Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hutC and hutU are separated by 126 nucleotides hutU and hutH are separated by 64 nucleotides
SO0096: hutC - histidine utilization repressor (NCBI ptt file), at 103,967 to 104,674
hutC
SO0097: hutU - urocanate hydratase (NCBI ptt file), at 104,801 to 106,471
hutU
SO0098: hutH - histidine ammonia-lyase (NCBI ptt file), at 106,536 to 108,077
hutH
Position (kb) 104
105
106
107 Strain fitness (log2 ratio) -2
-1
0
1
2 at 103.820 kb on - strand at 103.887 kb on - strand at 103.897 kb on + strand at 103.912 kb on - strand at 104.018 kb on - strand at 104.019 kb on + strand at 104.019 kb on + strand at 104.115 kb on - strand, within hutC at 104.137 kb on + strand, within hutC at 104.145 kb on - strand, within hutC at 104.190 kb on + strand, within hutC at 104.242 kb on + strand, within hutC at 104.242 kb on + strand, within hutC at 104.242 kb on + strand, within hutC at 104.250 kb on - strand, within hutC at 104.250 kb on - strand, within hutC at 104.250 kb on - strand, within hutC at 104.250 kb on - strand, within hutC at 104.275 kb on + strand, within hutC at 104.283 kb on + strand, within hutC at 104.362 kb on + strand, within hutC at 104.387 kb on - strand, within hutC at 104.419 kb on - strand, within hutC at 104.541 kb on - strand, within hutC at 104.562 kb on + strand, within hutC at 104.591 kb on + strand, within hutC at 104.591 kb on + strand, within hutC at 104.599 kb on - strand, within hutC at 104.599 kb on - strand, within hutC at 104.599 kb on - strand, within hutC at 104.704 kb on + strand at 104.773 kb on + strand at 104.789 kb on - strand at 104.817 kb on + strand at 104.817 kb on + strand at 104.825 kb on - strand at 104.840 kb on + strand at 104.885 kb on + strand at 104.908 kb on + strand at 105.052 kb on - strand, within hutU at 105.241 kb on - strand, within hutU at 105.241 kb on - strand, within hutU at 105.260 kb on - strand, within hutU at 105.260 kb on - strand, within hutU at 105.326 kb on + strand, within hutU at 105.334 kb on - strand, within hutU at 105.381 kb on + strand, within hutU at 105.381 kb on + strand, within hutU at 105.382 kb on - strand, within hutU at 105.382 kb on - strand, within hutU at 105.469 kb on - strand, within hutU at 105.567 kb on + strand, within hutU at 105.567 kb on + strand, within hutU at 105.575 kb on - strand, within hutU at 105.592 kb on - strand, within hutU at 105.592 kb on - strand, within hutU at 105.599 kb on - strand, within hutU at 105.628 kb on + strand, within hutU at 105.628 kb on + strand, within hutU at 105.628 kb on + strand, within hutU at 105.636 kb on - strand, within hutU at 105.637 kb on - strand, within hutU at 105.724 kb on - strand, within hutU at 105.839 kb on + strand, within hutU at 105.839 kb on + strand, within hutU at 105.839 kb on + strand, within hutU at 105.847 kb on - strand, within hutU at 105.847 kb on - strand, within hutU at 105.957 kb on + strand, within hutU at 105.962 kb on + strand, within hutU at 105.965 kb on - strand, within hutU at 105.965 kb on - strand, within hutU at 105.980 kb on + strand, within hutU at 106.011 kb on + strand, within hutU at 106.046 kb on - strand, within hutU at 106.061 kb on + strand, within hutU at 106.061 kb on + strand, within hutU at 106.061 kb on + strand, within hutU at 106.061 kb on + strand, within hutU at 106.069 kb on - strand, within hutU at 106.161 kb on - strand, within hutU at 106.161 kb on - strand, within hutU at 106.183 kb on - strand, within hutU at 106.193 kb on - strand, within hutU at 106.223 kb on + strand, within hutU at 106.231 kb on - strand, within hutU at 106.231 kb on - strand, within hutU at 106.233 kb on - strand, within hutU at 106.264 kb on - strand, within hutU at 106.264 kb on - strand, within hutU at 106.382 kb on + strand at 106.436 kb on + strand at 106.443 kb on + strand at 106.443 kb on + strand at 106.443 kb on + strand at 106.443 kb on + strand at 106.443 kb on + strand at 106.443 kb on + strand at 106.443 kb on + strand at 106.451 kb on - strand at 106.451 kb on - strand at 106.451 kb on - strand at 106.451 kb on - strand at 106.573 kb on + strand at 106.581 kb on - strand at 106.618 kb on + strand at 106.630 kb on + strand at 106.741 kb on - strand, within hutH at 106.747 kb on - strand, within hutH at 106.785 kb on - strand, within hutH at 106.899 kb on - strand, within hutH at 106.922 kb on + strand, within hutH at 106.934 kb on + strand, within hutH at 106.934 kb on + strand, within hutH at 106.942 kb on - strand, within hutH at 106.942 kb on - strand, within hutH at 106.942 kb on - strand, within hutH at 106.942 kb on - strand, within hutH at 106.995 kb on + strand, within hutH at 107.038 kb on + strand, within hutH at 107.043 kb on + strand, within hutH at 107.046 kb on - strand, within hutH at 107.116 kb on + strand, within hutH at 107.116 kb on + strand, within hutH at 107.116 kb on + strand, within hutH at 107.116 kb on + strand, within hutH at 107.123 kb on - strand, within hutH at 107.124 kb on - strand, within hutH at 107.124 kb on - strand, within hutH at 107.129 kb on - strand, within hutH at 107.134 kb on + strand, within hutH at 107.149 kb on - strand, within hutH at 107.166 kb on + strand, within hutH at 107.174 kb on - strand, within hutH at 107.208 kb on - strand, within hutH at 107.221 kb on + strand, within hutH at 107.307 kb on + strand, within hutH at 107.365 kb on + strand, within hutH at 107.389 kb on - strand, within hutH at 107.389 kb on - strand, within hutH at 107.411 kb on - strand, within hutH at 107.416 kb on - strand, within hutH at 107.416 kb on - strand, within hutH at 107.460 kb on + strand, within hutH at 107.468 kb on - strand, within hutH
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 103,820 - +0.1 103,887 - +0.6 103,897 + -0.7 103,912 - +0.4 104,018 - +1.5 104,019 + +0.5 104,019 + +1.4 104,115 - hutC SO0096 0.21 -0.6 104,137 + hutC SO0096 0.24 +0.3 104,145 - hutC SO0096 0.25 +1.4 104,190 + hutC SO0096 0.31 -1.1 104,242 + hutC SO0096 0.39 -0.0 104,242 + hutC SO0096 0.39 -0.0 104,242 + hutC SO0096 0.39 -0.2 104,250 - hutC SO0096 0.40 +0.3 104,250 - hutC SO0096 0.40 +0.5 104,250 - hutC SO0096 0.40 +0.2 104,250 - hutC SO0096 0.40 +1.1 104,275 + hutC SO0096 0.44 +0.3 104,283 + hutC SO0096 0.45 -0.4 104,362 + hutC SO0096 0.56 +0.5 104,387 - hutC SO0096 0.59 +1.1 104,419 - hutC SO0096 0.64 +0.9 104,541 - hutC SO0096 0.81 +1.8 104,562 + hutC SO0096 0.84 -0.3 104,591 + hutC SO0096 0.88 -0.0 104,591 + hutC SO0096 0.88 -0.2 104,599 - hutC SO0096 0.89 +0.3 104,599 - hutC SO0096 0.89 +0.2 104,599 - hutC SO0096 0.89 -1.3 104,704 + +0.8 104,773 + +0.7 104,789 - +0.1 104,817 + +0.8 104,817 + +0.5 104,825 - +0.3 104,840 + +0.8 104,885 + +0.5 104,908 + +0.4 105,052 - hutU SO0097 0.15 +0.2 105,241 - hutU SO0097 0.26 -0.2 105,241 - hutU SO0097 0.26 +0.4 105,260 - hutU SO0097 0.27 +0.9 105,260 - hutU SO0097 0.27 +0.3 105,326 + hutU SO0097 0.31 -0.0 105,334 - hutU SO0097 0.32 -0.9 105,381 + hutU SO0097 0.35 -0.7 105,381 + hutU SO0097 0.35 +1.7 105,382 - hutU SO0097 0.35 +1.0 105,382 - hutU SO0097 0.35 +0.5 105,469 - hutU SO0097 0.40 -0.0 105,567 + hutU SO0097 0.46 +0.6 105,567 + hutU SO0097 0.46 +0.4 105,575 - hutU SO0097 0.46 +0.8 105,592 - hutU SO0097 0.47 -0.2 105,592 - hutU SO0097 0.47 +0.4 105,599 - hutU SO0097 0.48 +0.9 105,628 + hutU SO0097 0.49 +0.5 105,628 + hutU SO0097 0.49 +0.3 105,628 + hutU SO0097 0.49 +1.9 105,636 - hutU SO0097 0.50 +1.1 105,637 - hutU SO0097 0.50 +1.0 105,724 - hutU SO0097 0.55 +0.4 105,839 + hutU SO0097 0.62 +0.6 105,839 + hutU SO0097 0.62 +0.6 105,839 + hutU SO0097 0.62 +0.5 105,847 - hutU SO0097 0.63 +1.5 105,847 - hutU SO0097 0.63 +0.9 105,957 + hutU SO0097 0.69 -2.1 105,962 + hutU SO0097 0.69 +0.8 105,965 - hutU SO0097 0.70 +0.3 105,965 - hutU SO0097 0.70 +0.8 105,980 + hutU SO0097 0.71 +0.3 106,011 + hutU SO0097 0.72 +0.9 106,046 - hutU SO0097 0.75 +0.4 106,061 + hutU SO0097 0.75 +0.3 106,061 + hutU SO0097 0.75 +0.8 106,061 + hutU SO0097 0.75 +0.5 106,061 + hutU SO0097 0.75 +0.6 106,069 - hutU SO0097 0.76 +2.1 106,161 - hutU SO0097 0.81 +0.5 106,161 - hutU SO0097 0.81 +1.3 106,183 - hutU SO0097 0.83 +0.5 106,193 - hutU SO0097 0.83 +0.6 106,223 + hutU SO0097 0.85 +0.1 106,231 - hutU SO0097 0.86 +0.9 106,231 - hutU SO0097 0.86 +0.7 106,233 - hutU SO0097 0.86 +0.5 106,264 - hutU SO0097 0.88 +0.5 106,264 - hutU SO0097 0.88 +0.5 106,382 + -0.7 106,436 + -0.2 106,443 + -0.3 106,443 + +0.1 106,443 + -0.1 106,443 + -0.2 106,443 + -0.1 106,443 + -0.2 106,443 + +0.3 106,451 - +0.3 106,451 - +0.5 106,451 - +1.0 106,451 - +0.9 106,573 + -0.0 106,581 - +0.2 106,618 + +1.1 106,630 + +0.9 106,741 - hutH SO0098 0.13 -0.2 106,747 - hutH SO0098 0.14 +0.3 106,785 - hutH SO0098 0.16 +0.5 106,899 - hutH SO0098 0.24 -0.1 106,922 + hutH SO0098 0.25 +1.2 106,934 + hutH SO0098 0.26 +1.3 106,934 + hutH SO0098 0.26 +0.3 106,942 - hutH SO0098 0.26 -2.4 106,942 - hutH SO0098 0.26 +0.5 106,942 - hutH SO0098 0.26 +0.4 106,942 - hutH SO0098 0.26 +0.6 106,995 + hutH SO0098 0.30 +0.3 107,038 + hutH SO0098 0.33 +0.8 107,043 + hutH SO0098 0.33 +0.5 107,046 - hutH SO0098 0.33 +0.5 107,116 + hutH SO0098 0.38 +1.3 107,116 + hutH SO0098 0.38 +0.7 107,116 + hutH SO0098 0.38 +0.6 107,116 + hutH SO0098 0.38 +0.8 107,123 - hutH SO0098 0.38 +0.9 107,124 - hutH SO0098 0.38 +0.6 107,124 - hutH SO0098 0.38 +1.1 107,129 - hutH SO0098 0.38 +0.3 107,134 + hutH SO0098 0.39 +0.3 107,149 - hutH SO0098 0.40 +0.4 107,166 + hutH SO0098 0.41 +0.3 107,174 - hutH SO0098 0.41 +0.9 107,208 - hutH SO0098 0.44 +0.5 107,221 + hutH SO0098 0.44 +0.5 107,307 + hutH SO0098 0.50 +0.7 107,365 + hutH SO0098 0.54 +0.7 107,389 - hutH SO0098 0.55 +0.4 107,389 - hutH SO0098 0.55 +1.1 107,411 - hutH SO0098 0.57 +0.1 107,416 - hutH SO0098 0.57 +0.4 107,416 - hutH SO0098 0.57 +0.2 107,460 + hutH SO0098 0.60 +0.4 107,468 - hutH SO0098 0.60 +0.7
Or see this region's nucleotide sequence