Strain Fitness in Shewanella oneidensis MR-1 around SO2553

Experiment: Uridine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine (C)
2,684,066	+		SO2551	0.89	+0.4
2,684,114	-				+0.4
2,684,178	-				-0.3
2,684,178	-				-0.6
2,684,182	-				+0.3
2,684,182	-				-1.3
2,684,182	-				+0.6
2,684,182	-				+0.4
2,684,182	-				+0.3
2,684,184	+				+0.8
2,684,184	+				+0.3
2,684,184	+				+1.4
2,684,184	+				-0.2
2,684,184	+				+0.4
2,684,184	+				+0.6
2,684,184	+				+0.5
2,684,184	+				-0.9
2,684,184	+				+1.2
2,684,184	+				+0.6
2,684,184	+				-0.3
2,684,184	+				+0.3
2,684,184	+				-1.2
2,684,184	+				+0.6
2,684,184	+				+1.0
2,684,184	+				+0.2
2,684,184	+				+0.5
2,684,192	-				+0.1
2,684,192	-				-0.3
2,684,192	-				+0.0
2,684,192	-				+0.5
2,684,192	-				+0.2
2,684,192	-				-0.5
2,684,192	-				-0.3
2,684,192	-				-0.1
2,684,192	-				+0.1
2,684,192	-				-0.0
2,684,192	-				+0.2
2,684,192	-				+0.0
2,684,192	-				-0.7
2,684,199	-				-0.3
2,684,199	-				+0.1
2,684,200	-				-1.0
2,684,215	-				+0.7
2,684,225	+				-0.0
2,684,225	+				+0.2
2,684,239	+				+2.9
2,684,241	+				-0.5
2,684,241	+				+0.6
2,684,241	+				+0.4
2,684,241	+				+0.7
2,684,241	+				-1.3
2,684,241	+				+0.7
2,684,241	+				+0.7
2,684,241	+				+0.3
2,684,241	+				-0.5
2,684,241	+				+0.1
2,684,244	-				-0.2
2,684,247	+				+0.3
2,684,249	-				-0.0
2,684,249	-				+0.3
2,684,249	-				-0.1
2,684,249	-				-0.5
2,684,249	-				+1.1
2,684,249	-				-0.6
2,684,249	-				-0.2
2,684,249	-				+0.4
2,684,249	-				+0.6
2,684,251	+				+0.1
2,684,251	+				-1.0
2,684,251	+				-0.6
2,684,251	+				+1.6
2,684,251	+				+0.5
2,684,251	+				+0.2
2,684,259	-				+0.1
2,684,259	-				-0.1
2,684,259	-				-0.7
2,684,259	-				+0.1
2,684,259	-				+0.6
2,684,259	-				-1.1
2,684,259	-				+0.0
2,684,259	-				-0.5
2,684,259	-				+0.7
2,684,259	-				-0.3
2,684,265	+				+0.4
2,684,265	+				+0.3
2,684,266	+				+0.0
2,684,271	+				+0.1
2,684,272	-				-0.0
2,684,274	-				+1.0
2,684,274	-				-0.2
2,684,274	-				-0.4
2,684,303	+				+0.2
2,684,304	+				+0.5
2,684,304	+				+0.0
2,684,312	-				+0.3
2,684,312	-				+1.0
2,684,325	+				+0.3
2,684,333	-				+0.3
2,684,366	+				+0.5
2,684,371	-				-0.7
2,684,374	-				+0.5
2,684,432	+				-0.1
2,684,433	+				-0.3
2,684,433	+				+0.8
2,684,441	-				+0.5
2,684,441	-				+0.3
2,684,448	+				-0.7
2,684,463	-				+0.5
2,684,469	+				-0.0
2,684,469	+				+0.6
2,684,469	+				-0.2
2,684,469	+				-0.3
2,684,469	+				+0.4
2,684,469	+				+0.1
2,684,469	+				-0.9
2,684,469	+				+0.4
2,684,472	-				+0.3
2,684,477	-				+0.4
2,684,477	-				+1.1
2,684,477	-				+0.4
2,684,489	+				+0.2
2,684,506	+				-0.0
2,684,506	+				-0.6
2,684,506	+				+1.1
2,684,506	+				-0.3
2,684,506	+				-0.4
2,684,506	+				+0.2
2,684,506	+				-0.2
2,684,506	+				+0.2
2,684,506	+				+0.2
2,684,506	+				-1.6
2,684,506	+				+0.2
2,684,506	+				-0.1
2,684,506	+				-0.0
2,684,506	+				+0.7
2,684,506	+				+0.2
2,684,511	+				-0.2
2,684,514	-				-0.6
2,684,514	-				-0.7
2,684,514	-				+0.3
2,684,514	-				+0.5
2,684,514	-				-0.9
2,684,514	-				-0.1
2,684,514	-				+0.1
2,684,514	-				+0.3
2,684,514	-				-0.3
2,684,514	-				-1.2
2,684,514	-				+0.8
2,684,514	-				+0.5
2,684,514	-				+0.2
2,684,519	-				+0.6
2,684,519	-				-0.2
2,684,566	+				+0.3
2,684,574	-				-0.6
2,684,605	-		SO2552	0.18	+0.1
2,684,621	-		SO2552	0.22	-0.3
2,684,633	+		SO2552	0.25	+1.8
2,684,633	+		SO2552	0.25	-1.9
2,684,633	+		SO2552	0.25	+0.0
2,684,635	+		SO2552	0.26	-1.3
2,684,636	+		SO2552	0.26	-0.4
2,684,640	-		SO2552	0.27	+0.3
2,684,640	-		SO2552	0.27	-0.7
2,684,641	-		SO2552	0.28	+0.6
2,684,641	-		SO2552	0.28	-0.4
2,684,641	-		SO2552	0.28	-0.4
2,684,646	+		SO2552	0.29	-0.0
2,684,646	+		SO2552	0.29	+0.1
2,684,648	+		SO2552	0.29	-0.3
2,684,648	+		SO2552	0.29	+0.1
2,684,654	-		SO2552	0.31	+0.2
2,684,654	-		SO2552	0.31	-0.9
2,684,654	-		SO2552	0.31	-0.4
2,684,656	+		SO2552	0.31	-0.1
2,684,713	+		SO2552	0.47	-0.0
2,684,713	+		SO2552	0.47	-0.8
2,684,732	-		SO2552	0.52	+0.3
2,684,739	+		SO2552	0.53	-0.2
2,684,744	+		SO2552	0.55	-0.5
2,684,744	+		SO2552	0.55	-0.3
2,684,744	+		SO2552	0.55	+0.9
2,684,744	+		SO2552	0.55	+0.2
2,684,744	+		SO2552	0.55	-0.5
2,684,744	+		SO2552	0.55	-0.0
2,684,752	-		SO2552	0.57	+0.4
2,684,752	-		SO2552	0.57	-0.1
2,684,752	-		SO2552	0.57	+0.9
2,684,752	-		SO2552	0.57	+0.5
2,684,767	-		SO2552	0.61	+0.4
2,684,795	-		SO2552	0.68	-0.6
2,684,797	+		SO2552	0.69	+0.4
2,684,821	-		SO2552	0.75	+1.1
2,684,826	+		SO2552	0.76	+0.1
2,684,826	+		SO2552	0.76	+0.0
2,684,826	+		SO2552	0.76	+0.2
2,684,859	+		SO2552	0.85	+0.4
2,684,867	-		SO2552	0.87	-0.6
2,684,908	+				+0.5
2,684,908	+				+0.2
2,684,910	+				+0.0
2,684,924	-				+0.2
2,684,949	+				-0.3
2,684,949	+				+0.5
2,684,957	-				+0.3
2,684,957	-				-0.1
2,684,957	-				+2.2
2,684,957	-				+0.9
2,684,957	-				+0.7
2,684,973	+				-0.3
2,684,976	-				+1.1
2,684,976	-				+1.1
2,684,981	-				+1.0
2,685,064	+				-0.2
2,685,072	-				+0.0
2,685,075	-				+0.5
2,685,086	+				+0.5
2,685,116	+		SO2553	0.13	-0.5
2,685,152	+		SO2553	0.17	+0.8
2,685,152	+		SO2553	0.17	+0.2
2,685,160	-		SO2553	0.18	-0.3
2,685,160	-		SO2553	0.18	+0.2
2,685,160	-		SO2553	0.18	+0.6
2,685,160	-		SO2553	0.18	-0.5
2,685,160	-		SO2553	0.18	+0.6
2,685,160	-		SO2553	0.18	+0.2
2,685,160	-		SO2553	0.18	+0.1
2,685,160	-		SO2553	0.18	+1.0
2,685,160	-		SO2553	0.18	+0.5
2,685,164	+		SO2553	0.19	-0.4
2,685,164	+		SO2553	0.19	+0.6
2,685,164	+		SO2553	0.19	+1.1
2,685,164	+		SO2553	0.19	+0.4
2,685,185	+		SO2553	0.21	-0.5
2,685,207	+		SO2553	0.24	+0.4
2,685,212	+		SO2553	0.24	+0.6
2,685,216	+		SO2553	0.25	-0.0
2,685,225	-		SO2553	0.26	-0.4
2,685,226	+		SO2553	0.26	+0.9
2,685,226	+		SO2553	0.26	-0.6
2,685,233	-		SO2553	0.27	-0.3
2,685,233	-		SO2553	0.27	+0.2
2,685,262	+		SO2553	0.30	+0.6
2,685,271	+		SO2553	0.32	-0.1
2,685,272	+		SO2553	0.32	+0.3
2,685,327	-		SO2553	0.38	+0.8
2,685,394	-		SO2553	0.46	-0.0
2,685,398	+		SO2553	0.47	+0.8
2,685,406	+		SO2553	0.48	+0.7
2,685,414	+		SO2553	0.49	+0.3
2,685,429	-		SO2553	0.50	+0.5
2,685,432	+		SO2553	0.51	-0.2
2,685,438	+		SO2553	0.51	-0.0
2,685,470	+		SO2553	0.55	+0.0
2,685,470	+		SO2553	0.55	-0.4
2,685,478	-		SO2553	0.56	-0.2
2,685,526	-		SO2553	0.62	+1.2
2,685,533	-		SO2553	0.63	+1.1
2,685,534	-		SO2553	0.63	-0.1
2,685,534	-		SO2553	0.63	+0.8
2,685,568	+		SO2553	0.67	+0.5
2,685,576	-		SO2553	0.68	+0.7
2,685,642	-		SO2553	0.76	+1.2
2,685,678	-		SO2553	0.80	+0.8
2,685,689	+		SO2553	0.81	-0.4
2,685,689	+		SO2553	0.81	+0.3
2,685,704	+		SO2553	0.83	+1.5
2,685,704	+		SO2553	0.83	+1.6
2,685,712	-		SO2553	0.84	+0.9
2,685,723	+		SO2553	0.86	+1.0
2,685,723	+		SO2553	0.86	-1.2
2,685,743	+		SO2553	0.88	+1.5
2,685,745	+		SO2553	0.88	+0.4
2,685,771	+				-0.4
2,685,779	-				+1.6
2,685,779	-				+2.2
2,685,780	+				+0.7
2,685,788	-				+0.9
2,685,790	+				+0.3
2,685,917	+				+0.1
2,685,925	-				+0.4
2,685,944	-				+0.4
2,685,948	+				+0.3
2,685,992	+				-1.2
2,686,005	-				+0.9
2,686,012	+				-0.2
2,686,020	+				-0.4
2,686,053	-				-0.8
2,686,053	-				+1.2
2,686,096	+		SO2554	0.20	-0.0
2,686,127	+		SO2554	0.29	-0.4
2,686,263	-		SO2554	0.67	+0.1
2,686,454	+				+0.2
2,686,454	-				-0.3
2,686,456	+				-0.0
2,686,464	+				+0.6
2,686,515	+				+0.7
2,686,669	+		SO2555	0.53	+0.6
2,686,677	-		SO2555	0.56	+0.0
2,686,753	+		SO2555	0.78	+0.5
2,686,753	+		SO2555	0.78	+0.5
2,686,753	+				+0.7
2,686,761	-		SO2555	0.80	-0.2
2,686,761	-		SO2555	0.80	+0.9
2,686,761	-		SO2555	0.80	-0.2
2,686,761	-		SO2555	0.80	-0.8
2,686,761	-		SO2555	0.80	-0.9
2,686,761	-		SO2555	0.80	+0.3