Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_3003 and Sama_3004 are separated by 393 nucleotides Sama_3004 and Sama_3005 are separated by 84 nucleotides Sama_3005 and Sama_3006 overlap by 20 nucleotides
Sama_3003: Sama_3003 - hypothetical protein (RefSeq), at 3,576,053 to 3,576,829
_3003
Sama_3004: Sama_3004 - cAMP-regulatory protein (RefSeq), at 3,577,223 to 3,577,858
_3004
Sama_3005: Sama_3005 - hypothetical protein (RefSeq), at 3,577,943 to 3,578,287
_3005
Sama_3006: Sama_3006 - response regulator receiver protein (RefSeq), at 3,578,268 to 3,578,942
_3006
Position (kb)
3577
3578 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3576.438 kb on + strand, within Sama_3003 at 3576.438 kb on + strand, within Sama_3003 at 3576.438 kb on + strand, within Sama_3003 at 3576.439 kb on - strand, within Sama_3003 at 3576.439 kb on - strand, within Sama_3003 at 3576.439 kb on - strand, within Sama_3003 at 3576.439 kb on - strand, within Sama_3003 at 3576.439 kb on - strand, within Sama_3003 at 3576.442 kb on + strand, within Sama_3003 at 3576.442 kb on + strand, within Sama_3003 at 3576.495 kb on + strand, within Sama_3003 at 3576.495 kb on + strand, within Sama_3003 at 3576.496 kb on - strand, within Sama_3003 at 3576.496 kb on - strand, within Sama_3003 at 3576.496 kb on - strand, within Sama_3003 at 3576.496 kb on - strand, within Sama_3003 at 3576.640 kb on - strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.654 kb on + strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.655 kb on - strand, within Sama_3003 at 3576.724 kb on + strand, within Sama_3003 at 3576.724 kb on + strand, within Sama_3003 at 3576.724 kb on + strand, within Sama_3003 at 3576.725 kb on - strand, within Sama_3003 at 3576.725 kb on - strand, within Sama_3003 at 3576.725 kb on - strand, within Sama_3003 at 3576.781 kb on + strand at 3576.782 kb on - strand at 3576.788 kb on + strand at 3576.789 kb on - strand at 3576.822 kb on + strand at 3576.822 kb on + strand at 3576.823 kb on - strand at 3576.862 kb on - strand at 3576.879 kb on + strand at 3576.880 kb on - strand at 3576.945 kb on - strand at 3576.945 kb on - strand at 3576.958 kb on + strand at 3576.958 kb on + strand at 3576.958 kb on + strand at 3576.959 kb on - strand at 3576.959 kb on - strand at 3576.964 kb on - strand at 3576.972 kb on + strand at 3577.068 kb on + strand at 3577.069 kb on - strand at 3577.082 kb on - strand at 3577.102 kb on + strand at 3577.102 kb on + strand at 3577.192 kb on - strand at 3577.195 kb on + strand at 3577.196 kb on - strand at 3577.273 kb on - strand at 3577.285 kb on + strand at 3577.296 kb on - strand, within Sama_3004 at 3577.346 kb on + strand, within Sama_3004 at 3577.346 kb on + strand, within Sama_3004 at 3577.346 kb on + strand, within Sama_3004 at 3577.347 kb on - strand, within Sama_3004 at 3577.347 kb on - strand, within Sama_3004 at 3577.347 kb on - strand, within Sama_3004 at 3577.347 kb on - strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.349 kb on + strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.350 kb on - strand, within Sama_3004 at 3577.353 kb on + strand, within Sama_3004 at 3577.353 kb on + strand, within Sama_3004 at 3577.353 kb on + strand, within Sama_3004 at 3577.353 kb on + strand, within Sama_3004 at 3577.354 kb on - strand, within Sama_3004 at 3577.354 kb on - strand, within Sama_3004 at 3577.356 kb on + strand, within Sama_3004 at 3577.356 kb on + strand, within Sama_3004 at 3577.357 kb on - strand, within Sama_3004 at 3577.357 kb on - strand, within Sama_3004 at 3577.357 kb on - strand, within Sama_3004 at 3577.357 kb on - strand, within Sama_3004 at 3577.357 kb on - strand, within Sama_3004 at 3577.378 kb on + strand, within Sama_3004 at 3577.378 kb on + strand, within Sama_3004 at 3577.415 kb on + strand, within Sama_3004 at 3577.421 kb on - strand, within Sama_3004 at 3577.620 kb on + strand, within Sama_3004 at 3577.844 kb on + strand at 3577.878 kb on + strand at 3577.878 kb on + strand at 3577.879 kb on - strand at 3577.942 kb on + strand at 3577.942 kb on + strand at 3577.942 kb on + strand at 3577.942 kb on + strand at 3577.942 kb on + strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.943 kb on - strand at 3577.963 kb on - strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.975 kb on + strand at 3577.976 kb on - strand at 3577.976 kb on - strand at 3577.976 kb on - strand at 3577.976 kb on - strand at 3577.976 kb on - strand at 3577.976 kb on - strand at 3577.976 kb on - strand at 3578.031 kb on - strand, within Sama_3005 at 3578.081 kb on - strand, within Sama_3005 at 3578.193 kb on + strand, within Sama_3005 at 3578.194 kb on - strand, within Sama_3005 at 3578.194 kb on - strand, within Sama_3005 at 3578.279 kb on - strand at 3578.354 kb on - strand, within Sama_3006 at 3578.360 kb on + strand, within Sama_3006 at 3578.379 kb on + strand, within Sama_3006 at 3578.400 kb on + strand, within Sama_3006 at 3578.401 kb on - strand, within Sama_3006 at 3578.468 kb on + strand, within Sama_3006 at 3578.483 kb on + strand, within Sama_3006 at 3578.483 kb on + strand, within Sama_3006 at 3578.559 kb on + strand, within Sama_3006 at 3578.559 kb on + strand, within Sama_3006 at 3578.559 kb on + strand, within Sama_3006 at 3578.559 kb on + strand, within Sama_3006 at 3578.560 kb on - strand, within Sama_3006 at 3578.560 kb on - strand, within Sama_3006 at 3578.560 kb on - strand, within Sama_3006 at 3578.560 kb on - strand, within Sama_3006 at 3578.568 kb on - strand, within Sama_3006 at 3578.568 kb on - strand, within Sama_3006 at 3578.568 kb on - strand, within Sama_3006 at 3578.614 kb on + strand, within Sama_3006 at 3578.615 kb on - strand, within Sama_3006 at 3578.661 kb on + strand, within Sama_3006 at 3578.662 kb on - strand, within Sama_3006 at 3578.674 kb on + strand, within Sama_3006 at 3578.675 kb on - strand, within Sama_3006 at 3578.765 kb on - strand, within Sama_3006 at 3578.811 kb on + strand, within Sama_3006 at 3578.812 kb on - strand, within Sama_3006 at 3578.812 kb on - strand, within Sama_3006 at 3578.853 kb on + strand, within Sama_3006 at 3578.854 kb on - strand, within Sama_3006
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,576,438 + Sama_3003 0.50 +1.0 3,576,438 + Sama_3003 0.50 +1.3 3,576,438 + Sama_3003 0.50 +2.0 3,576,439 - Sama_3003 0.50 +0.3 3,576,439 - Sama_3003 0.50 -0.1 3,576,439 - Sama_3003 0.50 +0.4 3,576,439 - Sama_3003 0.50 +1.0 3,576,439 - Sama_3003 0.50 -0.1 3,576,442 + Sama_3003 0.50 +0.7 3,576,442 + Sama_3003 0.50 +0.1 3,576,495 + Sama_3003 0.57 +1.0 3,576,495 + Sama_3003 0.57 +0.5 3,576,496 - Sama_3003 0.57 +0.8 3,576,496 - Sama_3003 0.57 +0.8 3,576,496 - Sama_3003 0.57 +1.7 3,576,496 - Sama_3003 0.57 +0.4 3,576,640 - Sama_3003 0.76 +0.0 3,576,654 + Sama_3003 0.77 -1.2 3,576,654 + Sama_3003 0.77 -0.2 3,576,654 + Sama_3003 0.77 +2.8 3,576,654 + Sama_3003 0.77 +0.0 3,576,654 + Sama_3003 0.77 +0.6 3,576,654 + Sama_3003 0.77 -0.3 3,576,654 + Sama_3003 0.77 -0.3 3,576,654 + Sama_3003 0.77 +0.6 3,576,654 + Sama_3003 0.77 +1.0 3,576,654 + Sama_3003 0.77 +0.3 3,576,654 + Sama_3003 0.77 +0.3 3,576,654 + Sama_3003 0.77 +0.0 3,576,654 + Sama_3003 0.77 +0.4 3,576,655 - Sama_3003 0.77 +0.2 3,576,655 - Sama_3003 0.77 +1.0 3,576,655 - Sama_3003 0.77 +0.0 3,576,655 - Sama_3003 0.77 +0.2 3,576,655 - Sama_3003 0.77 +1.0 3,576,655 - Sama_3003 0.77 +0.1 3,576,655 - Sama_3003 0.77 +0.9 3,576,655 - Sama_3003 0.77 +1.1 3,576,655 - Sama_3003 0.77 +0.9 3,576,655 - Sama_3003 0.77 +1.2 3,576,655 - Sama_3003 0.77 +0.7 3,576,655 - Sama_3003 0.77 -0.5 3,576,724 + Sama_3003 0.86 +0.1 3,576,724 + Sama_3003 0.86 +0.3 3,576,724 + Sama_3003 0.86 +2.6 3,576,725 - Sama_3003 0.86 +0.8 3,576,725 - Sama_3003 0.86 +0.4 3,576,725 - Sama_3003 0.86 -0.2 3,576,781 + +0.2 3,576,782 - +0.2 3,576,788 + -0.1 3,576,789 - +0.5 3,576,822 + -1.7 3,576,822 + +0.8 3,576,823 - -0.3 3,576,862 - -0.5 3,576,879 + +1.5 3,576,880 - -1.8 3,576,945 - -0.8 3,576,945 - -1.3 3,576,958 + -0.3 3,576,958 + +0.0 3,576,958 + +0.8 3,576,959 - -0.7 3,576,959 - +0.5 3,576,964 - -2.2 3,576,972 + -0.4 3,577,068 + -0.6 3,577,069 - -0.1 3,577,082 - -1.5 3,577,102 + -0.7 3,577,102 + +1.9 3,577,192 - -2.9 3,577,195 + -1.1 3,577,196 - -1.8 3,577,273 - -1.0 3,577,285 + -1.7 3,577,296 - Sama_3004 0.11 -1.8 3,577,346 + Sama_3004 0.19 -1.0 3,577,346 + Sama_3004 0.19 -2.1 3,577,346 + Sama_3004 0.19 -2.1 3,577,347 - Sama_3004 0.19 -1.7 3,577,347 - Sama_3004 0.19 -2.4 3,577,347 - Sama_3004 0.19 -2.4 3,577,347 - Sama_3004 0.19 +0.3 3,577,349 + Sama_3004 0.20 -0.3 3,577,349 + Sama_3004 0.20 -1.7 3,577,349 + Sama_3004 0.20 -0.7 3,577,349 + Sama_3004 0.20 -1.8 3,577,349 + Sama_3004 0.20 -1.9 3,577,349 + Sama_3004 0.20 -1.0 3,577,349 + Sama_3004 0.20 -1.3 3,577,350 - Sama_3004 0.20 -1.5 3,577,350 - Sama_3004 0.20 -1.0 3,577,350 - Sama_3004 0.20 -3.1 3,577,350 - Sama_3004 0.20 -2.0 3,577,350 - Sama_3004 0.20 -2.9 3,577,350 - Sama_3004 0.20 -1.3 3,577,350 - Sama_3004 0.20 -1.7 3,577,350 - Sama_3004 0.20 -2.5 3,577,353 + Sama_3004 0.20 -1.5 3,577,353 + Sama_3004 0.20 -2.1 3,577,353 + Sama_3004 0.20 -0.8 3,577,353 + Sama_3004 0.20 +0.3 3,577,354 - Sama_3004 0.21 -0.5 3,577,354 - Sama_3004 0.21 -2.7 3,577,356 + Sama_3004 0.21 -2.3 3,577,356 + Sama_3004 0.21 -1.8 3,577,357 - Sama_3004 0.21 -1.0 3,577,357 - Sama_3004 0.21 -1.9 3,577,357 - Sama_3004 0.21 +0.2 3,577,357 - Sama_3004 0.21 -1.8 3,577,357 - Sama_3004 0.21 -1.4 3,577,378 + Sama_3004 0.24 -1.8 3,577,378 + Sama_3004 0.24 -2.1 3,577,415 + Sama_3004 0.30 -3.0 3,577,421 - Sama_3004 0.31 -1.6 3,577,620 + Sama_3004 0.62 -2.1 3,577,844 + -2.0 3,577,878 + -1.1 3,577,878 + +0.5 3,577,879 - -0.8 3,577,942 + +0.4 3,577,942 + +0.3 3,577,942 + -0.1 3,577,942 + -0.3 3,577,942 + -0.0 3,577,943 - -0.2 3,577,943 - -0.4 3,577,943 - -0.1 3,577,943 - -0.3 3,577,943 - +1.1 3,577,943 - +1.0 3,577,943 - +0.3 3,577,943 - +0.8 3,577,943 - +0.1 3,577,943 - +0.2 3,577,943 - -0.8 3,577,943 - +0.8 3,577,943 - -0.4 3,577,943 - -1.0 3,577,963 - -0.3 3,577,975 + +0.3 3,577,975 + -0.3 3,577,975 + -0.5 3,577,975 + -0.3 3,577,975 + +0.5 3,577,975 + -1.0 3,577,975 + -0.9 3,577,975 + -1.5 3,577,975 + +0.7 3,577,976 - +1.2 3,577,976 - -1.4 3,577,976 - +0.6 3,577,976 - -0.4 3,577,976 - +0.9 3,577,976 - +0.3 3,577,976 - -1.8 3,578,031 - Sama_3005 0.26 +0.1 3,578,081 - Sama_3005 0.40 +0.4 3,578,193 + Sama_3005 0.72 -2.1 3,578,194 - Sama_3005 0.73 +1.1 3,578,194 - Sama_3005 0.73 +0.6 3,578,279 - -1.4 3,578,354 - Sama_3006 0.13 +0.3 3,578,360 + Sama_3006 0.14 -0.9 3,578,379 + Sama_3006 0.16 +0.2 3,578,400 + Sama_3006 0.20 -0.3 3,578,401 - Sama_3006 0.20 -1.5 3,578,468 + Sama_3006 0.30 +1.8 3,578,483 + Sama_3006 0.32 +0.1 3,578,483 + Sama_3006 0.32 +0.5 3,578,559 + Sama_3006 0.43 -0.1 3,578,559 + Sama_3006 0.43 -0.4 3,578,559 + Sama_3006 0.43 -1.1 3,578,559 + Sama_3006 0.43 +0.3 3,578,560 - Sama_3006 0.43 -1.1 3,578,560 - Sama_3006 0.43 -0.6 3,578,560 - Sama_3006 0.43 +1.1 3,578,560 - Sama_3006 0.43 -0.5 3,578,568 - Sama_3006 0.44 -0.6 3,578,568 - Sama_3006 0.44 +0.9 3,578,568 - Sama_3006 0.44 -1.9 3,578,614 + Sama_3006 0.51 -1.0 3,578,615 - Sama_3006 0.51 -1.0 3,578,661 + Sama_3006 0.58 +0.6 3,578,662 - Sama_3006 0.58 -0.9 3,578,674 + Sama_3006 0.60 +0.1 3,578,675 - Sama_3006 0.60 +1.5 3,578,765 - Sama_3006 0.74 +0.5 3,578,811 + Sama_3006 0.80 -1.5 3,578,812 - Sama_3006 0.81 -1.6 3,578,812 - Sama_3006 0.81 -0.1 3,578,853 + Sama_3006 0.87 +1.0 3,578,854 - Sama_3006 0.87 -0.3
Or see this region's nucleotide sequence