Strain Fitness in Shewanella amazonensis SB2B around Sama_0108

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
120,743	+		Sama_0107	0.38	-0.1
120,743	+		Sama_0107	0.38	-0.3
120,750	-		Sama_0107	0.38	-0.5
120,787	+		Sama_0107	0.40	+0.1
120,787	+		Sama_0107	0.40	+0.7
120,787	+		Sama_0107	0.40	-1.2
120,787	+		Sama_0107	0.40	-1.2
120,788	-		Sama_0107	0.40	-1.7
120,788	-		Sama_0107	0.40	-1.7
120,788	-		Sama_0107	0.40	-2.3
120,788	-		Sama_0107	0.40	+1.2
120,829	-		Sama_0107	0.43	+1.2
120,829	-		Sama_0107	0.43	-3.5
120,829	-		Sama_0107	0.43	-2.3
120,834	-		Sama_0107	0.43	+0.4
120,834	-		Sama_0107	0.43	-1.6
120,868	+		Sama_0107	0.46	-1.4
120,868	+		Sama_0107	0.46	-1.8
120,869	-		Sama_0107	0.46	+0.7
120,869	-		Sama_0107	0.46	-0.5
120,869	-		Sama_0107	0.46	-1.6
120,898	+		Sama_0107	0.47	-0.1
120,898	+		Sama_0107	0.47	+0.2
120,898	+		Sama_0107	0.47	-0.8
120,898	+		Sama_0107	0.47	-0.3
120,898	+		Sama_0107	0.47	-0.8
120,898	+		Sama_0107	0.47	-2.6
120,899	-		Sama_0107	0.47	-1.2
120,899	-		Sama_0107	0.47	-1.0
120,899	-		Sama_0107	0.47	-0.1
120,899	-		Sama_0107	0.47	+0.1
120,899	-		Sama_0107	0.47	-1.8
120,899	-		Sama_0107	0.47	+0.9
120,899	-		Sama_0107	0.47	-0.3
120,899	-		Sama_0107	0.47	+0.9
120,899	-		Sama_0107	0.47	-0.6
120,899	-		Sama_0107	0.47	-1.0
120,903	+		Sama_0107	0.48	-1.3
120,903	+		Sama_0107	0.48	+0.9
120,903	+		Sama_0107	0.48	-1.2
120,904	-		Sama_0107	0.48	+0.2
120,904	-		Sama_0107	0.48	-2.2
120,904	-		Sama_0107	0.48	-0.2
120,904	-		Sama_0107	0.48	-0.7
120,904	-		Sama_0107	0.48	-1.7
120,904	-		Sama_0107	0.48	-0.1
120,904	-		Sama_0107	0.48	-1.6
120,904	-		Sama_0107	0.48	+0.1
120,904	-		Sama_0107	0.48	+0.1
120,918	+		Sama_0107	0.49	-1.2
120,918	+		Sama_0107	0.49	+0.1
120,918	+		Sama_0107	0.49	-0.7
120,918	+		Sama_0107	0.49	+0.4
120,918	+		Sama_0107	0.49	+0.4
120,919	-		Sama_0107	0.49	-0.6
120,919	-		Sama_0107	0.49	+0.9
120,988	+		Sama_0107	0.53	+0.7
121,013	+		Sama_0107	0.55	+1.2
121,013	+		Sama_0107	0.55	-0.5
121,013	+		Sama_0107	0.55	-0.8
121,013	+		Sama_0107	0.55	-0.1
121,013	+		Sama_0107	0.55	-0.9
121,013	+		Sama_0107	0.55	-0.8
121,013	+		Sama_0107	0.55	-2.3
121,014	-		Sama_0107	0.55	-0.6
121,014	-		Sama_0107	0.55	-1.3
121,014	-		Sama_0107	0.55	-1.2
121,014	-		Sama_0107	0.55	-1.8
121,014	-		Sama_0107	0.55	+0.7
121,020	-		Sama_0107	0.55	+1.7
121,020	-		Sama_0107	0.55	-2.0
121,106	-		Sama_0107	0.61	-3.0
121,108	+		Sama_0107	0.61	-0.2
121,108	+		Sama_0107	0.61	-0.7
121,108	+		Sama_0107	0.61	-1.0
121,108	+		Sama_0107	0.61	-1.3
121,108	+		Sama_0107	0.61	-1.2
121,108	+		Sama_0107	0.61	-2.0
121,108	+		Sama_0107	0.61	-1.4
121,108	+		Sama_0107	0.61	-1.2
121,108	+		Sama_0107	0.61	+0.7
121,108	+		Sama_0107	0.61	-0.1
121,108	+		Sama_0107	0.61	+0.4
121,109	-		Sama_0107	0.61	-0.5
121,109	-		Sama_0107	0.61	-2.7
121,109	-		Sama_0107	0.61	+0.4
121,109	-		Sama_0107	0.61	-0.8
121,109	-		Sama_0107	0.61	-0.5
121,109	-		Sama_0107	0.61	-1.2
121,109	-		Sama_0107	0.61	-1.0
121,109	-		Sama_0107	0.61	-1.3
121,109	-		Sama_0107	0.61	-0.9
121,109	-		Sama_0107	0.61	-0.1
121,109	-		Sama_0107	0.61	-1.6
121,112	+		Sama_0107	0.61	-0.8
121,112	+		Sama_0107	0.61	-0.8
121,112	+		Sama_0107	0.61	-0.8
121,112	+		Sama_0107	0.61	+0.7
121,112	+		Sama_0107	0.61	-0.6
121,112	+		Sama_0107	0.61	-0.8
121,113	-		Sama_0107	0.61	-2.3
121,113	-		Sama_0107	0.61	+0.2
121,113	-		Sama_0107	0.61	-0.3
121,113	-		Sama_0107	0.61	-2.0
121,113	-		Sama_0107	0.61	-1.1
121,132	+		Sama_0107	0.62	-0.2
121,133	-		Sama_0107	0.62	-1.9
121,178	-		Sama_0107	0.65	-1.0
121,178	-		Sama_0107	0.65	-1.3
121,178	-		Sama_0107	0.65	-1.3
121,197	-		Sama_0107	0.66	+1.7
121,197	-		Sama_0107	0.66	-0.8
121,228	-		Sama_0107	0.68	-1.0
121,228	-		Sama_0107	0.68	-1.7
121,230	+		Sama_0107	0.68	+1.2
121,230	+		Sama_0107	0.68	+0.2
121,230	+		Sama_0107	0.68	-2.1
121,348	+		Sama_0107	0.76	-1.1
121,348	+		Sama_0107	0.76	-1.3
121,348	+		Sama_0107	0.76	+0.7
121,349	-		Sama_0107	0.76	-0.1
121,349	-		Sama_0107	0.76	+7.7
121,349	-		Sama_0107	0.76	-0.8
121,349	-		Sama_0107	0.76	-1.9
121,427	+		Sama_0107	0.81	-0.1
121,427	+		Sama_0107	0.81	+0.4
121,428	-		Sama_0107	0.81	-1.1
121,429	+		Sama_0107	0.81	+0.9
121,429	+		Sama_0107	0.81	+0.9
121,429	+		Sama_0107	0.81	-1.1
121,429	+		Sama_0107	0.81	-0.8
121,429	+		Sama_0107	0.81	-0.3
121,430	-		Sama_0107	0.81	+0.1
121,430	-		Sama_0107	0.81	-2.2
121,430	-		Sama_0107	0.81	-1.8
121,430	-		Sama_0107	0.81	-1.0
121,430	-		Sama_0107	0.81	-0.2
121,430	-		Sama_0107	0.81	-0.3
121,430	-		Sama_0107	0.81	-1.9
121,430	-		Sama_0107	0.81	-0.2
121,430	-		Sama_0107	0.81	-0.3
121,430	-		Sama_0107	0.81	-0.8
121,471	+		Sama_0107	0.84	-0.7
121,471	+		Sama_0107	0.84	-0.3
121,471	+		Sama_0107	0.84	-1.0
121,471	+		Sama_0107	0.84	-2.3
121,471	+		Sama_0107	0.84	+0.3
121,510	+		Sama_0107	0.86	+1.2
121,510	+		Sama_0107	0.86	-0.3
121,510	+		Sama_0107	0.86	+1.2
121,510	+		Sama_0107	0.86	-0.7
121,511	-		Sama_0107	0.86	-1.8
121,511	-		Sama_0107	0.86	-1.5
121,515	+		Sama_0107	0.86	+0.7
121,515	+		Sama_0107	0.86	-2.2
121,515	+		Sama_0107	0.86	-1.7
121,515	+		Sama_0107	0.86	+0.4
121,515	+		Sama_0107	0.86	-0.6
121,515	+		Sama_0107	0.86	+0.2
121,516	-		Sama_0107	0.86	-0.5
121,516	-		Sama_0107	0.86	-0.5
121,516	-		Sama_0107	0.86	-0.5
121,516	-		Sama_0107	0.86	-2.3
121,516	-		Sama_0107	0.86	-0.7
121,529	-		Sama_0107	0.87	-0.8
121,552	+		Sama_0107	0.89	-1.0
121,552	+		Sama_0107	0.89	-0.9
121,553	-		Sama_0107	0.89	-1.6
121,611	+				+0.4
121,612	-				-2.3
121,718	+				+0.3
121,719	-				-0.1
121,719	-				-1.1
121,719	-				-0.4
121,719	-				-1.5
121,726	+				-1.1
121,726	+				+0.7
121,726	+				-1.0
121,727	-				-0.3
121,727	-				-0.2
121,727	-				-1.1
121,727	-				-1.0
121,727	-				+2.2
121,727	-				-0.8
121,727	-				-0.8
121,739	+				+0.9
121,739	+				+0.1
121,739	+				-0.3
121,739	+				-1.3
121,740	-				-1.0
121,740	-				-0.1
121,740	-				-1.3
121,740	-				+0.4
121,740	-				-1.6
121,759	-				-1.2
121,825	-		Sama_0108	0.23	-0.8
121,826	+		Sama_0108	0.23	+0.7
121,827	-		Sama_0108	0.24	-1.7
121,875	-		Sama_0108	0.37	+0.1
121,875	-		Sama_0108	0.37	-1.4
121,875	-		Sama_0108	0.37	+0.2
121,875	-		Sama_0108	0.37	-1.7
121,875	-		Sama_0108	0.37	-0.5
121,920	+		Sama_0108	0.49	-0.1
121,920	+		Sama_0108	0.49	-0.2
121,920	+		Sama_0108	0.49	-0.3
121,920	+		Sama_0108	0.49	-1.5
121,920	+		Sama_0108	0.49	+0.9
121,920	+		Sama_0108	0.49	+0.2
121,921	-		Sama_0108	0.49	+0.0
121,921	-		Sama_0108	0.49	-0.2
121,921	-		Sama_0108	0.49	-0.1
121,921	-		Sama_0108	0.49	-0.6
121,921	-		Sama_0108	0.49	-1.3
121,921	-		Sama_0108	0.49	+0.5
121,921	-		Sama_0108	0.49	+0.9
121,921	-		Sama_0108	0.49	+0.9
121,921	-		Sama_0108	0.49	-0.8
121,921	-		Sama_0108	0.49	+0.8
121,931	-		Sama_0108	0.51	-0.1
121,931	-		Sama_0108	0.51	+0.3
121,931	-		Sama_0108	0.51	-1.7
121,931	-		Sama_0108	0.51	-1.6
121,931	-		Sama_0108	0.51	-0.1
121,931	-		Sama_0108	0.51	-0.6
121,944	+		Sama_0108	0.55	-1.3
121,945	-		Sama_0108	0.55	+0.2
121,945	-		Sama_0108	0.55	-1.2
121,945	-		Sama_0108	0.55	-2.6
121,956	+		Sama_0108	0.58	-0.5
121,957	-		Sama_0108	0.58	-0.1
121,962	+		Sama_0108	0.60	+0.4
121,962	+		Sama_0108	0.60	-2.0
121,963	-		Sama_0108	0.60	+0.2
121,963	-		Sama_0108	0.60	-0.8
121,963	-		Sama_0108	0.60	-1.4
122,006	+		Sama_0108	0.71	-0.8
122,006	+		Sama_0108	0.71	-1.1
122,007	-		Sama_0108	0.72	-0.6
122,007	-		Sama_0108	0.72	-2.1
122,054	+		Sama_0108	0.84	+0.7
122,054	+		Sama_0108	0.84	-1.2
122,054	+		Sama_0108	0.84	-2.1
122,054	+		Sama_0108	0.84	-0.5
122,054	+		Sama_0108	0.84	-0.6
122,054	+		Sama_0108	0.84	-0.8
122,055	-		Sama_0108	0.85	-0.5
122,055	-		Sama_0108	0.85	-0.1
122,055	-		Sama_0108	0.85	-1.5
122,095	+				-2.6
122,095	+				+0.7
122,096	-				+1.1
122,099	-				+1.1
122,099	-				+0.2
122,099	-				-0.8
122,099	-				+0.4
122,099	-				-2.3
122,099	-				-0.2
122,129	+				+1.7
122,130	-				+0.8
122,130	-				-1.3
122,130	-				-0.5
122,130	-				+0.7
122,137	+				-0.1
122,138	-				+0.4
122,138	-				+0.9
122,142	+				+0.4
122,142	+				+2.2
122,142	+				-0.7
122,142	+				-0.2
122,143	-				+3.0
122,143	-				+1.4
122,143	-				+1.3
122,143	-				+3.7
122,143	-				+0.2
122,143	-				+0.9
122,143	-				+2.6
122,143	-				+0.7
122,259	-		Sama_0109	0.10	+2.6
122,259	-		Sama_0109	0.10	+2.9
122,259	-		Sama_0109	0.10	+2.8
122,259	-		Sama_0109	0.10	+2.9
122,259	-		Sama_0109	0.10	+2.3
122,261	+		Sama_0109	0.10	+1.6
122,261	+		Sama_0109	0.10	+1.9
122,261	+		Sama_0109	0.10	+1.5
122,262	-		Sama_0109	0.10	+2.9
122,262	-		Sama_0109	0.10	+3.0
122,262	-		Sama_0109	0.10	+3.9
122,262	-		Sama_0109	0.10	+3.8
122,263	+		Sama_0109	0.11	+2.4
122,263	+		Sama_0109	0.11	+2.2
122,263	+		Sama_0109	0.11	+2.7
122,263	+		Sama_0109	0.11	+0.1
122,264	-		Sama_0109	0.11	+3.1
122,264	-		Sama_0109	0.11	+2.9
122,264	-		Sama_0109	0.11	+2.2
122,264	-		Sama_0109	0.11	+1.4
122,264	-		Sama_0109	0.11	+3.0
122,380	+		Sama_0109	0.20	+0.9
122,380	+		Sama_0109	0.20	-0.5
122,380	+		Sama_0109	0.20	+2.4
122,380	+		Sama_0109	0.20	+1.2
122,380	+		Sama_0109	0.20	+0.2
122,381	-		Sama_0109	0.20	+3.1
122,381	-		Sama_0109	0.20	+3.5
122,381	-		Sama_0109	0.20	+2.2
122,381	-		Sama_0109	0.20	+2.2
122,381	-		Sama_0109	0.20	+3.2
122,440	+		Sama_0109	0.25	+2.9
122,483	+		Sama_0109	0.29	-0.6
122,483	+		Sama_0109	0.29	+3.2
122,484	-		Sama_0109	0.29	+2.8
122,489	+		Sama_0109	0.29	+1.6
122,489	+		Sama_0109	0.29	+1.5
122,489	+		Sama_0109	0.29	+1.8
122,489	+		Sama_0109	0.29	+4.2
122,489	+		Sama_0109	0.29	+1.0
122,489	+		Sama_0109	0.29	+0.5
122,489	+		Sama_0109	0.29	+2.6
122,489	+		Sama_0109	0.29	+2.9
122,489	+		Sama_0109	0.29	+1.1
122,489	+		Sama_0109	0.29	+2.3
122,489	+		Sama_0109	0.29	+2.5
122,490	-		Sama_0109	0.29	+3.7
122,490	-		Sama_0109	0.29	+3.4
122,490	-		Sama_0109	0.29	+2.9
122,490	-		Sama_0109	0.29	+2.7
122,490	-		Sama_0109	0.29	+3.2
122,490	-		Sama_0109	0.29	+4.1
122,490	-		Sama_0109	0.29	+3.1
122,490	-		Sama_0109	0.29	+3.0
122,492	+		Sama_0109	0.29	+2.8
122,492	+		Sama_0109	0.29	+2.0
122,493	-		Sama_0109	0.30	+2.8
122,493	-		Sama_0109	0.30	+4.6
122,578	+		Sama_0109	0.37	-0.3
122,633	+		Sama_0109	0.41	+1.4
122,633	+		Sama_0109	0.41	+0.4
122,633	+		Sama_0109	0.41	+3.0
122,633	+		Sama_0109	0.41	+3.0
122,634	-		Sama_0109	0.41	+2.4
122,634	-		Sama_0109	0.41	+4.5
122,634	-		Sama_0109	0.41	+2.7
122,634	-		Sama_0109	0.41	+4.4
122,634	-		Sama_0109	0.41	+3.4
122,634	-		Sama_0109	0.41	+3.0
122,634	-		Sama_0109	0.41	+3.5
122,634	-		Sama_0109	0.41	+3.3
122,635	+		Sama_0109	0.41	+2.8
122,635	+		Sama_0109	0.41	+2.2
122,635	+		Sama_0109	0.41	+2.2
122,635	+		Sama_0109	0.41	+4.4
122,635	+		Sama_0109	0.41	+4.1
122,636	-		Sama_0109	0.41	+1.8
122,636	-		Sama_0109	0.41	+2.9
122,636	-		Sama_0109	0.41	+1.9
122,692	-		Sama_0109	0.46	+3.2
122,715	+		Sama_0109	0.48	+3.2
122,715	+		Sama_0109	0.48	+2.2
122,715	+		Sama_0109	0.48	+2.3
122,715	+		Sama_0109	0.48	+2.2
122,715	+		Sama_0109	0.48	+2.0
122,716	-		Sama_0109	0.48	+2.5
122,716	-		Sama_0109	0.48	+4.2
122,716	-		Sama_0109	0.48	+3.0
122,716	-		Sama_0109	0.48	+4.0
122,716	-		Sama_0109	0.48	+3.1
122,716	-		Sama_0109	0.48	+2.8
122,718	+		Sama_0109	0.48	+2.7
122,718	+		Sama_0109	0.48	+2.3
122,718	+		Sama_0109	0.48	+2.2
122,719	-		Sama_0109	0.48	+1.4
122,719	-		Sama_0109	0.48	+1.7
122,719	-		Sama_0109	0.48	+2.9
122,719	-		Sama_0109	0.48	+4.4
122,719	-		Sama_0109	0.48	+1.8
122,719	-		Sama_0109	0.48	+3.5
122,785	+		Sama_0109	0.54	+2.2
122,785	+		Sama_0109	0.54	+2.4
122,785	+		Sama_0109	0.54	+2.6
122,786	-		Sama_0109	0.54	+2.5
122,786	-		Sama_0109	0.54	+2.6
122,786	-		Sama_0109	0.54	+3.0
122,798	+		Sama_0109	0.55	+2.0
122,798	+		Sama_0109	0.55	+0.7
122,798	+		Sama_0109	0.55	+2.4
122,798	+		Sama_0109	0.55	+0.2
122,799	-		Sama_0109	0.55	+2.4
122,799	-		Sama_0109	0.55	+2.3
122,799	-		Sama_0109	0.55	+1.7
122,799	-		Sama_0109	0.55	+3.0
122,808	+		Sama_0109	0.56	+1.2
122,808	+		Sama_0109	0.56	+0.2
122,809	-		Sama_0109	0.56	+4.2
122,809	-		Sama_0109	0.56	+4.2
122,809	-		Sama_0109	0.56	+2.3
122,816	-		Sama_0109	0.56	+2.3
122,816	-		Sama_0109	0.56	+2.9
122,816	-		Sama_0109	0.56	+2.9
122,816	-		Sama_0109	0.56	+2.7
122,865	+		Sama_0109	0.60	+2.5
122,865	+		Sama_0109	0.60	+1.3
122,865	+		Sama_0109	0.60	+3.4
122,865	+		Sama_0109	0.60	+1.9
122,865	+		Sama_0109	0.60	+1.3
122,865	+		Sama_0109	0.60	+0.9
122,865	+		Sama_0109	0.60	+1.7
122,866	-		Sama_0109	0.60	+2.7
122,866	-		Sama_0109	0.60	+3.8
122,866	-		Sama_0109	0.60	+3.2
122,885	-		Sama_0109	0.62	+2.4
122,902	+		Sama_0109	0.63	+1.9
122,920	+		Sama_0109	0.65	+1.1
122,920	+		Sama_0109	0.65	+0.1
122,920	+		Sama_0109	0.65	+1.4
122,968	+		Sama_0109	0.69	+2.7
122,968	+		Sama_0109	0.69	+1.1
122,968	+		Sama_0109	0.69	+2.1
122,969	-		Sama_0109	0.69	+3.0
123,041	-		Sama_0109	0.75	+3.2
123,041	-		Sama_0109	0.75	+1.8
123,041	-		Sama_0109	0.75	+2.2
123,079	+		Sama_0109	0.78	+2.6
123,079	+		Sama_0109	0.78	+3.2
123,079	+		Sama_0109	0.78	+1.4
123,080	-		Sama_0109	0.78	+2.0
123,080	-		Sama_0109	0.78	+2.0
123,080	-		Sama_0109	0.78	+3.9
123,080	-		Sama_0109	0.78	+2.8