Strain Fitness in Shewanella oneidensis MR-1 around SO0691

Experiment: Uridine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0690 and SO0691 are separated by 400 nucleotidesSO0691 and galM are separated by 104 nucleotides SO0690: SO0690 - type II DNA modification methyltransferase, putative (NCBI ptt file), at 708,075 to 708,836 SO0690 SO0691: SO0691 - hypothetical protein (NCBI ptt file), at 709,237 to 709,641 SO0691 SO0693: galM - aldose 1-epimerase (NCBI ptt file), at 709,746 to 710,777 galM Position (kb) 709 710Strain fitness (log2 ratio) -2 -1 0 1 2at 708.254 kb on + strand, within SO0690at 708.277 kb on + strand, within SO0690at 708.299 kb on + strand, within SO0690at 708.299 kb on + strand, within SO0690at 708.309 kb on + strand, within SO0690at 708.317 kb on - strand, within SO0690at 708.319 kb on + strand, within SO0690at 708.327 kb on - strand, within SO0690at 708.327 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.361 kb on - strand, within SO0690at 708.432 kb on + strand, within SO0690at 708.461 kb on - strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.468 kb on + strand, within SO0690at 708.476 kb on - strand, within SO0690at 708.476 kb on - strand, within SO0690at 708.497 kb on + strand, within SO0690at 708.497 kb on + strand, within SO0690at 708.559 kb on + strand, within SO0690at 708.567 kb on - strand, within SO0690at 708.567 kb on - strand, within SO0690at 708.578 kb on + strand, within SO0690at 708.580 kb on - strand, within SO0690at 708.603 kb on - strand, within SO0690at 708.624 kb on + strand, within SO0690at 708.632 kb on - strand, within SO0690at 708.638 kb on + strand, within SO0690at 708.646 kb on - strand, within SO0690at 708.682 kb on - strand, within SO0690at 708.696 kb on + strand, within SO0690at 708.714 kb on - strand, within SO0690at 708.714 kb on - strand, within SO0690at 708.786 kb on + strandat 708.794 kb on - strandat 708.796 kb on + strandat 708.796 kb on + strandat 708.796 kb on + strandat 708.809 kb on - strandat 708.862 kb on - strandat 708.862 kb on - strandat 708.919 kb on + strandat 708.934 kb on - strandat 709.159 kb on + strandat 709.213 kb on - strandat 709.239 kb on + strandat 709.247 kb on - strandat 709.275 kb on + strandat 709.337 kb on - strand, within SO0691at 709.337 kb on - strand, within SO0691at 709.463 kb on - strand, within SO0691at 709.516 kb on + strand, within SO0691at 709.521 kb on + strand, within SO0691at 709.527 kb on + strand, within SO0691at 709.554 kb on + strand, within SO0691at 709.554 kb on + strand, within SO0691at 709.562 kb on - strand, within SO0691at 709.562 kb on - strand, within SO0691at 709.665 kb on + strandat 709.671 kb on + strandat 709.883 kb on + strand, within galMat 709.898 kb on + strand, within galMat 709.933 kb on + strand, within galMat 709.941 kb on + strand, within galMat 710.248 kb on - strand, within galMat 710.258 kb on + strand, within galMat 710.258 kb on + strand, within galMat 710.266 kb on - strand, within galMat 710.447 kb on - strand, within galMat 710.459 kb on + strand, within galMat 710.500 kb on - strand, within galMat 710.500 kb on - strand, within galMat 710.560 kb on + strandat 710.615 kb on - strand, within galMat 710.634 kb on - strand, within galM

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Per-strain Table

Position Strand Gene LocusTag Fraction Uridine (C)
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708,254 + SO0690 0.23 +1.0
708,277 + SO0690 0.27 +0.0
708,299 + SO0690 0.29 -0.1
708,299 + SO0690 0.29 -0.3
708,309 + SO0690 0.31 +0.9
708,317 - SO0690 0.32 +1.3
708,319 + SO0690 0.32 +0.2
708,327 - SO0690 0.33 +0.0
708,327 - SO0690 0.33 +0.0
708,361 - SO0690 0.38 +0.6
708,361 - SO0690 0.38 +0.3
708,361 - SO0690 0.38 -2.5
708,361 - SO0690 0.38 +0.2
708,432 + SO0690 0.47 +0.1
708,461 - SO0690 0.51 +0.6
708,468 + SO0690 0.52 -0.3
708,468 + SO0690 0.52 -0.5
708,468 + SO0690 0.52 +1.2
708,476 - SO0690 0.53 +0.4
708,476 - SO0690 0.53 +0.3
708,497 + SO0690 0.55 +0.1
708,497 + SO0690 0.55 +0.7
708,559 + SO0690 0.64 +1.2
708,567 - SO0690 0.65 +0.3
708,567 - SO0690 0.65 +0.7
708,578 + SO0690 0.66 +0.2
708,580 - SO0690 0.66 +0.2
708,603 - SO0690 0.69 +0.5
708,624 + SO0690 0.72 +0.3
708,632 - SO0690 0.73 -0.1
708,638 + SO0690 0.74 +0.2
708,646 - SO0690 0.75 +0.1
708,682 - SO0690 0.80 +0.6
708,696 + SO0690 0.81 +0.7
708,714 - SO0690 0.84 +0.7
708,714 - SO0690 0.84 +0.4
708,786 + -0.1
708,794 - +0.6
708,796 + +1.0
708,796 + -1.4
708,796 + +0.7
708,809 - +0.4
708,862 - +0.8
708,862 - +0.9
708,919 + +0.3
708,934 - -0.7
709,159 + +1.4
709,213 - +1.8
709,239 + +0.9
709,247 - +1.9
709,275 + +2.5
709,337 - SO0691 0.25 +0.8
709,337 - SO0691 0.25 +1.9
709,463 - SO0691 0.56 +1.9
709,516 + SO0691 0.69 +1.0
709,521 + SO0691 0.70 +1.2
709,527 + SO0691 0.72 +1.7
709,554 + SO0691 0.78 +2.1
709,554 + SO0691 0.78 +0.9
709,562 - SO0691 0.80 +0.5
709,562 - SO0691 0.80 +0.9
709,665 + +0.2
709,671 + +0.2
709,883 + galM SO0693 0.13 +0.4
709,898 + galM SO0693 0.15 +0.5
709,933 + galM SO0693 0.18 +0.5
709,941 + galM SO0693 0.19 -0.2
710,248 - galM SO0693 0.49 +0.6
710,258 + galM SO0693 0.50 +1.0
710,258 + galM SO0693 0.50 +0.5
710,266 - galM SO0693 0.50 +0.3
710,447 - galM SO0693 0.68 +0.6
710,459 + galM SO0693 0.69 -0.9
710,500 - galM SO0693 0.73 +0.3
710,500 - galM SO0693 0.73 +0.6
710,560 + +2.2
710,615 - galM SO0693 0.84 +0.5
710,634 - galM SO0693 0.86 +0.6

Or see this region's nucleotide sequence