Strain Fitness in Shewanella oneidensis MR-1 around SO3949

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurA and SO3949 are separated by 12 nucleotidesSO3949 and SO3950 are separated by 16 nucleotidesSO3950 and SO3951 are separated by 5 nucleotidesSO3951 and SO3952 are separated by 11 nucleotides SO3948: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (NCBI ptt file), at 4,093,440 to 4,094,699 murA SO3949: SO3949 - BolA/YrbA family protein (NCBI ptt file), at 4,094,712 to 4,094,963 SO3949 SO3950: SO3950 - SpoIIAA family protein (NCBI ptt file), at 4,094,980 to 4,095,264 SO3950 SO3951: SO3951 - conserved hypothetical protein (NCBI ptt file), at 4,095,270 to 4,095,923 SO3951 SO3952: SO3952 - mce-related protein (NCBI ptt file), at 4,095,935 to 4,096,408 SO3952 Position (kb) 4094 4095Strain fitness (log2 ratio) -1 0 1at 4094.810 kb on - strand, within SO3949at 4094.909 kb on - strand, within SO3949at 4095.244 kb on - strandat 4095.244 kb on - strandat 4095.274 kb on - strandat 4095.388 kb on - strand, within SO3951at 4095.664 kb on - strand, within SO3951at 4095.677 kb on - strand, within SO3951

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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4,094,810 - SO3949 0.39 -1.5
4,094,909 - SO3949 0.78 -1.1
4,095,244 - +0.3
4,095,244 - +1.7
4,095,274 - +1.0
4,095,388 - SO3951 0.18 +0.7
4,095,664 - SO3951 0.60 +0.8
4,095,677 - SO3951 0.62 +0.4

Or see this region's nucleotide sequence