Strain Fitness in Shewanella amazonensis SB2B around Sama_0098

Experiment: Fusidic 0.0625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.0625 mg/ml
109,930	+	tdh	Sama_0097	0.14	+0.0
109,930	+	tdh	Sama_0097	0.14	-0.2
109,930	+	tdh	Sama_0097	0.14	-1.2
109,931	-	tdh	Sama_0097	0.14	-0.2
109,957	+	tdh	Sama_0097	0.16	-1.4
109,958	-	tdh	Sama_0097	0.16	-0.3
109,958	-	tdh	Sama_0097	0.16	+0.9
109,958	-	tdh	Sama_0097	0.16	+1.2
109,958	-	tdh	Sama_0097	0.16	-1.1
109,958	-	tdh	Sama_0097	0.16	-0.8
110,027	+	tdh	Sama_0097	0.23	+0.4
110,028	-	tdh	Sama_0097	0.23	-0.2
110,190	-	tdh	Sama_0097	0.39	-0.3
110,222	-	tdh	Sama_0097	0.42	-0.5
110,289	-	tdh	Sama_0097	0.49	-1.6
110,289	-	tdh	Sama_0097	0.49	+0.2
110,312	+	tdh	Sama_0097	0.51	-0.6
110,312	+	tdh	Sama_0097	0.51	-1.0
110,313	-	tdh	Sama_0097	0.51	-0.1
110,328	+	tdh	Sama_0097	0.52	-0.3
110,363	+	tdh	Sama_0097	0.56	+0.4
110,363	+	tdh	Sama_0097	0.56	-0.5
110,402	+	tdh	Sama_0097	0.60	-1.7
110,402	+	tdh	Sama_0097	0.60	+0.3
110,403	-	tdh	Sama_0097	0.60	+1.7
110,403	-	tdh	Sama_0097	0.60	-0.5
110,403	-	tdh	Sama_0097	0.60	-1.2
110,446	+	tdh	Sama_0097	0.64	+1.0
110,446	+	tdh	Sama_0097	0.64	-0.8
110,446	+	tdh	Sama_0097	0.64	+0.1
110,447	-	tdh	Sama_0097	0.64	+1.2
110,447	-	tdh	Sama_0097	0.64	-0.5
110,472	+	tdh	Sama_0097	0.66	+2.1
110,473	-	tdh	Sama_0097	0.66	+0.7
110,473	-	tdh	Sama_0097	0.66	-1.7
110,473	-	tdh	Sama_0097	0.66	+0.2
110,490	-	tdh	Sama_0097	0.68	-0.6
110,526	-	tdh	Sama_0097	0.72	-1.1
110,526	-	tdh	Sama_0097	0.72	-0.0
110,546	+	tdh	Sama_0097	0.74	-0.6
110,546	+	tdh	Sama_0097	0.74	-0.5
110,546	+	tdh	Sama_0097	0.74	-0.5
110,547	-	tdh	Sama_0097	0.74	+0.2
110,623	+	tdh	Sama_0097	0.81	+0.2
110,623	+	tdh	Sama_0097	0.81	+0.9
110,623	+	tdh	Sama_0097	0.81	-1.1
110,624	-	tdh	Sama_0097	0.81	-0.1
110,624	-	tdh	Sama_0097	0.81	+0.7
110,634	+	tdh	Sama_0097	0.82	-1.1
110,634	+	tdh	Sama_0097	0.82	+0.8
110,634	+	tdh	Sama_0097	0.82	-2.5
110,634	+	tdh	Sama_0097	0.82	+0.4
110,635	-	tdh	Sama_0097	0.82	-1.2
110,635	-	tdh	Sama_0097	0.82	-1.6
110,635	-	tdh	Sama_0097	0.82	+0.7
110,635	-	tdh	Sama_0097	0.82	-1.6
110,635	-	tdh	Sama_0097	0.82	-0.2
110,635	-	tdh	Sama_0097	0.82	+0.4
110,635	-	tdh	Sama_0097	0.82	-0.5
110,635	-	tdh	Sama_0097	0.82	+0.9
110,637	+	tdh	Sama_0097	0.82	-0.3
110,637	+	tdh	Sama_0097	0.82	+0.8
110,637	+	tdh	Sama_0097	0.82	-0.8
110,637	+	tdh	Sama_0097	0.82	-0.1
110,637	+	tdh	Sama_0097	0.82	+0.8
110,637	+	tdh	Sama_0097	0.82	+3.2
110,637	+	tdh	Sama_0097	0.82	-1.7
110,638	-	tdh	Sama_0097	0.83	+0.4
110,638	-	tdh	Sama_0097	0.83	+0.0
110,638	-	tdh	Sama_0097	0.83	-0.8
110,638	-	tdh	Sama_0097	0.83	-0.1
110,638	-	tdh	Sama_0097	0.83	+0.2
110,638	-	tdh	Sama_0097	0.83	+0.5
110,638	-	tdh	Sama_0097	0.83	+0.4
110,638	-	tdh	Sama_0097	0.83	-0.1
110,638	-	tdh	Sama_0097	0.83	-0.8
110,638	-	tdh	Sama_0097	0.83	-0.4
110,638	-	tdh	Sama_0097	0.83	-1.9
110,638	-	tdh	Sama_0097	0.83	-0.1
110,638	-	tdh	Sama_0097	0.83	+0.0
110,642	+	tdh	Sama_0097	0.83	+2.2
110,642	+	tdh	Sama_0097	0.83	-0.3
110,642	+	tdh	Sama_0097	0.83	-0.5
110,643	-	tdh	Sama_0097	0.83	+5.1
110,683	+	tdh	Sama_0097	0.87	+1.9
110,683	+	tdh	Sama_0097	0.87	+2.2
110,683	+	tdh	Sama_0097	0.87	-1.7
110,683	+	tdh	Sama_0097	0.87	+0.8
110,683	+	tdh	Sama_0097	0.87	-0.2
110,683	+	tdh	Sama_0097	0.87	+1.1
110,684	-	tdh	Sama_0097	0.87	+0.5
110,684	-	tdh	Sama_0097	0.87	-1.3
110,684	-	tdh	Sama_0097	0.87	-1.3
110,684	-	tdh	Sama_0097	0.87	-0.3
110,684	-	tdh	Sama_0097	0.87	-1.7
110,684	-	tdh	Sama_0097	0.87	+1.2
110,687	+	tdh	Sama_0097	0.87	-1.4
110,687	+	tdh	Sama_0097	0.87	+0.2
110,687	+	tdh	Sama_0097	0.87	+0.4
110,687	+	tdh	Sama_0097	0.87	+0.9
110,687	+	tdh	Sama_0097	0.87	+1.5
110,687	+	tdh	Sama_0097	0.87	-1.7
110,688	-	tdh	Sama_0097	0.87	+0.7
110,688	-	tdh	Sama_0097	0.87	+1.7
110,688	-	tdh	Sama_0097	0.87	+2.6
110,688	-	tdh	Sama_0097	0.87	+1.7
110,688	-	tdh	Sama_0097	0.87	+0.2
110,688	-	tdh	Sama_0097	0.87	-0.8
110,688	-	tdh	Sama_0097	0.87	-0.2
110,688	-	tdh	Sama_0097	0.87	-2.0
110,688	-	tdh	Sama_0097	0.87	-0.7
110,688	-	tdh	Sama_0097	0.87	+2.2
110,726	+				-0.3
110,726	+				-0.2
110,727	-				-0.8
110,727	-				-0.5
110,742	-				-1.5
110,802	-				-0.3
110,823	-				-1.1
110,823	-				+1.2
110,823	-				-0.3
110,823	-				-0.2
110,859	-				+0.3
110,980	+		Sama_0098	0.12	-0.9
110,980	+		Sama_0098	0.12	-0.8
110,980	+		Sama_0098	0.12	-1.8
110,980	+		Sama_0098	0.12	+1.2
110,980	+		Sama_0098	0.12	+0.8
110,980	+		Sama_0098	0.12	-0.0
110,980	+		Sama_0098	0.12	-0.6
110,980	+		Sama_0098	0.12	+0.3
110,980	+		Sama_0098	0.12	-2.3
110,980	+		Sama_0098	0.12	+0.2
110,981	-		Sama_0098	0.12	-0.8
110,981	-		Sama_0098	0.12	-1.6
110,984	+		Sama_0098	0.12	-0.8
110,985	-		Sama_0098	0.12	-1.2
110,985	-		Sama_0098	0.12	+2.2
110,985	-		Sama_0098	0.12	-1.6
111,109	+		Sama_0098	0.23	-1.7
111,110	-		Sama_0098	0.23	-0.5
111,177	-		Sama_0098	0.28	-0.9
111,220	+		Sama_0098	0.32	-2.0
111,220	+		Sama_0098	0.32	-1.2
111,220	+		Sama_0098	0.32	-0.5
111,221	-		Sama_0098	0.32	-1.7
111,221	-		Sama_0098	0.32	-0.7
111,221	-		Sama_0098	0.32	+0.1
111,274	+		Sama_0098	0.37	-0.1
111,274	+		Sama_0098	0.37	-0.8
111,275	-		Sama_0098	0.37	+0.4
111,275	-		Sama_0098	0.37	-2.1
111,311	+		Sama_0098	0.40	-1.2
111,311	+		Sama_0098	0.40	+0.7
111,311	+		Sama_0098	0.40	+0.3
111,311	+		Sama_0098	0.40	-1.0
111,312	-		Sama_0098	0.40	-0.7
111,312	-		Sama_0098	0.40	-0.3
111,312	-		Sama_0098	0.40	-0.1
111,349	+		Sama_0098	0.43	-1.7
111,349	+		Sama_0098	0.43	-0.5
111,350	-		Sama_0098	0.43	-1.8
111,359	+		Sama_0098	0.44	+0.4
111,359	+		Sama_0098	0.44	-0.6
111,359	+		Sama_0098	0.44	+0.3
111,360	-		Sama_0098	0.44	-1.2
111,360	-		Sama_0098	0.44	-1.6
111,360	-		Sama_0098	0.44	-1.2
111,360	-		Sama_0098	0.44	-1.4
111,380	+		Sama_0098	0.45	-0.3
111,405	+		Sama_0098	0.47	-0.7
111,406	-		Sama_0098	0.48	-1.5
111,406	-		Sama_0098	0.48	-1.2
111,425	-		Sama_0098	0.49	+0.2
111,453	+		Sama_0098	0.52	-2.1
111,453	+		Sama_0098	0.52	-0.3
111,454	-		Sama_0098	0.52	-0.5
111,454	-		Sama_0098	0.52	-2.3
111,454	-		Sama_0098	0.52	-0.1
111,454	-		Sama_0098	0.52	-0.7
111,465	+		Sama_0098	0.53	-0.7
111,465	+		Sama_0098	0.53	+0.7
111,465	+		Sama_0098	0.53	+0.4
111,466	-		Sama_0098	0.53	-0.8
111,466	-		Sama_0098	0.53	-0.3
111,466	-		Sama_0098	0.53	+0.7
111,466	-		Sama_0098	0.53	+1.5
111,466	-		Sama_0098	0.53	-1.2
111,506	+		Sama_0098	0.56	-0.3
111,506	+		Sama_0098	0.56	+0.4
111,506	+		Sama_0098	0.56	+0.9
111,507	-		Sama_0098	0.56	+0.5
111,536	+		Sama_0098	0.58	-0.9
111,536	+		Sama_0098	0.58	+2.7
111,536	+		Sama_0098	0.58	-1.2
111,537	-		Sama_0098	0.59	-2.3
111,537	-		Sama_0098	0.59	-0.1
111,537	-		Sama_0098	0.59	-0.5
111,537	-		Sama_0098	0.59	-1.7
111,560	+		Sama_0098	0.60	-0.3
111,560	+		Sama_0098	0.60	+0.1
111,560	+		Sama_0098	0.60	-1.0
111,561	-		Sama_0098	0.61	+0.2
111,561	-		Sama_0098	0.61	-0.7
111,593	+		Sama_0098	0.63	-1.8
111,594	-		Sama_0098	0.63	-0.6
111,594	-		Sama_0098	0.63	-1.4
111,617	+		Sama_0098	0.65	-0.1
111,617	+		Sama_0098	0.65	+0.0
111,618	-		Sama_0098	0.65	-1.3
111,618	-		Sama_0098	0.65	+0.1
111,618	-		Sama_0098	0.65	-0.6
111,618	-		Sama_0098	0.65	+0.9
111,618	-		Sama_0098	0.65	-0.8
111,618	-		Sama_0098	0.65	-1.7
111,709	+		Sama_0098	0.73	-0.8
111,709	+		Sama_0098	0.73	-0.9
111,719	+		Sama_0098	0.74	+0.8
111,720	-		Sama_0098	0.74	-0.1
111,720	-		Sama_0098	0.74	-0.7
111,720	-		Sama_0098	0.74	-0.5
111,720	-		Sama_0098	0.74	-1.2
111,720	-		Sama_0098	0.74	-1.3
111,720	-		Sama_0098	0.74	-0.7
111,788	+		Sama_0098	0.80	-0.3
111,788	+		Sama_0098	0.80	+1.1
111,789	-		Sama_0098	0.80	+0.3
111,807	-		Sama_0098	0.81	-0.2
111,807	-		Sama_0098	0.81	-1.9
111,877	+		Sama_0098	0.87	-0.7
111,877	+		Sama_0098	0.87	+0.4
111,877	+		Sama_0098	0.87	-0.8
111,877	+		Sama_0098	0.87	-1.2
111,878	-		Sama_0098	0.87	-1.2
111,878	-		Sama_0098	0.87	-0.6
111,878	-		Sama_0098	0.87	-0.6
111,878	-		Sama_0098	0.87	-0.7
111,897	-		Sama_0098	0.89	-0.5
111,897	-		Sama_0098	0.89	-0.7
111,897	-		Sama_0098	0.89	-1.0
111,920	+				-1.0
111,920	+				+0.2
111,920	+				+1.4
111,920	+				-0.3
111,920	+				+0.2
111,920	+				+1.8
111,921	-				-1.6
111,981	-				+2.2
111,981	-				+0.2
112,012	+				-0.2
112,012	+				-1.2
112,012	+				+0.3
112,012	+				-1.5
112,013	-				-2.2
112,043	+				-2.1
112,043	+				-1.0
112,043	+				-0.2
112,044	-				+0.9
112,047	+				-0.2
112,047	+				-0.1
112,048	-				+0.2
112,048	-				-1.9
112,053	+				-0.9
112,054	-				-0.2
112,054	-				-1.7
112,054	-				-1.3
112,083	+				-1.1
112,083	+				-0.4
112,083	+				-1.9
112,083	+				-1.8
112,084	-				-2.3
112,084	-				+0.4
112,096	-				+0.9
112,096	-				-0.5
112,111	+				-0.1
112,112	-				+0.2
112,112	-				-0.8
112,112	-				-0.7
112,136	+				+1.3
112,147	-				-1.2
112,222	+				-0.8
112,222	+				+0.7
112,222	+				+0.1
112,223	-				-2.0
112,288	+				-0.9
112,288	+				-0.8
112,289	-				-0.9
112,289	-				-0.5
112,357	+		Sama_0099	0.11	+1.9
112,357	+		Sama_0099	0.11	-1.9
112,358	-		Sama_0099	0.11	+0.1
112,358	-		Sama_0099	0.11	-0.8
112,395	+		Sama_0099	0.17	+0.8
112,396	+		Sama_0099	0.17	-0.6
112,397	-		Sama_0099	0.17	-0.2
112,444	+		Sama_0099	0.24	+0.4
112,444	+		Sama_0099	0.24	-0.9
112,444	+		Sama_0099	0.24	-0.2
112,445	-		Sama_0099	0.24	-0.1
112,464	-		Sama_0099	0.27	-0.3
112,516	-		Sama_0099	0.36	+0.1
112,516	-		Sama_0099	0.36	-0.7
112,520	+		Sama_0099	0.36	+2.2
112,520	+		Sama_0099	0.36	-0.7
112,521	-		Sama_0099	0.36	-0.3
112,521	-		Sama_0099	0.36	-0.2
112,578	+		Sama_0099	0.45	+0.0
112,578	+		Sama_0099	0.45	+3.2
112,579	-		Sama_0099	0.45	-0.8
112,579	-		Sama_0099	0.45	+0.9
112,589	-		Sama_0099	0.47	+1.3
112,639	+		Sama_0099	0.55	+0.1
112,639	+		Sama_0099	0.55	+1.4
112,639	+		Sama_0099	0.55	+1.2
112,640	-		Sama_0099	0.55	+0.2
112,640	-		Sama_0099	0.55	-1.5
112,640	-		Sama_0099	0.55	+2.5
112,640	-		Sama_0099	0.55	-0.1
112,640	-		Sama_0099	0.55	-1.0
112,640	-		Sama_0099	0.55	-0.3
112,643	+		Sama_0099	0.56	+0.7
112,643	+		Sama_0099	0.56	-0.6
112,643	+		Sama_0099	0.56	+3.8
112,643	+		Sama_0099	0.56	-0.5
112,643	+		Sama_0099	0.56	-1.3
112,643	+		Sama_0099	0.56	+0.1
112,643	+		Sama_0099	0.56	+1.2
112,643	+		Sama_0099	0.56	+1.2
112,644	-		Sama_0099	0.56	+1.9
112,644	-		Sama_0099	0.56	+0.2
112,644	-		Sama_0099	0.56	+1.2
112,644	-		Sama_0099	0.56	+1.0
112,644	-		Sama_0099	0.56	+0.5
112,644	-		Sama_0099	0.56	+0.2
112,666	+		Sama_0099	0.59	+0.9
112,666	+		Sama_0099	0.59	+1.2
112,666	+		Sama_0099	0.59	+3.2
112,666	+		Sama_0099	0.59	+0.7
112,666	+		Sama_0099	0.59	-1.1
112,666	+		Sama_0099	0.59	+0.4
112,666	+		Sama_0099	0.59	+0.8
112,666	+		Sama_0099	0.59	-0.3
112,667	-		Sama_0099	0.59	-0.2
112,667	-		Sama_0099	0.59	+1.7
112,667	-		Sama_0099	0.59	-0.1
112,667	-		Sama_0099	0.59	+0.1
112,667	-		Sama_0099	0.59	+0.7
112,667	-		Sama_0099	0.59	-1.3
112,667	-		Sama_0099	0.59	-0.2
112,667	-		Sama_0099	0.59	+0.7
112,684	+		Sama_0099	0.62	+0.1
112,684	+		Sama_0099	0.62	+1.2
112,684	+		Sama_0099	0.62	-0.3
112,684	+		Sama_0099	0.62	-2.3
112,685	-		Sama_0099	0.62	-0.5
112,685	-		Sama_0099	0.62	-0.3
112,685	-		Sama_0099	0.62	-0.1
112,724	-		Sama_0099	0.68	+0.1
112,730	+		Sama_0099	0.69	+0.7
112,730	+		Sama_0099	0.69	-0.1
112,730	+		Sama_0099	0.69	+0.5
112,730	+		Sama_0099	0.69	+0.9
112,731	-		Sama_0099	0.69	+0.7
112,731	-		Sama_0099	0.69	-0.1
112,731	-		Sama_0099	0.69	+0.9
112,731	-		Sama_0099	0.69	+0.1
112,778	+		Sama_0099	0.77	-0.9
112,779	-		Sama_0099	0.77	+0.4
112,804	+		Sama_0099	0.81	-1.5
112,804	+		Sama_0099	0.81	+0.4
112,804	+		Sama_0099	0.81	+0.1
112,804	+		Sama_0099	0.81	+0.4
112,804	+		Sama_0099	0.81	+0.4
112,805	-		Sama_0099	0.81	+1.4
112,805	-		Sama_0099	0.81	+1.5
112,805	-		Sama_0099	0.81	-1.8
112,805	-		Sama_0099	0.81	+1.6
112,807	+		Sama_0099	0.81	-0.2
112,807	+		Sama_0099	0.81	+1.2
112,807	+		Sama_0099	0.81	+0.9
112,808	-		Sama_0099	0.81	-0.2
112,808	-		Sama_0099	0.81	+0.2
112,826	+		Sama_0099	0.84	+0.9
112,844	+		Sama_0099	0.87	+1.7
112,844	+		Sama_0099	0.87	+1.2
112,845	-		Sama_0099	0.87	-0.6
112,856	+		Sama_0099	0.89	-0.8
112,856	+		Sama_0099	0.89	+1.4
112,856	+		Sama_0099	0.89	-0.1
112,856	+		Sama_0099	0.89	-0.3
112,856	+		Sama_0099	0.89	-2.2
112,857	-		Sama_0099	0.89	-0.8
112,880	+				-1.8
112,930	-				-0.6
112,930	-				+0.8
112,930	-				+0.8
112,940	+				+0.7
112,940	+				-0.3
112,940	+				+0.9
112,940	+				+1.2
112,940	+				-0.9
112,940	+				+1.1
112,940	+				+0.7
112,940	+				+1.7
112,940	+				-0.1
112,940	+				+0.1
112,941	-				+0.4
112,964	+				-1.3
112,979	+				-1.2
112,979	+				+0.1
112,979	+				-0.8
112,979	+				+1.2
112,997	+				-0.9
112,997	+				-0.2
112,997	+				-0.2
112,997	+				+0.2
112,998	-				-0.5
112,998	-				-2.2
112,998	-				-0.5
113,002	+				-0.3
113,002	+				-1.0
113,002	+				+0.8