Strain Fitness in Shewanella amazonensis SB2B around Sama_3381

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
4,007,225	+		Sama_3378	0.43	+0.7
4,007,226	-		Sama_3378	0.43	+0.2
4,007,226	-		Sama_3378	0.43	+1.1
4,007,226	-		Sama_3378	0.43	-0.3
4,007,226	-		Sama_3378	0.43	-0.3
4,007,250	+		Sama_3378	0.46	+1.5
4,007,251	-		Sama_3378	0.46	-1.5
4,007,256	-		Sama_3378	0.47	+0.6
4,007,256	-		Sama_3378	0.47	+0.2
4,007,256	-		Sama_3378	0.47	+0.2
4,007,283	+		Sama_3378	0.50	-0.7
4,007,283	+		Sama_3378	0.50	+1.2
4,007,283	+		Sama_3378	0.50	+0.6
4,007,283	+		Sama_3378	0.50	+0.4
4,007,284	-		Sama_3378	0.50	-0.5
4,007,311	+		Sama_3378	0.53	-1.4
4,007,311	+		Sama_3378	0.53	+0.5
4,007,311	+		Sama_3378	0.53	-0.3
4,007,311	+		Sama_3378	0.53	+0.5
4,007,311	+		Sama_3378	0.53	+1.5
4,007,311	+		Sama_3378	0.53	+0.6
4,007,312	-		Sama_3378	0.53	+2.2
4,007,312	-		Sama_3378	0.53	-0.1
4,007,312	-		Sama_3378	0.53	+0.1
4,007,312	-		Sama_3378	0.53	-0.9
4,007,312	-		Sama_3378	0.53	+1.0
4,007,312	-		Sama_3378	0.53	-1.5
4,007,312	-		Sama_3378	0.53	-0.4
4,007,313	+		Sama_3378	0.54	-0.2
4,007,313	+		Sama_3378	0.54	+1.0
4,007,313	+		Sama_3378	0.54	+0.5
4,007,314	-		Sama_3378	0.54	+2.2
4,007,314	-		Sama_3378	0.54	+0.0
4,007,360	+		Sama_3378	0.59	+2.5
4,007,360	+		Sama_3378	0.59	-1.1
4,007,360	+		Sama_3378	0.59	-0.9
4,007,361	-		Sama_3378	0.59	-0.9
4,007,374	-		Sama_3378	0.61	-0.1
4,007,385	+		Sama_3378	0.62	-0.5
4,007,385	+		Sama_3378	0.62	-0.9
4,007,385	+		Sama_3378	0.62	-0.3
4,007,385	+		Sama_3378	0.62	-0.2
4,007,386	-		Sama_3378	0.62	-0.3
4,007,386	-		Sama_3378	0.62	+0.1
4,007,386	-		Sama_3378	0.62	-0.1
4,007,426	+		Sama_3378	0.67	-0.1
4,007,426	+		Sama_3378	0.67	+0.7
4,007,426	+		Sama_3378	0.67	-0.9
4,007,426	+		Sama_3378	0.67	-0.6
4,007,426	+		Sama_3378	0.67	+0.9
4,007,480	+		Sama_3378	0.74	-0.2
4,007,480	+		Sama_3378	0.74	+0.8
4,007,480	+		Sama_3378	0.74	+0.4
4,007,480	+		Sama_3378	0.74	+0.5
4,007,480	+		Sama_3378	0.74	-0.5
4,007,480	+		Sama_3378	0.74	+0.0
4,007,480	+		Sama_3378	0.74	-0.1
4,007,480	+		Sama_3378	0.74	+1.5
4,007,480	+		Sama_3378	0.74	+0.1
4,007,481	-		Sama_3378	0.74	-1.9
4,007,481	-		Sama_3378	0.74	+0.3
4,007,481	-		Sama_3378	0.74	-0.6
4,007,481	-		Sama_3378	0.74	-2.6
4,007,481	-		Sama_3378	0.74	-1.3
4,007,481	-		Sama_3378	0.74	+2.6
4,007,481	-		Sama_3378	0.74	-0.5
4,007,571	-		Sama_3378	0.85	-0.1
4,007,602	+		Sama_3378	0.88	+0.2
4,007,602	+		Sama_3378	0.88	-0.7
4,007,602	+		Sama_3378	0.88	-0.7
4,007,603	-		Sama_3378	0.89	+0.5
4,007,603	-		Sama_3378	0.89	-0.2
4,007,668	+				+0.9
4,007,670	+				+0.4
4,007,687	+				-0.7
4,007,701	+				-1.2
4,007,701	+				-2.0
4,007,701	+				-0.1
4,007,701	+				-0.2
4,007,702	-				-1.1
4,007,702	-				-0.6
4,007,702	-				+0.7
4,007,702	-				-0.7
4,007,767	+		Sama_3379	0.28	+0.5
4,007,768	-		Sama_3379	0.28	-2.4
4,007,840	+		Sama_3379	0.56	-0.3
4,007,843	+		Sama_3379	0.57	-0.1
4,007,844	-		Sama_3379	0.57	+0.2
4,007,844	-		Sama_3379	0.57	-3.6
4,007,860	+		Sama_3379	0.64	-0.4
4,007,860	+		Sama_3379	0.64	-1.7
4,007,861	-		Sama_3379	0.64	+1.2
4,007,861	-		Sama_3379	0.64	-0.5
4,007,861	-		Sama_3379	0.64	+1.0
4,007,902	-		Sama_3379	0.80	-0.5
4,007,928	-		Sama_3379	0.90	-0.9
4,007,952	+				-0.0
4,007,952	+				-1.0
4,007,952	+				-2.1
4,007,953	-				-0.5
4,007,953	-				-0.6
4,007,953	-				-2.2
4,007,958	+				-1.1
4,007,958	+				-0.7
4,007,958	+				-1.0
4,007,958	+				-0.1
4,008,055	+		Sama_3380	0.39	-1.1
4,008,055	+		Sama_3380	0.39	-0.5
4,008,151	+		Sama_3380	0.77	-2.0
4,008,155	+		Sama_3380	0.79	-0.4
4,008,155	+		Sama_3380	0.79	-1.5
4,008,155	+		Sama_3380	0.79	+0.0
4,008,215	+				-1.5
4,008,215	+				-0.5
4,008,216	-				+0.5
4,008,216	-				-0.9
4,008,216	-				+1.7
4,008,224	-				-1.0
4,008,249	+				-1.4
4,008,279	+		Sama_3381	0.13	-0.4
4,008,279	+		Sama_3381	0.13	+1.5
4,008,280	-		Sama_3381	0.13	-0.8
4,008,293	+		Sama_3381	0.16	-0.0
4,008,340	+		Sama_3381	0.24	-1.1
4,008,341	-		Sama_3381	0.24	-2.1
4,008,341	-		Sama_3381	0.24	-0.1
4,008,395	+		Sama_3381	0.34	+0.7
4,008,438	+		Sama_3381	0.42	+0.7
4,008,439	-		Sama_3381	0.42	-0.7
4,008,559	+		Sama_3381	0.64	+0.7
4,008,559	+		Sama_3381	0.64	-0.3
4,008,559	+		Sama_3381	0.64	-0.9
4,008,559	+		Sama_3381	0.64	+1.9
4,008,560	-		Sama_3381	0.64	+0.5
4,008,560	-		Sama_3381	0.64	+0.0
4,008,560	-		Sama_3381	0.64	-2.3
4,008,565	-		Sama_3381	0.65	-0.2
4,008,608	-		Sama_3381	0.73	-0.5
4,008,628	-		Sama_3381	0.77	-0.7
4,008,628	-		Sama_3381	0.77	-0.2
4,008,667	-		Sama_3381	0.84	-2.0
4,008,667	-		Sama_3381	0.84	+0.6
4,008,667	-		Sama_3381	0.84	+1.0
4,008,667	-		Sama_3381	0.84	-3.0
4,008,667	-		Sama_3381	0.84	-0.6
4,008,667	-		Sama_3381	0.84	-1.3
4,008,667	-		Sama_3381	0.84	+0.2
4,008,667	-		Sama_3381	0.84	-0.1
4,008,685	-		Sama_3381	0.87	-0.5
4,008,685	-		Sama_3381	0.87	-1.3
4,008,693	-		Sama_3381	0.89	+0.7
4,008,723	+				+0.5
4,008,734	+				-0.5
4,008,789	+				+0.4
4,008,789	+				-1.9
4,008,789	+				-0.5
4,008,790	-				+1.0
4,008,790	-				-0.5
4,008,829	+				+0.2
4,008,829	+				-1.7
4,008,830	-				-0.0
4,008,869	+				-0.4
4,009,001	-		Sama_3382	0.18	+0.7
4,009,001	-		Sama_3382	0.18	+0.2
4,009,030	+		Sama_3382	0.20	+0.8
4,009,030	+		Sama_3382	0.20	-0.0
4,009,030	+		Sama_3382	0.20	-0.5
4,009,030	+		Sama_3382	0.20	-0.2
4,009,030	+		Sama_3382	0.20	-0.3
4,009,031	-		Sama_3382	0.20	+0.3
4,009,031	-		Sama_3382	0.20	+1.2
4,009,031	-		Sama_3382	0.20	+0.3
4,009,031	-		Sama_3382	0.20	+0.0
4,009,173	+		Sama_3382	0.30	+1.9
4,009,173	+		Sama_3382	0.30	-2.7
4,009,174	-		Sama_3382	0.30	-0.7
4,009,174	-		Sama_3382	0.30	+0.5
4,009,285	-		Sama_3382	0.38	-1.1
4,009,289	+		Sama_3382	0.38	-0.9
4,009,289	+		Sama_3382	0.38	-1.2
4,009,290	-		Sama_3382	0.38	-0.0
4,009,317	+		Sama_3382	0.40	-0.2
4,009,317	+		Sama_3382	0.40	-1.2
4,009,317	+		Sama_3382	0.40	-0.8
4,009,317	+		Sama_3382	0.40	+0.2
4,009,317	+		Sama_3382	0.40	-0.1
4,009,318	-		Sama_3382	0.41	-1.5
4,009,318	-		Sama_3382	0.41	+1.5
4,009,318	-		Sama_3382	0.41	-1.3
4,009,318	-		Sama_3382	0.41	-1.2
4,009,318	-		Sama_3382	0.41	+0.3
4,009,318	-		Sama_3382	0.41	-0.1
4,009,318	-		Sama_3382	0.41	-1.2
4,009,318	-		Sama_3382	0.41	-0.1
4,009,318	-		Sama_3382	0.41	-0.5
4,009,331	+		Sama_3382	0.41	+0.3
4,009,381	+		Sama_3382	0.45	+1.7
4,009,381	+		Sama_3382	0.45	-1.4
4,009,381	+		Sama_3382	0.45	+1.0
4,009,381	+		Sama_3382	0.45	+0.5
4,009,382	-		Sama_3382	0.45	-0.6
4,009,386	+		Sama_3382	0.45	+1.0
4,009,386	+		Sama_3382	0.45	+0.0
4,009,386	+		Sama_3382	0.45	-1.3
4,009,404	+		Sama_3382	0.47	-1.3
4,009,404	+		Sama_3382	0.47	+0.4
4,009,404	+		Sama_3382	0.47	-2.9
4,009,405	-		Sama_3382	0.47	-0.8
4,009,405	-		Sama_3382	0.47	-0.8
4,009,407	+		Sama_3382	0.47	-0.9
4,009,437	-		Sama_3382	0.49	-0.8
4,009,570	-		Sama_3382	0.59	+0.6
4,009,570	-		Sama_3382	0.59	+0.4
4,009,593	+		Sama_3382	0.60	+0.0
4,009,679	-		Sama_3382	0.67	+0.1
4,009,719	+		Sama_3382	0.70	-1.3
4,009,719	+		Sama_3382	0.70	-0.0
4,009,719	+		Sama_3382	0.70	-0.7
4,009,720	-		Sama_3382	0.70	-0.5
4,009,720	-		Sama_3382	0.70	-1.2