Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pbpG and Sama_0073 are separated by 88 nucleotides Sama_0073 and Sama_0074 are separated by 105 nucleotides
Sama_0072: pbpG - D-alanyl-D-alanine endopeptidase (RefSeq), at 77,895 to 78,806
pbpG
Sama_0073: Sama_0073 - 4-hydroxybenzoyl-CoA thioesterase (RefSeq), at 78,895 to 79,329
_0073
Sama_0074: Sama_0074 - HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (RefSeq), at 79,435 to 80,115
_0074
Position (kb) 78
79
80 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.907 kb on - strand at 77.907 kb on - strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.910 kb on - strand at 77.910 kb on - strand at 77.933 kb on + strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.935 kb on + strand at 77.936 kb on - strand at 77.936 kb on - strand at 77.936 kb on - strand at 78.123 kb on + strand, within pbpG at 78.169 kb on + strand, within pbpG at 78.170 kb on - strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.240 kb on + strand, within pbpG at 78.247 kb on + strand, within pbpG at 78.248 kb on - strand, within pbpG at 78.290 kb on + strand, within pbpG at 78.303 kb on + strand, within pbpG at 78.344 kb on + strand, within pbpG at 78.391 kb on + strand, within pbpG at 78.392 kb on - strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.618 kb on - strand, within pbpG at 78.638 kb on + strand, within pbpG at 78.638 kb on + strand, within pbpG at 78.646 kb on - strand, within pbpG at 78.646 kb on + strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.647 kb on - strand, within pbpG at 78.688 kb on + strand, within pbpG at 78.688 kb on + strand, within pbpG at 78.688 kb on + strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.689 kb on - strand, within pbpG at 78.784 kb on + strand at 78.784 kb on + strand at 78.785 kb on - strand at 78.785 kb on - strand at 78.822 kb on + strand at 78.822 kb on + strand at 78.823 kb on - strand at 78.823 kb on - strand at 78.856 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.867 kb on + strand at 78.868 kb on - strand at 78.868 kb on - strand at 79.033 kb on + strand, within Sama_0073 at 79.040 kb on + strand, within Sama_0073 at 79.041 kb on - strand, within Sama_0073 at 79.041 kb on - strand, within Sama_0073 at 79.050 kb on + strand, within Sama_0073 at 79.050 kb on + strand, within Sama_0073 at 79.051 kb on - strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.066 kb on + strand, within Sama_0073 at 79.067 kb on - strand, within Sama_0073 at 79.067 kb on - strand, within Sama_0073 at 79.067 kb on - strand, within Sama_0073 at 79.067 kb on - strand, within Sama_0073 at 79.067 kb on - strand, within Sama_0073 at 79.069 kb on - strand, within Sama_0073 at 79.069 kb on - strand, within Sama_0073 at 79.106 kb on + strand, within Sama_0073 at 79.107 kb on - strand, within Sama_0073 at 79.124 kb on + strand, within Sama_0073 at 79.124 kb on + strand, within Sama_0073 at 79.124 kb on + strand, within Sama_0073 at 79.124 kb on + strand, within Sama_0073 at 79.124 kb on + strand, within Sama_0073 at 79.124 kb on + strand, within Sama_0073 at 79.125 kb on - strand, within Sama_0073 at 79.125 kb on - strand, within Sama_0073 at 79.125 kb on - strand, within Sama_0073 at 79.125 kb on - strand, within Sama_0073 at 79.168 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.169 kb on + strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.170 kb on - strand, within Sama_0073 at 79.235 kb on + strand, within Sama_0073 at 79.236 kb on - strand, within Sama_0073 at 79.236 kb on - strand, within Sama_0073 at 79.236 kb on - strand, within Sama_0073 at 79.240 kb on + strand, within Sama_0073 at 79.240 kb on + strand, within Sama_0073 at 79.241 kb on - strand, within Sama_0073 at 79.246 kb on - strand, within Sama_0073 at 79.246 kb on - strand, within Sama_0073 at 79.246 kb on - strand, within Sama_0073 at 79.363 kb on - strand at 79.363 kb on - strand at 79.436 kb on + strand at 79.437 kb on - strand at 79.437 kb on - strand at 79.437 kb on - strand at 79.476 kb on - strand at 79.606 kb on - strand, within Sama_0074 at 79.619 kb on + strand, within Sama_0074 at 79.620 kb on - strand, within Sama_0074 at 79.620 kb on - strand, within Sama_0074 at 79.620 kb on - strand, within Sama_0074 at 79.748 kb on + strand, within Sama_0074 at 79.749 kb on - strand, within Sama_0074 at 79.772 kb on + strand, within Sama_0074 at 79.772 kb on + strand, within Sama_0074 at 79.772 kb on + strand, within Sama_0074 at 79.773 kb on - strand, within Sama_0074 at 79.780 kb on + strand, within Sama_0074 at 79.781 kb on - strand, within Sama_0074 at 79.781 kb on - strand, within Sama_0074 at 79.791 kb on + strand, within Sama_0074 at 79.802 kb on + strand, within Sama_0074 at 79.802 kb on + strand, within Sama_0074 at 79.803 kb on - strand, within Sama_0074 at 79.803 kb on - strand, within Sama_0074 at 79.803 kb on - strand, within Sama_0074 at 79.803 kb on - strand, within Sama_0074 at 79.803 kb on - strand, within Sama_0074 at 79.832 kb on + strand, within Sama_0074 at 79.833 kb on - strand, within Sama_0074 at 79.881 kb on + strand, within Sama_0074 at 79.881 kb on + strand, within Sama_0074 at 79.953 kb on + strand, within Sama_0074 at 79.976 kb on + strand, within Sama_0074 at 79.977 kb on - strand, within Sama_0074 at 80.037 kb on - strand, within Sama_0074 at 80.058 kb on + strand at 80.058 kb on + strand at 80.093 kb on - strand at 80.098 kb on + strand at 80.099 kb on - strand at 80.099 kb on - strand at 80.119 kb on - strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.124 kb on + strand at 80.125 kb on - strand at 80.125 kb on - strand at 80.125 kb on - strand at 80.125 kb on - strand at 80.125 kb on - strand at 80.132 kb on + strand at 80.175 kb on - strand at 80.175 kb on - strand at 80.280 kb on + strand at 80.280 kb on + strand at 80.281 kb on - strand at 80.281 kb on - strand at 80.281 kb on - strand at 80.285 kb on + strand at 80.286 kb on - strand at 80.286 kb on - strand at 80.320 kb on + strand at 80.320 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 77,896 + +0.1 77,896 + -1.0 77,896 + -0.4 77,896 + -0.1 77,896 + +0.4 77,896 + -0.3 77,897 - -1.7 77,897 - +0.4 77,897 - -0.6 77,897 - -1.6 77,906 + -0.6 77,906 + +0.7 77,906 + +0.2 77,906 + -0.3 77,906 + -0.8 77,907 - -0.8 77,907 - +0.8 77,909 + +0.3 77,909 + -1.8 77,909 + -1.0 77,909 + +1.7 77,910 - -1.5 77,910 - +1.4 77,933 + -1.3 77,934 - -0.1 77,934 - +0.1 77,934 - -0.7 77,934 - +0.4 77,934 - -2.0 77,934 - -0.8 77,935 + +1.1 77,936 - +2.2 77,936 - +0.3 77,936 - -2.1 78,123 + pbpG Sama_0072 0.25 -0.3 78,169 + pbpG Sama_0072 0.30 +0.1 78,170 - pbpG Sama_0072 0.30 -0.6 78,184 + pbpG Sama_0072 0.32 -2.0 78,184 + pbpG Sama_0072 0.32 +0.1 78,184 + pbpG Sama_0072 0.32 -2.0 78,184 + pbpG Sama_0072 0.32 -0.5 78,185 - pbpG Sama_0072 0.32 -0.4 78,185 - pbpG Sama_0072 0.32 -0.4 78,212 + pbpG Sama_0072 0.35 -0.5 78,212 + pbpG Sama_0072 0.35 -0.8 78,212 + pbpG Sama_0072 0.35 -0.5 78,213 - pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 -0.6 78,213 - pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 -0.5 78,213 - pbpG Sama_0072 0.35 +0.7 78,213 - pbpG Sama_0072 0.35 -1.4 78,213 - pbpG Sama_0072 0.35 -0.8 78,213 - pbpG Sama_0072 0.35 -1.1 78,213 - pbpG Sama_0072 0.35 -1.7 78,240 + pbpG Sama_0072 0.38 +0.7 78,247 + pbpG Sama_0072 0.39 -0.6 78,248 - pbpG Sama_0072 0.39 -2.7 78,290 + pbpG Sama_0072 0.43 +0.9 78,303 + pbpG Sama_0072 0.45 -0.3 78,344 + pbpG Sama_0072 0.49 +2.9 78,391 + pbpG Sama_0072 0.54 +0.7 78,392 - pbpG Sama_0072 0.54 -2.4 78,617 + pbpG Sama_0072 0.79 +1.7 78,617 + pbpG Sama_0072 0.79 -0.7 78,617 + pbpG Sama_0072 0.79 +1.4 78,618 - pbpG Sama_0072 0.79 +0.1 78,638 + pbpG Sama_0072 0.81 -0.7 78,638 + pbpG Sama_0072 0.81 -1.6 78,646 - pbpG Sama_0072 0.82 -0.1 78,646 + pbpG Sama_0072 0.82 +0.9 78,647 - pbpG Sama_0072 0.82 -2.5 78,647 - pbpG Sama_0072 0.82 -0.8 78,647 - pbpG Sama_0072 0.82 +0.2 78,647 - pbpG Sama_0072 0.82 -0.7 78,688 + pbpG Sama_0072 0.87 +0.9 78,688 + pbpG Sama_0072 0.87 -0.1 78,688 + pbpG Sama_0072 0.87 +0.1 78,689 - pbpG Sama_0072 0.87 -0.4 78,689 - pbpG Sama_0072 0.87 +0.4 78,689 - pbpG Sama_0072 0.87 -2.1 78,689 - pbpG Sama_0072 0.87 +0.3 78,689 - pbpG Sama_0072 0.87 +0.4 78,784 + -2.4 78,784 + -0.5 78,785 - -0.9 78,785 - +0.2 78,822 + -0.3 78,822 + -0.1 78,823 - +1.6 78,823 - -0.2 78,856 + +0.7 78,867 + -0.6 78,867 + -1.9 78,867 + +0.1 78,867 + +0.0 78,867 + +2.8 78,868 - -0.6 78,868 - -0.9 79,033 + Sama_0073 0.32 -1.0 79,040 + Sama_0073 0.33 +1.1 79,041 - Sama_0073 0.34 -0.3 79,041 - Sama_0073 0.34 +0.1 79,050 + Sama_0073 0.36 +2.2 79,050 + Sama_0073 0.36 -0.7 79,051 - Sama_0073 0.36 -2.4 79,066 + Sama_0073 0.39 -1.2 79,066 + Sama_0073 0.39 -1.7 79,066 + Sama_0073 0.39 -1.6 79,066 + Sama_0073 0.39 +1.4 79,066 + Sama_0073 0.39 -1.3 79,066 + Sama_0073 0.39 +0.7 79,066 + Sama_0073 0.39 -0.1 79,066 + Sama_0073 0.39 -0.1 79,066 + Sama_0073 0.39 +1.2 79,066 + Sama_0073 0.39 -0.6 79,066 + Sama_0073 0.39 -0.9 79,067 - Sama_0073 0.40 +0.2 79,067 - Sama_0073 0.40 +0.9 79,067 - Sama_0073 0.40 -1.5 79,067 - Sama_0073 0.40 +0.8 79,067 - Sama_0073 0.40 -0.0 79,069 - Sama_0073 0.40 +0.4 79,069 - Sama_0073 0.40 -1.4 79,106 + Sama_0073 0.49 -0.8 79,107 - Sama_0073 0.49 +0.7 79,124 + Sama_0073 0.53 -0.5 79,124 + Sama_0073 0.53 -0.7 79,124 + Sama_0073 0.53 +1.2 79,124 + Sama_0073 0.53 +0.1 79,124 + Sama_0073 0.53 -0.8 79,124 + Sama_0073 0.53 +0.2 79,125 - Sama_0073 0.53 -1.0 79,125 - Sama_0073 0.53 +0.4 79,125 - Sama_0073 0.53 -0.3 79,125 - Sama_0073 0.53 -1.0 79,168 + Sama_0073 0.63 +1.8 79,169 + Sama_0073 0.63 -0.6 79,169 + Sama_0073 0.63 -1.3 79,169 + Sama_0073 0.63 +1.7 79,169 + Sama_0073 0.63 -1.1 79,169 + Sama_0073 0.63 -0.3 79,169 + Sama_0073 0.63 -0.6 79,169 + Sama_0073 0.63 -0.1 79,169 + Sama_0073 0.63 +0.2 79,169 + Sama_0073 0.63 -1.1 79,169 + Sama_0073 0.63 -2.5 79,169 + Sama_0073 0.63 -0.6 79,170 - Sama_0073 0.63 +1.2 79,170 - Sama_0073 0.63 +0.3 79,170 - Sama_0073 0.63 -0.5 79,170 - Sama_0073 0.63 -0.6 79,170 - Sama_0073 0.63 -1.5 79,170 - Sama_0073 0.63 -0.1 79,170 - Sama_0073 0.63 -0.2 79,235 + Sama_0073 0.78 +1.4 79,236 - Sama_0073 0.78 -1.2 79,236 - Sama_0073 0.78 +0.4 79,236 - Sama_0073 0.78 +2.2 79,240 + Sama_0073 0.79 -0.9 79,240 + Sama_0073 0.79 -1.4 79,241 - Sama_0073 0.80 -0.3 79,246 - Sama_0073 0.81 -0.8 79,246 - Sama_0073 0.81 -2.3 79,246 - Sama_0073 0.81 -1.1 79,363 - +0.7 79,363 - -1.1 79,436 + -1.4 79,437 - -1.0 79,437 - -0.9 79,437 - -0.7 79,476 - -0.5 79,606 - Sama_0074 0.25 +0.2 79,619 + Sama_0074 0.27 -0.9 79,620 - Sama_0074 0.27 -1.1 79,620 - Sama_0074 0.27 -1.9 79,620 - Sama_0074 0.27 -0.2 79,748 + Sama_0074 0.46 +0.9 79,749 - Sama_0074 0.46 +1.4 79,772 + Sama_0074 0.49 -0.1 79,772 + Sama_0074 0.49 -0.1 79,772 + Sama_0074 0.49 +0.7 79,773 - Sama_0074 0.50 +1.7 79,780 + Sama_0074 0.51 -0.0 79,781 - Sama_0074 0.51 -0.5 79,781 - Sama_0074 0.51 +0.8 79,791 + Sama_0074 0.52 -0.5 79,802 + Sama_0074 0.54 -1.6 79,802 + Sama_0074 0.54 +0.1 79,803 - Sama_0074 0.54 +1.2 79,803 - Sama_0074 0.54 +0.7 79,803 - Sama_0074 0.54 -0.2 79,803 - Sama_0074 0.54 -1.4 79,803 - Sama_0074 0.54 -1.0 79,832 + Sama_0074 0.58 +0.2 79,833 - Sama_0074 0.58 -0.2 79,881 + Sama_0074 0.65 +0.7 79,881 + Sama_0074 0.65 -0.3 79,953 + Sama_0074 0.76 -1.9 79,976 + Sama_0074 0.79 -1.4 79,977 - Sama_0074 0.80 -0.0 80,037 - Sama_0074 0.88 -0.2 80,058 + +3.2 80,058 + +0.3 80,093 - -1.0 80,098 + -1.6 80,099 - +0.9 80,099 - +0.4 80,119 - -0.3 80,124 + -2.3 80,124 + -1.7 80,124 + -0.2 80,124 + -0.9 80,124 + -1.0 80,124 + +0.9 80,124 + -0.2 80,124 + -0.1 80,125 - -1.0 80,125 - -1.6 80,125 - -2.3 80,125 - -3.0 80,125 - +1.9 80,132 + +1.2 80,175 - +0.1 80,175 - +0.4 80,280 + -0.8 80,280 + -1.8 80,281 - -0.8 80,281 - -1.3 80,281 - -1.3 80,285 + -0.5 80,286 - -0.9 80,286 - -0.6 80,320 + -0.6 80,320 + -0.2
Or see this region's nucleotide sequence