Strain Fitness in Shewanella amazonensis SB2B around Sama_0129

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
143,328	+				-2.0
143,328	+				+0.4
143,328	+				+0.7
143,329	-				-0.1
143,330	+				+1.7
143,331	-				+0.7
143,378	+				+0.7
143,411	+				-0.7
143,411	+				+1.0
143,411	+				-0.8
143,411	+				-0.6
143,411	+				-1.6
143,412	-				-0.8
143,412	-				-0.7
143,412	-				+0.8
143,412	-				-2.4
143,412	-				+1.2
143,412	-				-1.2
143,418	+		Sama_0128	0.10	+0.5
143,444	+		Sama_0128	0.14	-0.7
143,455	+		Sama_0128	0.16	+2.2
143,455	+		Sama_0128	0.16	+0.9
143,455	+		Sama_0128	0.16	-0.6
143,456	-		Sama_0128	0.16	+1.7
143,456	-		Sama_0128	0.16	-1.5
143,456	-		Sama_0128	0.16	-1.6
143,463	+		Sama_0128	0.17	-1.0
143,520	+		Sama_0128	0.26	-1.9
143,520	+		Sama_0128	0.26	-1.3
143,520	+		Sama_0128	0.26	+0.7
143,520	+		Sama_0128	0.26	+1.7
143,520	+		Sama_0128	0.26	-0.4
143,520	+		Sama_0128	0.26	-0.5
143,520	+		Sama_0128	0.26	-0.3
143,520	+		Sama_0128	0.26	+1.7
143,520	+		Sama_0128	0.26	-2.5
143,520	+		Sama_0128	0.26	-0.6
143,520	+		Sama_0128	0.26	-0.3
143,521	-		Sama_0128	0.26	-0.5
143,521	-		Sama_0128	0.26	+1.3
143,521	-		Sama_0128	0.26	-0.2
143,521	-		Sama_0128	0.26	+0.9
143,521	-		Sama_0128	0.26	-0.2
143,521	-		Sama_0128	0.26	-0.1
143,521	-		Sama_0128	0.26	-0.3
143,521	-		Sama_0128	0.26	+0.8
143,521	-		Sama_0128	0.26	-0.8
143,521	-		Sama_0128	0.26	-2.1
143,521	-		Sama_0128	0.26	+0.4
143,521	-		Sama_0128	0.26	+0.1
143,564	+		Sama_0128	0.32	-1.3
143,565	-		Sama_0128	0.32	+0.3
143,624	+		Sama_0128	0.41	+1.5
143,624	+		Sama_0128	0.41	-1.8
143,625	-		Sama_0128	0.42	+0.6
143,633	-		Sama_0128	0.43	-2.2
143,634	+		Sama_0128	0.43	-0.2
143,655	+		Sama_0128	0.46	+2.2
143,655	+		Sama_0128	0.46	-1.9
143,656	-		Sama_0128	0.46	-1.5
143,656	-		Sama_0128	0.46	-0.3
143,680	+		Sama_0128	0.50	-1.8
143,747	+		Sama_0128	0.60	-1.0
143,747	+		Sama_0128	0.60	-1.8
143,747	+		Sama_0128	0.60	-1.1
143,747	+		Sama_0128	0.60	+0.8
143,747	+		Sama_0128	0.60	-1.5
143,748	-		Sama_0128	0.60	+2.0
143,748	-		Sama_0128	0.60	+1.2
143,748	-		Sama_0128	0.60	+1.2
143,748	-		Sama_0128	0.60	-1.8
143,755	+		Sama_0128	0.61	-0.2
143,756	-		Sama_0128	0.61	+1.9
143,760	+		Sama_0128	0.62	-2.3
143,760	+		Sama_0128	0.62	-2.2
143,761	-		Sama_0128	0.62	-2.1
143,761	-		Sama_0128	0.62	-1.6
143,761	-		Sama_0128	0.62	-0.2
143,797	+		Sama_0128	0.68	-1.2
143,853	+		Sama_0128	0.76	+0.9
143,853	+		Sama_0128	0.76	-0.8
143,853	+		Sama_0128	0.76	-1.4
143,854	-		Sama_0128	0.76	-0.3
143,854	-		Sama_0128	0.76	+0.9
143,854	-		Sama_0128	0.76	-1.1
143,854	-		Sama_0128	0.76	-0.7
143,884	+		Sama_0128	0.81	+0.2
143,884	+		Sama_0128	0.81	+0.2
143,884	+		Sama_0128	0.81	+0.4
143,885	-		Sama_0128	0.81	-1.8
143,885	-		Sama_0128	0.81	+0.9
143,925	+		Sama_0128	0.87	+0.9
143,926	-		Sama_0128	0.87	+0.1
143,926	-		Sama_0128	0.87	+0.1
143,929	+		Sama_0128	0.88	+0.5
143,929	+		Sama_0128	0.88	-0.1
143,929	+		Sama_0128	0.88	-0.7
143,999	+				-1.4
144,000	-				+0.3
144,000	-				-0.8
144,000	-				-1.0
144,010	+				-1.2
144,010	+				-0.4
144,010	+				-0.1
144,010	+				-1.5
144,010	+				-1.0
144,010	+				-1.3
144,010	+				-1.6
144,010	+				+0.7
144,010	+				-0.5
144,010	+				-1.8
144,011	-				+1.0
144,011	-				-0.8
144,011	-				-1.8
144,011	-				-0.5
144,011	-				-2.3
144,011	-				+1.9
144,011	-				+0.9
144,059	+				-0.5
144,059	+				-2.2
144,060	-				-1.3
144,093	+				-2.3
144,093	+				-1.2
144,093	+				-2.1
144,093	+				-0.7
144,094	-				+1.5
144,094	-				+0.1
144,094	-				-0.2
144,094	-				-1.2
144,094	-				-0.3
144,094	-				-1.9
144,094	-				-0.7
144,095	+				-1.4
144,095	+				+0.1
144,095	+				-1.2
144,095	+				+0.1
144,095	+				-0.8
144,095	+				+0.4
144,095	+				+0.7
144,096	-				-0.8
144,096	-				-1.1
144,096	-				-1.3
144,122	+				-0.6
144,149	+				-1.1
144,149	+				-1.0
144,149	+				+1.2
144,150	-				-0.8
144,151	+				-0.9
144,151	+				+1.9
144,151	+				+0.6
144,152	-				+0.4
144,152	-				-0.3
144,152	-				+0.3
144,152	-				-0.2
144,152	-				+1.8
144,152	-				+0.9
144,161	-				-2.6
144,216	-				+1.2
144,216	-				+0.7
144,221	+				+0.4
144,221	+				+0.4
144,221	+				-0.5
144,221	+				-1.4
144,221	+				-2.4
144,221	+				-0.4
144,221	+				-1.5
144,221	+				-0.7
144,221	+				-1.7
144,221	+				-0.7
144,221	+				+0.2
144,221	+				-1.4
144,221	+				-0.9
144,221	+				-0.3
144,221	+				-0.5
144,221	+				-2.3
144,221	+				-0.5
144,221	+				-1.4
144,221	+				+0.4
144,221	+				+0.9
144,221	+				+0.4
144,221	+				-0.9
144,222	-				-0.5
144,222	-				-1.0
144,222	-				+0.6
144,222	-				+1.4
144,222	-				-0.2
144,222	-				+0.7
144,222	-				+0.5
144,222	-				+1.2
144,222	-				+2.7
144,222	-				+0.6
144,222	-				+0.4
144,222	-				-0.7
144,222	-				+0.7
144,222	-				+0.7
144,222	-				-0.5
144,222	-				+0.1
144,222	-				+0.4
144,222	-				-2.5
144,222	-				+0.7
144,222	-				-0.7
144,222	-				+2.0
144,254	-				+0.7
144,326	+				-0.8
144,327	-				+0.5
144,415	+		Sama_0129	0.18	-1.2
144,415	+		Sama_0129	0.18	-0.5
144,415	+		Sama_0129	0.18	-0.1
144,415	+		Sama_0129	0.18	-0.7
144,415	+		Sama_0129	0.18	+0.9
144,415	+		Sama_0129	0.18	+0.2
144,415	+		Sama_0129	0.18	-2.1
144,415	+		Sama_0129	0.18	+0.5
144,416	-		Sama_0129	0.18	-0.9
144,416	-		Sama_0129	0.18	-2.8
144,416	-		Sama_0129	0.18	+0.2
144,416	-		Sama_0129	0.18	-1.5
144,416	-		Sama_0129	0.18	-0.3
144,416	-		Sama_0129	0.18	-0.3
144,416	-		Sama_0129	0.18	-0.8
144,418	+		Sama_0129	0.18	+0.9
144,418	+		Sama_0129	0.18	-1.0
144,418	+		Sama_0129	0.18	-1.5
144,418	+		Sama_0129	0.18	-0.1
144,418	+		Sama_0129	0.18	-0.8
144,418	+		Sama_0129	0.18	+0.5
144,418	+		Sama_0129	0.18	-0.6
144,418	+		Sama_0129	0.18	-0.8
144,418	+		Sama_0129	0.18	-1.0
144,418	+		Sama_0129	0.18	-0.5
144,418	+		Sama_0129	0.18	+1.7
144,419	-		Sama_0129	0.18	+1.5
144,419	-		Sama_0129	0.18	-1.2
144,419	-		Sama_0129	0.18	+0.2
144,419	-		Sama_0129	0.18	-1.0
144,419	-		Sama_0129	0.18	-0.1
144,419	-		Sama_0129	0.18	-2.0
144,419	-		Sama_0129	0.18	-1.3
144,419	-		Sama_0129	0.18	-0.8
144,419	-		Sama_0129	0.18	-0.6
144,495	+		Sama_0129	0.29	+1.2
144,496	-		Sama_0129	0.29	+0.2
144,496	-		Sama_0129	0.29	+1.0
144,525	+		Sama_0129	0.33	-0.9
144,526	-		Sama_0129	0.33	-1.0
144,526	-		Sama_0129	0.33	-2.1
144,526	-		Sama_0129	0.33	-0.8
144,527	+		Sama_0129	0.33	-0.2
144,527	+		Sama_0129	0.33	-1.5
144,527	+		Sama_0129	0.33	-0.7
144,527	+		Sama_0129	0.33	-1.6
144,527	+		Sama_0129	0.33	-1.4
144,527	+		Sama_0129	0.33	-0.5
144,527	+		Sama_0129	0.33	+0.9
144,527	+		Sama_0129	0.33	-0.3
144,527	+		Sama_0129	0.33	+0.5
144,528	-		Sama_0129	0.33	-1.6
144,528	-		Sama_0129	0.33	-0.1
144,528	-		Sama_0129	0.33	-2.4
144,528	-		Sama_0129	0.33	+0.9
144,528	-		Sama_0129	0.33	-0.8
144,541	+		Sama_0129	0.35	-0.9
144,541	+		Sama_0129	0.35	-0.1
144,541	+		Sama_0129	0.35	+0.1
144,541	+		Sama_0129	0.35	-2.3
144,554	+		Sama_0129	0.37	+0.5
144,555	-		Sama_0129	0.37	-0.2
144,568	+		Sama_0129	0.39	-1.0
144,568	+		Sama_0129	0.39	-0.5
144,568	+		Sama_0129	0.39	+1.3
144,653	+		Sama_0129	0.50	-1.3
144,653	+		Sama_0129	0.50	-2.3
144,654	-		Sama_0129	0.50	+0.5
144,654	-		Sama_0129	0.50	-2.1
144,654	-		Sama_0129	0.50	-0.1
144,654	-		Sama_0129	0.50	+0.2
144,669	-		Sama_0129	0.52	-1.3
144,676	+		Sama_0129	0.53	+0.7
144,676	+		Sama_0129	0.53	+0.5
144,676	+		Sama_0129	0.53	-0.2
144,676	+		Sama_0129	0.53	-1.4
144,676	+		Sama_0129	0.53	-1.8
144,676	+		Sama_0129	0.53	+0.9
144,676	+		Sama_0129	0.53	-1.3
144,676	+		Sama_0129	0.53	-1.1
144,676	+		Sama_0129	0.53	-2.0
144,676	+		Sama_0129	0.53	-1.8
144,677	-		Sama_0129	0.53	-1.3
144,677	-		Sama_0129	0.53	-0.8
144,680	+		Sama_0129	0.54	-2.1
144,680	+		Sama_0129	0.54	+0.1
144,680	+		Sama_0129	0.54	-1.6
144,680	+		Sama_0129	0.54	-2.8
144,680	+		Sama_0129	0.54	-0.1
144,680	+		Sama_0129	0.54	+1.7
144,680	+		Sama_0129	0.54	-0.1
144,680	+		Sama_0129	0.54	-0.4
144,680	+		Sama_0129	0.54	-0.9
144,680	+		Sama_0129	0.54	+0.5
144,681	-		Sama_0129	0.54	-0.6
144,681	-		Sama_0129	0.54	-0.3
144,681	-		Sama_0129	0.54	-0.1
144,681	-		Sama_0129	0.54	-1.2
144,681	-		Sama_0129	0.54	+0.2
144,681	-		Sama_0129	0.54	-1.6
144,681	-		Sama_0129	0.54	+0.9
144,681	-		Sama_0129	0.54	-0.8
144,681	-		Sama_0129	0.54	+0.5
144,685	+		Sama_0129	0.55	+1.7
144,685	+		Sama_0129	0.55	-1.0
144,685	+		Sama_0129	0.55	+0.7
144,685	+		Sama_0129	0.55	-0.4
144,686	-		Sama_0129	0.55	-0.2
144,686	-		Sama_0129	0.55	+1.1
144,686	-		Sama_0129	0.55	-0.2
144,710	-		Sama_0129	0.58	+0.2
144,718	+		Sama_0129	0.59	+1.4
144,718	+		Sama_0129	0.59	-0.8
144,718	+		Sama_0129	0.59	-0.8
144,718	+		Sama_0129	0.59	-0.6
144,718	+		Sama_0129	0.59	-0.7
144,718	+		Sama_0129	0.59	-0.7
144,718	+		Sama_0129	0.59	+2.1
144,718	+		Sama_0129	0.59	-0.6
144,719	-		Sama_0129	0.59	-1.5
144,719	-		Sama_0129	0.59	-0.3
144,719	-		Sama_0129	0.59	-0.2
144,719	-		Sama_0129	0.59	+0.2
144,719	-		Sama_0129	0.59	+0.7
144,719	-		Sama_0129	0.59	-2.0
144,719	-		Sama_0129	0.59	-1.3
144,719	-		Sama_0129	0.59	-0.7
144,721	+		Sama_0129	0.59	+0.1
144,721	+		Sama_0129	0.59	+0.9
144,721	+		Sama_0129	0.59	-1.4
144,721	+		Sama_0129	0.59	-2.0
144,721	+		Sama_0129	0.59	-1.3
144,721	+		Sama_0129	0.59	+1.4
144,721	+		Sama_0129	0.59	-2.0
144,722	-		Sama_0129	0.60	-1.5
144,722	-		Sama_0129	0.60	-0.3
144,722	-		Sama_0129	0.60	-0.0
144,722	-		Sama_0129	0.60	+0.9
144,722	-		Sama_0129	0.60	-1.1
144,747	+		Sama_0129	0.63	+0.2
144,747	+		Sama_0129	0.63	+2.2
144,747	+		Sama_0129	0.63	-0.5
144,747	+		Sama_0129	0.63	-0.9
144,747	+		Sama_0129	0.63	-0.5
144,747	+		Sama_0129	0.63	-0.3
144,748	-		Sama_0129	0.63	-1.0
144,748	-		Sama_0129	0.63	+0.4
144,748	-		Sama_0129	0.63	+0.8
144,748	-		Sama_0129	0.63	+0.3
144,748	-		Sama_0129	0.63	+0.2
144,774	+		Sama_0129	0.67	-0.5
144,774	+		Sama_0129	0.67	+1.7
144,794	-		Sama_0129	0.69	+0.5
144,825	-		Sama_0129	0.74	+0.0
144,942	+		Sama_0129	0.90	-1.6
144,943	-		Sama_0129	0.90	-0.5
144,953	+				-1.4
144,954	-				-0.3
145,073	-				+0.1
145,100	+				-0.9
145,100	+				+0.2
145,100	+				-0.9
145,117	+				+2.2
145,117	+				+0.7
145,118	-				-0.2
145,118	-				-1.0
145,118	-				+0.9
145,118	-				-2.1
145,118	-				+0.7
145,163	+				-1.5
145,272	+		Sama_0130	0.14	+0.4
145,285	+		Sama_0130	0.15	+0.0
145,285	+		Sama_0130	0.15	+0.3
145,285	+		Sama_0130	0.15	-1.2
145,286	-		Sama_0130	0.15	-1.6
145,286	-		Sama_0130	0.15	+0.1
145,286	-		Sama_0130	0.15	+1.7
145,287	+		Sama_0130	0.15	+1.1
145,287	+		Sama_0130	0.15	-0.0
145,288	-		Sama_0130	0.15	-1.3
145,288	-		Sama_0130	0.15	-0.7
145,288	-		Sama_0130	0.15	-1.7
145,288	-		Sama_0130	0.15	-1.2
145,288	-		Sama_0130	0.15	-0.1
145,288	-		Sama_0130	0.15	-0.8
145,370	+		Sama_0130	0.21	-2.3
145,370	+		Sama_0130	0.21	+0.2
145,371	-		Sama_0130	0.21	-1.0
145,371	-		Sama_0130	0.21	+1.7
145,371	-		Sama_0130	0.21	+0.5
145,371	-		Sama_0130	0.21	-2.4
145,371	-		Sama_0130	0.21	-0.1
145,371	-		Sama_0130	0.21	-0.3
145,444	+		Sama_0130	0.27	+1.2
145,476	+		Sama_0130	0.29	+1.7
145,476	+		Sama_0130	0.29	-0.6
145,476	+		Sama_0130	0.29	-0.0
145,476	+		Sama_0130	0.29	+2.2
145,476	+		Sama_0130	0.29	-0.5
145,476	+		Sama_0130	0.29	+1.2
145,477	-		Sama_0130	0.29	-0.6
145,477	-		Sama_0130	0.29	-0.6
145,477	-		Sama_0130	0.29	-1.7
145,477	-		Sama_0130	0.29	-1.5
145,477	-		Sama_0130	0.29	-1.6
145,477	-		Sama_0130	0.29	+0.3
145,477	-		Sama_0130	0.29	-0.2
145,505	+		Sama_0130	0.31	-2.2
145,505	+		Sama_0130	0.31	+0.8
145,505	+		Sama_0130	0.31	-1.2
145,506	-		Sama_0130	0.31	-0.1
145,506	-		Sama_0130	0.31	-1.2
145,506	-		Sama_0130	0.31	+0.2
145,506	-		Sama_0130	0.31	-0.6
145,506	-		Sama_0130	0.31	+0.2
145,506	-		Sama_0130	0.31	-1.8
145,544	-		Sama_0130	0.34	-0.1
145,556	+		Sama_0130	0.35	+1.1
145,556	+		Sama_0130	0.35	+1.2
145,557	-		Sama_0130	0.35	-0.1
145,557	-		Sama_0130	0.35	-0.8
145,557	-		Sama_0130	0.35	-2.5
145,557	-		Sama_0130	0.35	-0.2
145,557	-		Sama_0130	0.35	-1.4
145,649	+		Sama_0130	0.42	-2.4
145,649	+		Sama_0130	0.42	-0.9
145,649	+		Sama_0130	0.42	-0.6
145,649	+		Sama_0130	0.42	+0.9
145,650	-		Sama_0130	0.42	-1.5
145,650	-		Sama_0130	0.42	-2.2
145,650	-		Sama_0130	0.42	-0.8
145,650	-		Sama_0130	0.42	-0.9
145,650	-		Sama_0130	0.42	+0.1
145,653	+		Sama_0130	0.42	-1.2
145,653	+		Sama_0130	0.42	+1.0
145,653	+		Sama_0130	0.42	-0.8
145,653	+		Sama_0130	0.42	-0.3
145,654	-		Sama_0130	0.42	-0.3
145,654	-		Sama_0130	0.42	-0.8
145,654	-		Sama_0130	0.42	-0.1
145,654	-		Sama_0130	0.42	-1.5
145,654	-		Sama_0130	0.42	-0.6
145,654	-		Sama_0130	0.42	-0.1
145,654	-		Sama_0130	0.42	-1.7
145,654	-		Sama_0130	0.42	+0.4
145,678	+		Sama_0130	0.44	-0.3
145,679	-		Sama_0130	0.44	-0.0
145,901	+		Sama_0130	0.60	-1.0
145,901	+		Sama_0130	0.60	-1.7
145,907	+		Sama_0130	0.61	-0.0
145,907	+		Sama_0130	0.61	-0.2
145,908	-		Sama_0130	0.61	-1.2
145,908	-		Sama_0130	0.61	-1.0
145,944	-		Sama_0130	0.64	-0.6
146,006	-		Sama_0130	0.68	-0.3
146,012	-		Sama_0130	0.69	-1.7
146,012	-		Sama_0130	0.69	-1.6