Experiment: Fusidic 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mogA and Sama_0069 are separated by 46 nucleotides Sama_0069 and Sama_0070 are separated by 43 nucleotides Sama_0070 and Sama_0071 are separated by 23 nucleotides Sama_0071 and pbpG are separated by 1 nucleotides
Sama_0068: mogA - molybdenum cofactor biosynthesis protein (RefSeq), at 75,976 to 76,506
mogA
Sama_0069: Sama_0069 - NLP/P60 family lipoprotein (RefSeq), at 76,553 to 76,999
_0069
Sama_0070: Sama_0070 - hypothetical protein (RefSeq), at 77,043 to 77,630
_0070
Sama_0071: Sama_0071 - hypothetical protein (RefSeq), at 77,654 to 77,893
_0071
Sama_0072: pbpG - D-alanyl-D-alanine endopeptidase (RefSeq), at 77,895 to 78,806
pbpG
Position (kb) 77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 76.059 kb on + strand, within mogA at 76.059 kb on + strand, within mogA at 76.060 kb on - strand, within mogA at 76.060 kb on - strand, within mogA at 76.060 kb on - strand, within mogA at 76.078 kb on + strand, within mogA at 76.078 kb on + strand, within mogA at 76.105 kb on + strand, within mogA at 76.105 kb on + strand, within mogA at 76.105 kb on + strand, within mogA at 76.106 kb on - strand, within mogA at 76.106 kb on - strand, within mogA at 76.106 kb on - strand, within mogA at 76.136 kb on + strand, within mogA at 76.136 kb on + strand, within mogA at 76.136 kb on + strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.137 kb on - strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.317 kb on + strand, within mogA at 76.318 kb on - strand, within mogA at 76.318 kb on - strand, within mogA at 76.361 kb on + strand, within mogA at 76.362 kb on - strand, within mogA at 76.429 kb on + strand, within mogA at 76.429 kb on + strand, within mogA at 76.430 kb on - strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.434 kb on + strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.435 kb on - strand, within mogA at 76.479 kb on + strand at 76.479 kb on + strand at 76.479 kb on + strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.480 kb on - strand at 76.623 kb on + strand, within Sama_0069 at 76.623 kb on + strand, within Sama_0069 at 76.623 kb on + strand, within Sama_0069 at 76.624 kb on - strand, within Sama_0069 at 76.661 kb on + strand, within Sama_0069 at 76.661 kb on + strand, within Sama_0069 at 76.662 kb on - strand, within Sama_0069 at 76.662 kb on - strand, within Sama_0069 at 76.685 kb on + strand, within Sama_0069 at 76.686 kb on - strand, within Sama_0069 at 76.686 kb on - strand, within Sama_0069 at 76.705 kb on + strand, within Sama_0069 at 76.706 kb on - strand, within Sama_0069 at 76.706 kb on - strand, within Sama_0069 at 76.746 kb on - strand, within Sama_0069 at 76.813 kb on - strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.827 kb on + strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.828 kb on - strand, within Sama_0069 at 76.958 kb on + strand at 76.959 kb on - strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.983 kb on + strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.984 kb on - strand at 76.991 kb on + strand at 76.992 kb on - strand at 76.992 kb on - strand at 76.992 kb on - strand at 77.041 kb on + strand at 77.042 kb on - strand at 77.042 kb on - strand at 77.106 kb on + strand, within Sama_0070 at 77.120 kb on + strand, within Sama_0070 at 77.121 kb on - strand, within Sama_0070 at 77.168 kb on + strand, within Sama_0070 at 77.200 kb on + strand, within Sama_0070 at 77.200 kb on + strand, within Sama_0070 at 77.201 kb on - strand, within Sama_0070 at 77.201 kb on - strand, within Sama_0070 at 77.300 kb on + strand, within Sama_0070 at 77.372 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.436 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.442 kb on + strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.443 kb on - strand, within Sama_0070 at 77.456 kb on - strand, within Sama_0070 at 77.456 kb on - strand, within Sama_0070 at 77.505 kb on + strand, within Sama_0070 at 77.506 kb on - strand, within Sama_0070 at 77.506 kb on - strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.555 kb on + strand, within Sama_0070 at 77.556 kb on - strand, within Sama_0070 at 77.556 kb on - strand, within Sama_0070 at 77.622 kb on + strand at 77.622 kb on + strand at 77.622 kb on + strand at 77.622 kb on + strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.623 kb on - strand at 77.655 kb on + strand at 77.655 kb on + strand at 77.656 kb on - strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.673 kb on + strand at 77.674 kb on - strand at 77.674 kb on - strand at 77.674 kb on - strand at 77.797 kb on + strand, within Sama_0071 at 77.797 kb on + strand, within Sama_0071 at 77.797 kb on + strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.798 kb on - strand, within Sama_0071 at 77.817 kb on + strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.818 kb on - strand, within Sama_0071 at 77.852 kb on + strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.853 kb on - strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.858 kb on + strand, within Sama_0071 at 77.872 kb on + strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.873 kb on - strand at 77.890 kb on - strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.896 kb on + strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.897 kb on - strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.906 kb on + strand at 77.907 kb on - strand at 77.907 kb on - strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.909 kb on + strand at 77.910 kb on - strand at 77.910 kb on - strand at 77.933 kb on + strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.934 kb on - strand at 77.935 kb on + strand at 77.936 kb on - strand at 77.936 kb on - strand at 77.936 kb on - strand at 78.123 kb on + strand, within pbpG at 78.169 kb on + strand, within pbpG at 78.170 kb on - strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.184 kb on + strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.185 kb on - strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.212 kb on + strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.213 kb on - strand, within pbpG at 78.240 kb on + strand, within pbpG at 78.247 kb on + strand, within pbpG at 78.248 kb on - strand, within pbpG at 78.290 kb on + strand, within pbpG at 78.303 kb on + strand, within pbpG at 78.344 kb on + strand, within pbpG at 78.391 kb on + strand, within pbpG at 78.392 kb on - strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.617 kb on + strand, within pbpG at 78.618 kb on - strand, within pbpG
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.0625 mg/ml remove 76,059 + mogA Sama_0068 0.16 +0.1 76,059 + mogA Sama_0068 0.16 -0.5 76,060 - mogA Sama_0068 0.16 +0.4 76,060 - mogA Sama_0068 0.16 -1.0 76,060 - mogA Sama_0068 0.16 +0.1 76,078 + mogA Sama_0068 0.19 +0.4 76,078 + mogA Sama_0068 0.19 +3.6 76,105 + mogA Sama_0068 0.24 -0.5 76,105 + mogA Sama_0068 0.24 -0.5 76,105 + mogA Sama_0068 0.24 +0.2 76,106 - mogA Sama_0068 0.24 -0.1 76,106 - mogA Sama_0068 0.24 -0.1 76,106 - mogA Sama_0068 0.24 +0.2 76,136 + mogA Sama_0068 0.30 +0.8 76,136 + mogA Sama_0068 0.30 +0.6 76,136 + mogA Sama_0068 0.30 -1.6 76,137 - mogA Sama_0068 0.30 +0.4 76,137 - mogA Sama_0068 0.30 -0.6 76,137 - mogA Sama_0068 0.30 +0.4 76,137 - mogA Sama_0068 0.30 +0.7 76,137 - mogA Sama_0068 0.30 -0.6 76,137 - mogA Sama_0068 0.30 +0.9 76,317 + mogA Sama_0068 0.64 +1.5 76,317 + mogA Sama_0068 0.64 +0.9 76,317 + mogA Sama_0068 0.64 -2.8 76,317 + mogA Sama_0068 0.64 +1.0 76,317 + mogA Sama_0068 0.64 -0.4 76,318 - mogA Sama_0068 0.64 -0.0 76,318 - mogA Sama_0068 0.64 -2.2 76,361 + mogA Sama_0068 0.73 -0.9 76,362 - mogA Sama_0068 0.73 +0.7 76,429 + mogA Sama_0068 0.85 -0.9 76,429 + mogA Sama_0068 0.85 -0.6 76,430 - mogA Sama_0068 0.85 -0.1 76,434 + mogA Sama_0068 0.86 +0.2 76,434 + mogA Sama_0068 0.86 +2.0 76,434 + mogA Sama_0068 0.86 -0.8 76,434 + mogA Sama_0068 0.86 +0.4 76,434 + mogA Sama_0068 0.86 -2.0 76,435 - mogA Sama_0068 0.86 -0.9 76,435 - mogA Sama_0068 0.86 -0.9 76,435 - mogA Sama_0068 0.86 +1.7 76,435 - mogA Sama_0068 0.86 +0.2 76,435 - mogA Sama_0068 0.86 +1.9 76,479 + +0.9 76,479 + -0.3 76,479 + -1.3 76,480 - +2.7 76,480 - +0.1 76,480 - +0.2 76,623 + Sama_0069 0.16 -0.4 76,623 + Sama_0069 0.16 -0.5 76,623 + Sama_0069 0.16 -2.6 76,624 - Sama_0069 0.16 -0.2 76,661 + Sama_0069 0.24 +0.9 76,661 + Sama_0069 0.24 -1.3 76,662 - Sama_0069 0.24 -0.5 76,662 - Sama_0069 0.24 -1.2 76,685 + Sama_0069 0.30 +2.2 76,686 - Sama_0069 0.30 -0.1 76,686 - Sama_0069 0.30 -1.0 76,705 + Sama_0069 0.34 +0.9 76,706 - Sama_0069 0.34 -0.6 76,706 - Sama_0069 0.34 -0.5 76,746 - Sama_0069 0.43 +1.2 76,813 - Sama_0069 0.58 +2.4 76,827 + Sama_0069 0.61 +0.4 76,827 + Sama_0069 0.61 -1.0 76,827 + Sama_0069 0.61 +1.4 76,827 + Sama_0069 0.61 +2.8 76,827 + Sama_0069 0.61 -1.8 76,827 + Sama_0069 0.61 -0.1 76,827 + Sama_0069 0.61 -0.1 76,827 + Sama_0069 0.61 +1.2 76,828 - Sama_0069 0.62 -1.2 76,828 - Sama_0069 0.62 -0.1 76,828 - Sama_0069 0.62 -0.5 76,828 - Sama_0069 0.62 -1.7 76,828 - Sama_0069 0.62 -1.0 76,958 + -0.7 76,959 - -0.5 76,983 + +1.3 76,983 + -1.2 76,983 + -1.5 76,983 + +0.2 76,983 + -0.2 76,983 + +0.7 76,984 - -0.1 76,984 - +0.8 76,984 - +0.3 76,991 + +0.1 76,992 - -2.0 76,992 - +0.4 76,992 - +0.1 77,041 + +0.1 77,042 - +1.1 77,042 - +0.1 77,106 + Sama_0070 0.11 +1.0 77,120 + Sama_0070 0.13 +1.1 77,121 - Sama_0070 0.13 +0.7 77,168 + Sama_0070 0.21 +1.8 77,200 + Sama_0070 0.27 +3.8 77,200 + Sama_0070 0.27 +0.8 77,201 - Sama_0070 0.27 +0.4 77,201 - Sama_0070 0.27 +1.2 77,300 + Sama_0070 0.44 +0.2 77,372 + Sama_0070 0.56 +0.7 77,436 + Sama_0070 0.67 -0.7 77,436 + Sama_0070 0.67 -0.7 77,436 + Sama_0070 0.67 -0.1 77,436 + Sama_0070 0.67 -0.8 77,436 + Sama_0070 0.67 -0.5 77,436 + Sama_0070 0.67 -0.3 77,442 + Sama_0070 0.68 -2.0 77,442 + Sama_0070 0.68 -0.2 77,442 + Sama_0070 0.68 -0.7 77,442 + Sama_0070 0.68 +1.1 77,442 + Sama_0070 0.68 +0.8 77,442 + Sama_0070 0.68 -0.5 77,442 + Sama_0070 0.68 +0.4 77,442 + Sama_0070 0.68 +0.4 77,443 - Sama_0070 0.68 -0.7 77,443 - Sama_0070 0.68 +1.6 77,443 - Sama_0070 0.68 -0.7 77,443 - Sama_0070 0.68 -1.1 77,443 - Sama_0070 0.68 +1.2 77,443 - Sama_0070 0.68 -2.8 77,443 - Sama_0070 0.68 -1.7 77,443 - Sama_0070 0.68 -0.3 77,456 - Sama_0070 0.70 +0.5 77,456 - Sama_0070 0.70 -1.0 77,505 + Sama_0070 0.79 +0.5 77,506 - Sama_0070 0.79 -0.7 77,506 - Sama_0070 0.79 +2.2 77,555 + Sama_0070 0.87 +0.5 77,555 + Sama_0070 0.87 -0.6 77,555 + Sama_0070 0.87 -2.6 77,556 - Sama_0070 0.87 +1.1 77,556 - Sama_0070 0.87 -1.0 77,622 + -0.5 77,622 + -0.3 77,622 + -0.2 77,622 + +0.5 77,623 - -1.2 77,623 - -1.2 77,623 - -0.4 77,623 - +1.0 77,623 - +0.9 77,623 - -1.3 77,655 + +0.5 77,655 + +0.3 77,656 - -0.7 77,673 + +1.3 77,673 + -0.9 77,673 + +0.2 77,673 + -0.7 77,673 + -0.3 77,674 - -0.8 77,674 - +1.4 77,674 - -0.2 77,797 + Sama_0071 0.60 +0.1 77,797 + Sama_0071 0.60 -2.5 77,797 + Sama_0071 0.60 -0.6 77,798 - Sama_0071 0.60 -0.1 77,798 - Sama_0071 0.60 -0.6 77,798 - Sama_0071 0.60 -1.8 77,817 + Sama_0071 0.68 +0.2 77,818 - Sama_0071 0.68 -0.3 77,818 - Sama_0071 0.68 +1.7 77,818 - Sama_0071 0.68 +0.3 77,852 + Sama_0071 0.82 +0.4 77,853 - Sama_0071 0.83 -1.2 77,853 - Sama_0071 0.83 +0.1 77,853 - Sama_0071 0.83 -2.2 77,858 + Sama_0071 0.85 -0.3 77,858 + Sama_0071 0.85 -0.5 77,858 + Sama_0071 0.85 +0.5 77,872 + +0.1 77,873 - +0.1 77,873 - +0.3 77,873 - -0.2 77,890 - -0.1 77,896 + +0.1 77,896 + -1.0 77,896 + -0.4 77,896 + -0.1 77,896 + +0.4 77,896 + -0.3 77,897 - -1.7 77,897 - +0.4 77,897 - -0.6 77,897 - -1.6 77,906 + -0.6 77,906 + +0.7 77,906 + +0.2 77,906 + -0.3 77,906 + -0.8 77,907 - -0.8 77,907 - +0.8 77,909 + +0.3 77,909 + -1.8 77,909 + -1.0 77,909 + +1.7 77,910 - -1.5 77,910 - +1.4 77,933 + -1.3 77,934 - -0.1 77,934 - +0.1 77,934 - -0.7 77,934 - +0.4 77,934 - -2.0 77,934 - -0.8 77,935 + +1.1 77,936 - +2.2 77,936 - +0.3 77,936 - -2.1 78,123 + pbpG Sama_0072 0.25 -0.3 78,169 + pbpG Sama_0072 0.30 +0.1 78,170 - pbpG Sama_0072 0.30 -0.6 78,184 + pbpG Sama_0072 0.32 -2.0 78,184 + pbpG Sama_0072 0.32 +0.1 78,184 + pbpG Sama_0072 0.32 -2.0 78,184 + pbpG Sama_0072 0.32 -0.5 78,185 - pbpG Sama_0072 0.32 -0.4 78,185 - pbpG Sama_0072 0.32 -0.4 78,212 + pbpG Sama_0072 0.35 -0.5 78,212 + pbpG Sama_0072 0.35 -0.8 78,212 + pbpG Sama_0072 0.35 -0.5 78,213 - pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 -0.6 78,213 - pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 +0.2 78,213 - pbpG Sama_0072 0.35 -0.5 78,213 - pbpG Sama_0072 0.35 +0.7 78,213 - pbpG Sama_0072 0.35 -1.4 78,213 - pbpG Sama_0072 0.35 -0.8 78,213 - pbpG Sama_0072 0.35 -1.1 78,213 - pbpG Sama_0072 0.35 -1.7 78,240 + pbpG Sama_0072 0.38 +0.7 78,247 + pbpG Sama_0072 0.39 -0.6 78,248 - pbpG Sama_0072 0.39 -2.7 78,290 + pbpG Sama_0072 0.43 +0.9 78,303 + pbpG Sama_0072 0.45 -0.3 78,344 + pbpG Sama_0072 0.49 +2.9 78,391 + pbpG Sama_0072 0.54 +0.7 78,392 - pbpG Sama_0072 0.54 -2.4 78,617 + pbpG Sama_0072 0.79 +1.7 78,617 + pbpG Sama_0072 0.79 -0.7 78,617 + pbpG Sama_0072 0.79 +1.4 78,618 - pbpG Sama_0072 0.79 +0.1
Or see this region's nucleotide sequence