	+				+1.2
150,372	+				+0.7
150,372	+				+1.3
150,372	+				+1.5
150,373	-				-2.2
150,373	-				-0.7
150,411	+				+0.8
150,411	+				-1.0
150,411	+				+1.7
150,412	-				-1.2
150,412	-				+1.2
150,412	-				+0.7
150,412	-				-0.1
150,561	+		Sama_0133	0.30	+1.5
150,561	+		Sama_0133	0.30	+1.7
150,561	+		Sama_0133	0.30	+0.4
150,561	+		Sama_0133	0.30	-1.2
150,562	-		Sama_0133	0.30	+0.7
150,562	-		Sama_0133	0.30	+1.5
150,562	-		Sama_0133	0.30	+0.7
150,589	+		Sama_0133	0.34	+1.8
150,589	+		Sama_0133	0.34	-0.3
150,589	+		Sama_0133	0.34	+1.9
150,590	-		Sama_0133	0.34	+1.7
150,602	+		Sama_0133	0.36	-2.1
150,602	+		Sama_0133	0.36	+1.5
150,603	-		Sama_0133	0.36	-2.0
150,686	+		Sama_0133	0.48	+1.3
150,694	+		Sama_0133	0.49	+0.5
150,694	+		Sama_0133	0.49	+0.0
150,694	+		Sama_0133	0.49	+0.8
150,695	-		Sama_0133	0.50	-1.1
150,695	-		Sama_0133	0.50	+2.2
150,696	+		Sama_0133	0.50	+1.9
150,696	+		Sama_0133	0.50	+1.2
150,697	-		Sama_0133	0.50	-0.7
150,697	-		Sama_0133	0.50	-0.0
150,697	-		Sama_0133	0.50	+1.7
150,697	-		Sama_0133	0.50	+0.4
150,697	-		Sama_0133	0.50	+0.1
150,697	-		Sama_0133	0.50	+0.2
150,798	+		Sama_0133	0.65	+0.7
150,868	+		Sama_0133	0.75	-0.1
150,868	+		Sama_0133	0.75	-0.3
150,868	+		Sama_0133	0.75	-0.1
150,868	+		Sama_0133	0.75	-0.7
150,869	-		Sama_0133	0.75	+0.7
150,869	-		Sama_0133	0.75	-0.7
150,898	+		Sama_0133	0.80	+0.7
150,898	+		Sama_0133	0.80	+1.7
150,898	+		Sama_0133	0.80	+1.0
150,899	-		Sama_0133	0.80	+0.2
150,899	-		Sama_0133	0.80	-0.1
150,906	+		Sama_0133	0.81	+1.0
151,010	-				-1.8
151,022	+				-0.8
151,022	+				+0.5
151,022	+				-0.9
151,023	-				+0.3
151,023	-				+0.9
151,042	+				-0.6
151,042	+				-0.1
151,043	-				-0.9
151,155	+		Sama_0134	0.24	+0.7
151,247	+		Sama_0134	0.40	-0.5
151,422	-		Sama_0134	0.72	-0.8
151,456	+		Sama_0134	0.78	-0.9
151,457	-		Sama_0134	0.78	-0.2
151,473	+		Sama_0134	0.81	+0.2
151,556	+				+0.3
151,556	+				-0.8
151,556	+				+0.2
151,556	+				+2.2
151,557	-				+0.7
151,557	-				+1.2
151,557	-				-1.3
151,598	+				+0.1
151,598	+				-0.5
151,598	+				+0.4
151,599	-				+0.5
151,599	-				+0.2
151,653	+				-0.6
151,653	+				-0.8
151,653	+				-0.3
151,653	+				-1.3
151,654	-				+0.3
151,654	-				-1.1
151,654	-				-0.7
151,654	-				-1.8
151,674	+		Sama_0135	0.13	-1.3
151,674	+		Sama_0135	0.13	-0.8
151,674	+		Sama_0135	0.13	-0.1
151,674	+		Sama_0135	0.13	-0.0
151,674	+		Sama_0135	0.13	-1.8
151,674	+		Sama_0135	0.13	-1.0
151,675	-		Sama_0135	0.13	-0.9
151,675	-		Sama_0135	0.13	-0.7
151,675	-		Sama_0135	0.13	-0.9
151,675	-		Sama_0135	0.13	-1.0
151,732	-		Sama_0135	0.20	-0.8
151,748	+		Sama_0135	0.23	+0.4
151,748	+		Sama_0135	0.23	-0.5
151,748	+		Sama_0135	0.23	+0.9
151,749	-		Sama_0135	0.23	-0.3
151,749	-		Sama_0135	0.23	-0.2
151,782	+		Sama_0135	0.27	-2.0
151,783	-		Sama_0135	0.27	-1.6
151,794	+		Sama_0135	0.29	-1.1
151,795	-		Sama_0135	0.29	-1.2
151,810	-		Sama_0135	0.31	+0.5
151,878	+		Sama_0135	0.40	-0.0
151,878	+		Sama_0135	0.40	-1.0
151,878	+		Sama_0135	0.40	+0.7
151,878	+		Sama_0135	0.40	-1.2
151,878	+		Sama_0135	0.40	+1.1
151,878	+		Sama_0135	0.40	+0.9
151,879	-		Sama_0135	0.40	-0.1
151,879	-		Sama_0135	0.40	-0.8
151,879	-		Sama_0135	0.40	-0.3
151,879	-		Sama_0135	0.40	-1.9
151,965	-		Sama_0135	0.52	-2.1
151,965	-		Sama_0135	0.52	-1.7
151,965	-		Sama_0135	0.52	+0.2
152,028	+		Sama_0135	0.60	-0.4
152,028	+		Sama_0135	0.60	+0.4
152,028	+		Sama_0135	0.60	+0.8
152,028	+		Sama_0135	0.60	+2.2
152,029	-		Sama_0135	0.60	+0.2
152,029	-		Sama_0135	0.60	-1.1
152,090	+		Sama_0135	0.69	+0.2
152,090	+		Sama_0135	0.69	-0.5
152,090	+		Sama_0135	0.69	-0.7
152,090	+		Sama_0135	0.69	-0.9
152,090	+		Sama_0135	0.69	+2.4
152,090	+		Sama_0135	0.69	+1.4
152,091	-		Sama_0135	0.69	-1.1
152,091	-		Sama_0135	0.69	-1.6
152,091	-		Sama_0135	0.69	+1.1
152,091	-		Sama_0135	0.69	+0.1
152,091	-		Sama_0135	0.69	+0.2
152,091	-		Sama_0135	0.69	-2.4
152,091	-		Sama_0135	0.69	+1.9
152,091	-		Sama_0135	0.69	-0.5
152,227	+		Sama_0135	0.87	-0.2
152,227	+		Sama_0135	0.87	-0.3
152,227	+		Sama_0135	0.87	-1.1
152,228	-		Sama_0135	0.87	+1.4
152,318	+				+1.7
152,354	-				-0.8
152,460	+				-1.9
152,462	+				+0.2
152,462	+				-0.3
152,462	+				+0.7
152,462	+				+0.6
152,463	-				+0.1
152,463	-				+0.9
152,463	-				+0.6
152,518	+				-1.2
152,518	+				-0.7
152,518	+				-1.5
152,519	-				-1.1