Strain Fitness in Shewanella amazonensis SB2B around Sama_3142

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
3,728,475	+		Sama_3140	0.87	+0.5
3,728,475	+		Sama_3140	0.87	-0.3
3,728,475	+		Sama_3140	0.87	+1.2
3,728,475	+		Sama_3140	0.87	+1.4
3,728,476	-		Sama_3140	0.87	+1.7
3,728,476	-		Sama_3140	0.87	-0.3
3,728,476	-		Sama_3140	0.87	+0.3
3,728,476	-		Sama_3140	0.87	+1.7
3,728,476	-		Sama_3140	0.87	+0.5
3,728,476	-		Sama_3140	0.87	+0.7
3,728,476	-		Sama_3140	0.87	+1.8
3,728,479	+		Sama_3140	0.88	-0.3
3,728,479	+		Sama_3140	0.88	+0.9
3,728,480	-		Sama_3140	0.88	-0.6
3,728,505	+				+1.2
3,728,505	+				-1.6
3,728,505	+				+0.6
3,728,505	+				+0.4
3,728,505	+				+2.1
3,728,505	+				+2.1
3,728,506	-				+1.3
3,728,506	-				+1.0
3,728,506	-				+1.1
3,728,506	-				+1.6
3,728,506	-				+0.9
3,728,506	-				+0.9
3,728,506	-				+0.4
3,728,506	-				+0.9
3,728,509	+				+1.0
3,728,509	+				+1.6
3,728,509	+				+1.6
3,728,509	+				+0.8
3,728,510	-				+0.4
3,728,510	-				+0.7
3,728,510	-				+1.2
3,728,510	-				+0.6
3,728,518	+				+1.4
3,728,545	+				+1.6
3,728,545	+				+0.9
3,728,545	+				+0.9
3,728,545	+				+1.4
3,728,545	+				-1.0
3,728,545	+				+0.7
3,728,545	+				+2.4
3,728,545	+				+0.2
3,728,545	+				+1.9
3,728,545	+				+0.8
3,728,546	-				+1.3
3,728,546	-				+0.2
3,728,546	-				+1.4
3,728,546	-				+1.3
3,728,546	-				+0.3
3,728,571	+				+0.6
3,728,571	+				+1.0
3,728,571	+				-0.0
3,728,571	+				+0.4
3,728,571	+				+0.8
3,728,571	+				+0.9
3,728,572	-				+1.5
3,728,572	-				+0.9
3,728,572	-				-0.8
3,728,572	-				+0.2
3,728,572	-				-0.8
3,728,572	-				+2.0
3,728,598	+				+1.0
3,728,612	+				+1.0
3,728,613	-				+2.4
3,728,613	-				+0.1
3,728,613	-				+1.3
3,728,673	+		Sama_3141	0.11	+0.0
3,728,723	+		Sama_3141	0.16	+1.8
3,728,723	+		Sama_3141	0.16	+2.7
3,728,723	+		Sama_3141	0.16	+0.9
3,728,723	+		Sama_3141	0.16	+1.4
3,728,724	-		Sama_3141	0.16	+0.9
3,728,839	+		Sama_3141	0.29	+1.9
3,728,861	+		Sama_3141	0.31	+3.8
3,728,862	-		Sama_3141	0.32	+1.8
3,728,879	+		Sama_3141	0.33	+2.6
3,728,879	+		Sama_3141	0.33	+1.8
3,728,879	+		Sama_3141	0.33	+1.5
3,728,880	-		Sama_3141	0.34	+1.1
3,728,978	+		Sama_3141	0.44	+0.3
3,728,978	+		Sama_3141	0.44	+0.4
3,728,978	+		Sama_3141	0.44	+1.4
3,728,978	+		Sama_3141	0.44	+1.2
3,728,978	+		Sama_3141	0.44	+0.7
3,728,978	+		Sama_3141	0.44	+1.5
3,728,978	+		Sama_3141	0.44	+0.1
3,728,978	+		Sama_3141	0.44	+1.4
3,728,978	+		Sama_3141	0.44	+0.0
3,728,979	-		Sama_3141	0.44	+0.0
3,728,979	-		Sama_3141	0.44	+0.6
3,728,979	-		Sama_3141	0.44	+0.9
3,728,979	-		Sama_3141	0.44	+1.2
3,728,979	-		Sama_3141	0.44	+0.4
3,728,979	-		Sama_3141	0.44	+1.8
3,728,979	-		Sama_3141	0.44	+2.7
3,728,979	-		Sama_3141	0.44	+1.4
3,728,979	-		Sama_3141	0.44	+0.7
3,728,988	+		Sama_3141	0.45	+2.3
3,728,988	+		Sama_3141	0.45	-0.4
3,728,988	+		Sama_3141	0.45	+0.4
3,728,989	-		Sama_3141	0.46	-2.6
3,728,989	-		Sama_3141	0.46	+0.5
3,728,989	-		Sama_3141	0.46	+1.0
3,729,009	+		Sama_3141	0.48	+1.0
3,729,010	-		Sama_3141	0.48	+1.0
3,729,010	-		Sama_3141	0.48	+1.1
3,729,010	-		Sama_3141	0.48	-0.6
3,729,021	+		Sama_3141	0.49	+0.1
3,729,088	+		Sama_3141	0.56	+1.4
3,729,088	+		Sama_3141	0.56	-0.2
3,729,088	+		Sama_3141	0.56	+2.0
3,729,088	+		Sama_3141	0.56	+2.1
3,729,088	+		Sama_3141	0.56	+0.1
3,729,088	+		Sama_3141	0.56	+1.2
3,729,088	+		Sama_3141	0.56	+1.5
3,729,088	+		Sama_3141	0.56	+0.9
3,729,088	+		Sama_3141	0.56	+1.0
3,729,088	+		Sama_3141	0.56	+0.9
3,729,088	+		Sama_3141	0.56	-1.0
3,729,088	+		Sama_3141	0.56	+3.2
3,729,089	-		Sama_3141	0.57	+1.8
3,729,089	-		Sama_3141	0.57	+1.1
3,729,089	-		Sama_3141	0.57	+0.6
3,729,089	-		Sama_3141	0.57	+1.5
3,729,089	-		Sama_3141	0.57	+1.6
3,729,089	-		Sama_3141	0.57	+0.4
3,729,089	-		Sama_3141	0.57	+1.1
3,729,089	-		Sama_3141	0.57	+0.3
3,729,089	-		Sama_3141	0.57	+1.9
3,729,089	-		Sama_3141	0.57	+1.3
3,729,089	-		Sama_3141	0.57	+1.1
3,729,089	-		Sama_3141	0.57	+1.7
3,729,089	-		Sama_3141	0.57	-0.4
3,729,089	-		Sama_3141	0.57	+1.1
3,729,153	-		Sama_3141	0.64	+1.1
3,729,277	+		Sama_3141	0.77	+1.6
3,729,335	+		Sama_3141	0.84	+1.5
3,729,335	+		Sama_3141	0.84	+0.7
3,729,335	+		Sama_3141	0.84	+1.7
3,729,335	+		Sama_3141	0.84	+1.4
3,729,399	+				+2.2
3,729,400	-				+0.5
3,729,465	+				+2.9
3,729,499	+				+1.8
3,729,499	+				+1.7
3,729,499	+				+0.9
3,729,499	+				+0.6
3,729,499	+				+1.9
3,729,499	+				+0.6
3,729,499	+				+2.8
3,729,500	-				-0.6
3,729,500	-				+1.1
3,729,500	-				+2.5
3,729,500	-				+0.9
3,729,500	-				+0.1
3,729,500	-				+0.4
3,729,504	+				+1.3
3,729,504	+				+0.6
3,729,504	+				+0.7
3,729,504	+				+0.9
3,729,504	+				+0.8
3,729,504	+				+1.7
3,729,504	+				+0.0
3,729,504	+				+0.5
3,729,505	-				+1.4
3,729,505	-				+1.5
3,729,505	-				+1.2
3,729,505	-				+0.9
3,729,505	-				+0.5
3,729,505	-				+0.7
3,729,505	-				+1.0
3,729,505	-				+1.1
3,729,505	-				+0.9
3,729,505	-				-2.1
3,729,505	-				+0.0
3,729,505	-				+1.1
3,729,567	+				-0.1
3,729,567	+				+0.4
3,729,567	+				+1.5
3,729,567	+				+3.8
3,729,568	-				-1.4
3,729,568	-				+1.1
3,729,568	-				+0.7
3,729,568	-				+1.2
3,729,595	+		Sama_3142	0.11	-1.1
3,729,596	-		Sama_3142	0.11	+1.4
3,729,596	-		Sama_3142	0.11	+1.4
3,729,596	-		Sama_3142	0.11	+0.4
3,729,596	-		Sama_3142	0.11	+1.4
3,729,596	-		Sama_3142	0.11	+0.9
3,729,645	+		Sama_3142	0.15	+0.9
3,729,645	+		Sama_3142	0.15	+1.0
3,729,645	+		Sama_3142	0.15	-0.6
3,729,645	+		Sama_3142	0.15	+1.5
3,729,645	+		Sama_3142	0.15	+1.2
3,729,646	-		Sama_3142	0.15	+1.0
3,729,646	-		Sama_3142	0.15	+1.6
3,729,646	-		Sama_3142	0.15	+0.1
3,729,646	-		Sama_3142	0.15	+1.8
3,729,646	-		Sama_3142	0.15	+1.4
3,729,646	-		Sama_3142	0.15	-0.6
3,729,720	+		Sama_3142	0.21	+0.6
3,729,721	-		Sama_3142	0.22	+0.4
3,729,721	-		Sama_3142	0.22	-1.2
3,729,735	+		Sama_3142	0.23	+1.1
3,729,735	+		Sama_3142	0.23	+1.5
3,729,735	+		Sama_3142	0.23	+1.4
3,729,750	+		Sama_3142	0.24	+1.8
3,729,750	+		Sama_3142	0.24	+2.0
3,729,750	+		Sama_3142	0.24	+0.8
3,729,750	+		Sama_3142	0.24	-0.2
3,729,751	-		Sama_3142	0.24	+0.2
3,729,867	+		Sama_3142	0.34	+2.4
3,729,873	+		Sama_3142	0.34	+0.9
3,729,873	+		Sama_3142	0.34	-0.2
3,729,874	-		Sama_3142	0.34	+1.2
3,729,874	-		Sama_3142	0.34	+1.3
3,729,895	+		Sama_3142	0.36	-1.4
3,729,915	+		Sama_3142	0.38	+2.2
3,729,915	+		Sama_3142	0.38	+1.4
3,729,915	+		Sama_3142	0.38	+1.8
3,729,916	-		Sama_3142	0.38	+0.6
3,729,916	-		Sama_3142	0.38	-0.1
3,729,916	-		Sama_3142	0.38	-0.6
3,729,916	-		Sama_3142	0.38	-0.1
3,730,033	-		Sama_3142	0.48	+1.3
3,730,067	+		Sama_3142	0.51	+0.8
3,730,067	+		Sama_3142	0.51	-1.4
3,730,067	+		Sama_3142	0.51	+1.4
3,730,067	+		Sama_3142	0.51	+1.9
3,730,067	+		Sama_3142	0.51	+0.0
3,730,067	+		Sama_3142	0.51	+0.8
3,730,067	+		Sama_3142	0.51	+0.9
3,730,068	-		Sama_3142	0.51	+1.5
3,730,068	-		Sama_3142	0.51	+2.1
3,730,068	-		Sama_3142	0.51	+1.2
3,730,068	-		Sama_3142	0.51	+1.1
3,730,068	-		Sama_3142	0.51	+2.0
3,730,068	-		Sama_3142	0.51	+0.8
3,730,068	-		Sama_3142	0.51	-0.1
3,730,068	-		Sama_3142	0.51	+1.6
3,730,098	+		Sama_3142	0.53	+0.2
3,730,099	-		Sama_3142	0.53	+0.7
3,730,188	+		Sama_3142	0.61	+1.1
3,730,188	+		Sama_3142	0.61	+0.9
3,730,189	-		Sama_3142	0.61	+0.7
3,730,189	-		Sama_3142	0.61	+2.1
3,730,236	+		Sama_3142	0.65	+0.8
3,730,315	-		Sama_3142	0.71	+1.4
3,730,315	-		Sama_3142	0.71	+0.4
3,730,440	-		Sama_3142	0.82	-0.2
3,730,449	+		Sama_3142	0.82	+1.2
3,730,449	+		Sama_3142	0.82	+0.2
3,730,449	+		Sama_3142	0.82	+0.8
3,730,450	-		Sama_3142	0.83	+0.4
3,730,450	-		Sama_3142	0.83	-1.7
3,730,545	+				+1.0
3,730,545	+				+0.7
3,730,545	+				+1.9
3,730,548	+				+1.5
3,730,588	+				-0.0
3,730,589	-				+0.4
3,730,589	-				+1.2
3,730,710	-				-0.1
3,730,727	+				+0.1
3,730,729	+				+1.6
3,730,729	+				+1.1
3,730,729	+				+1.0
3,730,729	+				-0.1
3,730,730	-				-1.3
3,730,730	-				-1.6
3,730,730	-				+0.0
3,730,730	-				-0.6
3,730,730	-				-1.6
3,730,733	+				+1.2
3,730,733	+				+1.3
3,730,733	+				+0.8
3,730,733	+				+1.6
3,730,733	+				+0.0
3,730,733	+				+0.2
3,730,733	+				+1.4
3,730,734	-				+0.7
3,730,734	-				-1.7
3,730,734	-				-2.1
3,730,734	-				+0.1
3,730,734	-				-1.4
3,730,734	-				-3.2
3,730,737	+				+0.7
3,730,737	+				+1.5
3,730,737	+				+0.6
3,730,737	+				+1.6
3,730,738	-				-0.9
3,730,795	+		Sama_3143	0.20	+1.4
3,730,795	+		Sama_3143	0.20	-0.3
3,730,796	-		Sama_3143	0.20	-0.1
3,730,796	-		Sama_3143	0.20	+0.4
3,730,796	-		Sama_3143	0.20	+1.4
3,730,796	-		Sama_3143	0.20	+0.1
3,730,829	+		Sama_3143	0.32	+2.2
3,730,829	+		Sama_3143	0.32	+1.6
3,730,830	-		Sama_3143	0.32	+0.1
3,730,830	-		Sama_3143	0.32	-0.2
3,730,830	-		Sama_3143	0.32	+1.4
3,730,901	-		Sama_3143	0.56	+0.7
3,730,901	-		Sama_3143	0.56	-2.2
3,730,911	+		Sama_3143	0.60	+2.2
3,730,911	+		Sama_3143	0.60	+0.7
3,730,911	+		Sama_3143	0.60	+0.0
3,730,912	-		Sama_3143	0.60	-1.1
3,730,973	+		Sama_3143	0.81	-0.4
3,730,973	+		Sama_3143	0.81	-1.6
3,730,988	+		Sama_3143	0.86	+0.2
3,730,989	-		Sama_3143	0.86	+1.9
3,730,996	+		Sama_3143	0.88	+0.2
3,730,996	+		Sama_3143	0.88	+2.0
3,731,036	+				+2.5
3,731,067	+				-0.2
3,731,082	-				+1.4
3,731,082	-				+1.8
3,731,114	-				-1.3
3,731,124	-				+2.7
3,731,124	-				+1.9
3,731,124	-				+0.3
3,731,154	+				-0.5
3,731,179	+				+0.2
3,731,179	+				+0.2
3,731,179	+				+0.4
3,731,179	+				-0.4
3,731,179	+				+0.1
3,731,179	+				-0.4
3,731,180	-				-1.0
3,731,180	-				-2.4
3,731,180	-				-3.4
3,731,180	-				-0.5
3,731,180	-				+1.6
3,731,180	-				-1.0
3,731,180	-				+0.0
3,731,180	-				-0.0
3,731,180	-				-2.2
3,731,180	-				-1.4
3,731,202	-				-0.6
3,731,213	+				-1.8
3,731,213	+				+0.3
3,731,214	-				-1.1
3,731,214	-				+1.7
3,731,214	-				-0.3
3,731,214	-				-1.1
3,731,214	-				-0.6
3,731,298	-				-0.4
3,731,355	+				-0.8
3,731,355	+				-0.9
3,731,356	-				-0.5
3,731,356	-				-0.4
3,731,362	-				+1.4
3,731,413	+		Sama_3144	0.18	-0.2
3,731,414	-		Sama_3144	0.18	-0.5
3,731,435	+		Sama_3144	0.25	+0.4
3,731,435	+		Sama_3144	0.25	+0.4
3,731,436	-		Sama_3144	0.25	+0.4
3,731,532	+		Sama_3144	0.54	+0.3
3,731,533	-		Sama_3144	0.54	+0.4
3,731,543	+		Sama_3144	0.57	-0.8
3,731,543	+		Sama_3144	0.57	-0.2
3,731,639	+		Sama_3144	0.86	+0.4