Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05800

Experiment: marine broth tube 15C sample2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c05790 and PGA1_c05800 are separated by 132 nucleotidesPGA1_c05800 and PGA1_c05810 are separated by 130 nucleotides PGA1_c05790: PGA1_c05790 - primosomal protein N, at 592,337 to 594,532 _c05790 PGA1_c05800: PGA1_c05800 - YeeE/YedE family (DUF395)., at 594,665 to 595,729 _c05800 PGA1_c05810: PGA1_c05810 - putative transporter protein, MFS family, at 595,860 to 597,095 _c05810 Position (kb) 594 595 596Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 594.603 kb on + strandat 594.611 kb on - strandat 594.681 kb on + strandat 594.712 kb on + strandat 594.717 kb on + strandat 594.809 kb on - strand, within PGA1_c05800at 594.811 kb on + strand, within PGA1_c05800at 594.842 kb on + strand, within PGA1_c05800at 594.919 kb on - strand, within PGA1_c05800at 594.926 kb on + strand, within PGA1_c05800at 595.016 kb on - strand, within PGA1_c05800at 595.021 kb on - strand, within PGA1_c05800at 595.093 kb on + strand, within PGA1_c05800at 595.221 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.246 kb on + strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.254 kb on - strand, within PGA1_c05800at 595.365 kb on - strand, within PGA1_c05800at 595.398 kb on + strand, within PGA1_c05800at 595.400 kb on - strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.524 kb on + strand, within PGA1_c05800at 595.532 kb on - strand, within PGA1_c05800at 595.691 kb on - strandat 595.693 kb on + strandat 595.693 kb on + strandat 595.701 kb on - strandat 595.711 kb on - strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.797 kb on + strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.805 kb on - strandat 595.838 kb on - strandat 595.862 kb on + strandat 595.862 kb on + strandat 595.870 kb on - strandat 595.913 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.938 kb on + strandat 595.945 kb on - strandat 595.946 kb on - strandat 595.964 kb on - strandat 595.966 kb on + strandat 596.032 kb on - strand, within PGA1_c05810at 596.033 kb on + strand, within PGA1_c05810at 596.036 kb on + strand, within PGA1_c05810at 596.036 kb on - strand, within PGA1_c05810at 596.041 kb on - strand, within PGA1_c05810at 596.051 kb on - strand, within PGA1_c05810at 596.081 kb on - strand, within PGA1_c05810at 596.087 kb on + strand, within PGA1_c05810at 596.116 kb on - strand, within PGA1_c05810at 596.128 kb on - strand, within PGA1_c05810at 596.173 kb on + strand, within PGA1_c05810at 596.186 kb on + strand, within PGA1_c05810at 596.191 kb on + strand, within PGA1_c05810at 596.194 kb on - strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.209 kb on - strand, within PGA1_c05810at 596.278 kb on - strand, within PGA1_c05810at 596.299 kb on - strand, within PGA1_c05810at 596.336 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.369 kb on - strand, within PGA1_c05810at 596.473 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.517 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.627 kb on - strand, within PGA1_c05810at 596.714 kb on + strand, within PGA1_c05810at 596.719 kb on + strand, within PGA1_c05810at 596.724 kb on + strand, within PGA1_c05810at 596.727 kb on - strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth tube 15C sample2
remove
594,603 + -2.3
594,611 - -0.9
594,681 + -0.1
594,712 + -0.1
594,717 + -1.3
594,809 - PGA1_c05800 0.14 -0.8
594,811 + PGA1_c05800 0.14 +0.1
594,842 + PGA1_c05800 0.17 -1.1
594,919 - PGA1_c05800 0.24 -0.2
594,926 + PGA1_c05800 0.25 +0.8
595,016 - PGA1_c05800 0.33 -0.1
595,021 - PGA1_c05800 0.33 +1.2
595,093 + PGA1_c05800 0.40 -0.3
595,221 + PGA1_c05800 0.52 -0.3
595,246 + PGA1_c05800 0.55 +0.8
595,246 + PGA1_c05800 0.55 -2.1
595,246 + PGA1_c05800 0.55 +1.0
595,254 - PGA1_c05800 0.55 +0.2
595,254 - PGA1_c05800 0.55 -1.6
595,254 - PGA1_c05800 0.55 +0.9
595,365 - PGA1_c05800 0.66 -0.4
595,398 + PGA1_c05800 0.69 -0.2
595,400 - PGA1_c05800 0.69 +0.0
595,524 + PGA1_c05800 0.81 -0.1
595,524 + PGA1_c05800 0.81 -0.3
595,524 + PGA1_c05800 0.81 -0.7
595,524 + PGA1_c05800 0.81 +0.6
595,532 - PGA1_c05800 0.81 -0.5
595,691 - -0.3
595,693 + +1.4
595,693 + -2.9
595,701 - -1.5
595,711 - -3.5
595,797 + -0.8
595,797 + +0.3
595,797 + +1.2
595,797 + -1.0
595,797 + -0.3
595,797 + +0.8
595,805 - -0.1
595,805 - -1.1
595,805 - -1.6
595,805 - -0.7
595,838 - -0.5
595,862 + +0.7
595,862 + -0.4
595,870 - -0.2
595,913 + +0.5
595,938 + -0.2
595,938 + +0.2
595,938 + +0.8
595,938 + +0.0
595,945 - -0.4
595,946 - +1.8
595,964 - -0.0
595,966 + -0.8
596,032 - PGA1_c05810 0.14 +0.8
596,033 + PGA1_c05810 0.14 -1.0
596,036 + PGA1_c05810 0.14 -1.9
596,036 - PGA1_c05810 0.14 -0.9
596,041 - PGA1_c05810 0.15 -0.5
596,051 - PGA1_c05810 0.15 -0.2
596,081 - PGA1_c05810 0.18 -1.4
596,087 + PGA1_c05810 0.18 +1.6
596,116 - PGA1_c05810 0.21 +0.8
596,128 - PGA1_c05810 0.22 +0.5
596,173 + PGA1_c05810 0.25 -0.5
596,186 + PGA1_c05810 0.26 -0.4
596,191 + PGA1_c05810 0.27 -0.3
596,194 - PGA1_c05810 0.27 -0.5
596,201 + PGA1_c05810 0.28 +0.1
596,201 + PGA1_c05810 0.28 -1.8
596,201 + PGA1_c05810 0.28 -1.0
596,201 + PGA1_c05810 0.28 +0.6
596,201 + PGA1_c05810 0.28 -0.1
596,209 - PGA1_c05810 0.28 +0.0
596,278 - PGA1_c05810 0.34 +0.8
596,299 - PGA1_c05810 0.36 -0.4
596,336 - PGA1_c05810 0.39 -1.8
596,359 - PGA1_c05810 0.40 +1.3
596,359 - PGA1_c05810 0.40 -1.1
596,369 - PGA1_c05810 0.41 +0.6
596,473 + PGA1_c05810 0.50 -0.6
596,507 + PGA1_c05810 0.52 -0.7
596,507 + PGA1_c05810 0.52 -1.4
596,517 + PGA1_c05810 0.53 +0.0
596,565 + PGA1_c05810 0.57 -2.4
596,565 + PGA1_c05810 0.57 +1.0
596,614 + PGA1_c05810 0.61 +1.3
596,614 + PGA1_c05810 0.61 -0.4
596,614 + PGA1_c05810 0.61 +1.7
596,614 + PGA1_c05810 0.61 -0.1
596,622 - PGA1_c05810 0.62 -1.7
596,622 - PGA1_c05810 0.62 -0.9
596,622 - PGA1_c05810 0.62 -1.0
596,622 - PGA1_c05810 0.62 -0.0
596,622 - PGA1_c05810 0.62 +0.3
596,627 - PGA1_c05810 0.62 -0.2
596,714 + PGA1_c05810 0.69 -0.3
596,719 + PGA1_c05810 0.69 -0.2
596,724 + PGA1_c05810 0.70 -1.6
596,727 - PGA1_c05810 0.70 +0.3
596,729 + PGA1_c05810 0.70 +0.5
596,729 + PGA1_c05810 0.70 -1.5
596,729 + PGA1_c05810 0.70 -1.8

Or see this region's nucleotide sequence