Strain Fitness in Shewanella amazonensis SB2B around Sama_2221

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
2,684,465	+		Sama_2220	0.50	+0.5
2,684,466	-		Sama_2220	0.50	+1.7
2,684,486	+		Sama_2220	0.51	+1.7
2,684,486	+		Sama_2220	0.51	+0.2
2,684,550	+		Sama_2220	0.55	+0.3
2,684,550	+		Sama_2220	0.55	-1.3
2,684,607	-		Sama_2220	0.59	+1.7
2,684,607	-		Sama_2220	0.59	+0.8
2,684,622	+		Sama_2220	0.60	+0.8
2,684,623	-		Sama_2220	0.60	-0.4
2,684,639	-		Sama_2220	0.61	+0.9
2,684,690	+		Sama_2220	0.64	-1.7
2,684,690	+		Sama_2220	0.64	+1.3
2,684,690	+		Sama_2220	0.64	-0.1
2,684,690	+		Sama_2220	0.64	-0.7
2,684,690	+		Sama_2220	0.64	+1.4
2,684,690	+		Sama_2220	0.64	-0.9
2,684,691	-		Sama_2220	0.65	+2.4
2,684,691	-		Sama_2220	0.65	+0.1
2,684,691	-		Sama_2220	0.65	-1.2
2,684,691	-		Sama_2220	0.65	-0.4
2,684,743	+		Sama_2220	0.68	+1.1
2,684,744	-		Sama_2220	0.68	+1.3
2,684,767	+		Sama_2220	0.69	-1.0
2,684,781	+		Sama_2220	0.70	+0.4
2,684,781	+		Sama_2220	0.70	+1.6
2,684,782	-		Sama_2220	0.70	+1.1
2,684,782	-		Sama_2220	0.70	+0.9
2,684,782	-		Sama_2220	0.70	+0.2
2,684,782	-		Sama_2220	0.70	-1.7
2,684,809	-		Sama_2220	0.72	+1.2
2,684,809	-		Sama_2220	0.72	-0.4
2,684,809	-		Sama_2220	0.72	+0.4
2,684,894	+		Sama_2220	0.78	+0.5
2,684,894	+		Sama_2220	0.78	+0.3
2,684,895	-		Sama_2220	0.78	-0.2
2,684,895	-		Sama_2220	0.78	-0.9
2,684,958	+		Sama_2220	0.82	-0.2
2,684,979	+		Sama_2220	0.83	+0.5
2,684,979	+		Sama_2220	0.83	+0.6
2,684,980	-		Sama_2220	0.83	+0.2
2,684,980	-		Sama_2220	0.83	+0.3
2,684,998	+		Sama_2220	0.84	-2.4
2,684,999	-		Sama_2220	0.85	+1.1
2,684,999	-		Sama_2220	0.85	+0.1
2,684,999	-		Sama_2220	0.85	-0.8
2,685,020	+		Sama_2220	0.86	+2.3
2,685,021	-		Sama_2220	0.86	+0.4
2,685,021	-		Sama_2220	0.86	-0.5
2,685,021	-		Sama_2220	0.86	-1.2
2,685,063	-		Sama_2220	0.89	+2.2
2,685,118	+				-1.8
2,685,166	+				+0.1
2,685,166	+				+0.7
2,685,177	+				+1.7
2,685,178	-				+1.4
2,685,182	+				+0.1
2,685,189	-				+1.6
2,685,237	-				-1.0
2,685,237	-				+1.4
2,685,237	-				-2.6
2,685,237	-				+0.4
2,685,257	+				+1.3
2,685,257	+				+1.3
2,685,257	+				+0.9
2,685,258	-				+0.8
2,685,258	-				-0.1
2,685,258	-				-0.5
2,685,316	+				+1.4
2,685,328	+				+0.7
2,685,329	-				+0.9
2,685,333	+				+0.6
2,685,333	+				+0.8
2,685,334	-				-0.5
2,685,334	-				+1.3
2,685,381	-				-1.6
2,685,408	+				+0.4
2,685,534	-	phhB	Sama_2221	0.27	-1.4
2,685,552	-	phhB	Sama_2221	0.33	+1.5
2,685,634	+	phhB	Sama_2221	0.57	+0.7
2,685,634	+	phhB	Sama_2221	0.57	+0.6
2,685,635	-	phhB	Sama_2221	0.57	+0.1
2,685,672	+	phhB	Sama_2221	0.68	-1.2
2,685,672	+	phhB	Sama_2221	0.68	-0.8
2,685,672	+	phhB	Sama_2221	0.68	+0.7
2,685,768	+				+1.0
2,685,781	-				-0.3
2,685,781	-				-1.0
2,685,791	+				-0.0
2,685,792	-				-0.8
2,685,792	-				-0.2
2,685,800	+				-0.0
2,685,800	+				+0.9
2,685,800	+				+1.7
2,685,801	-				+0.1
2,685,804	+				+1.4
2,685,917	+	phhA	Sama_2222	0.14	-1.9
2,685,917	+	phhA	Sama_2222	0.14	+0.7
2,685,917	+	phhA	Sama_2222	0.14	-1.9
2,685,917	+	phhA	Sama_2222	0.14	-1.9
2,685,918	-	phhA	Sama_2222	0.14	+0.7
2,685,948	-	phhA	Sama_2222	0.18	+0.1
2,685,948	-	phhA	Sama_2222	0.18	-2.5
2,685,948	-	phhA	Sama_2222	0.18	-2.6
2,685,948	-	phhA	Sama_2222	0.18	-0.5
2,685,950	+	phhA	Sama_2222	0.18	-1.9
2,685,950	+	phhA	Sama_2222	0.18	+0.2
2,685,950	+	phhA	Sama_2222	0.18	+0.5
2,685,951	-	phhA	Sama_2222	0.18	-0.7
2,685,956	+	phhA	Sama_2222	0.19	+0.4
2,685,957	-	phhA	Sama_2222	0.19	-0.3
2,686,010	+	phhA	Sama_2222	0.26	-1.3
2,686,010	+	phhA	Sama_2222	0.26	-0.3
2,686,010	+	phhA	Sama_2222	0.26	+0.8
2,686,024	+	phhA	Sama_2222	0.27	-0.5
2,686,025	-	phhA	Sama_2222	0.28	-0.4
2,686,064	-	phhA	Sama_2222	0.32	+0.1
2,686,064	-	phhA	Sama_2222	0.32	+0.7
2,686,067	+	phhA	Sama_2222	0.33	+0.5
2,686,067	+	phhA	Sama_2222	0.33	+1.6
2,686,067	+	phhA	Sama_2222	0.33	+0.4
2,686,068	-	phhA	Sama_2222	0.33	-0.8
2,686,112	+	phhA	Sama_2222	0.39	+0.9
2,686,113	-	phhA	Sama_2222	0.39	-1.4
2,686,135	+	phhA	Sama_2222	0.41	+0.5
2,686,135	+	phhA	Sama_2222	0.41	+0.1
2,686,135	+	phhA	Sama_2222	0.41	-1.5
2,686,136	-	phhA	Sama_2222	0.42	+0.1
2,686,136	-	phhA	Sama_2222	0.42	+0.8
2,686,136	-	phhA	Sama_2222	0.42	+0.4
2,686,136	-	phhA	Sama_2222	0.42	-0.9
2,686,177	+	phhA	Sama_2222	0.47	+0.0
2,686,177	+	phhA	Sama_2222	0.47	+0.5
2,686,178	-	phhA	Sama_2222	0.47	+0.9
2,686,178	-	phhA	Sama_2222	0.47	+0.2
2,686,178	-	phhA	Sama_2222	0.47	-0.3
2,686,264	+	phhA	Sama_2222	0.58	+0.2
2,686,265	-	phhA	Sama_2222	0.58	-0.4
2,686,265	-	phhA	Sama_2222	0.58	-2.5
2,686,290	-	phhA	Sama_2222	0.61	-0.1
2,686,465	+	phhA	Sama_2222	0.83	-1.1
2,686,465	+	phhA	Sama_2222	0.83	-0.3
2,686,466	-	phhA	Sama_2222	0.83	-0.7
2,686,466	-	phhA	Sama_2222	0.83	-0.1
2,686,466	-	phhA	Sama_2222	0.83	-0.3
2,686,510	+	phhA	Sama_2222	0.89	-0.5
2,686,511	-	phhA	Sama_2222	0.89	-0.2
2,686,511	-	phhA	Sama_2222	0.89	+0.1
2,686,554	+				-2.4
2,686,555	-				-0.9
2,686,585	+				-0.3
2,686,585	+				+2.0
2,686,585	+				+0.4
2,686,585	+				-0.9
2,686,585	+				+1.1
2,686,585	+				-0.2
2,686,586	-				+0.4
2,686,586	-				-0.2
2,686,586	-				+1.3
2,686,586	-				+1.1
2,686,586	-				+0.6
2,686,586	-				-0.8
2,686,586	-				-0.5
2,686,586	-				+1.1
2,686,586	-				+0.7
2,686,586	-				+0.9
2,686,592	+				+0.1
2,686,592	+				-0.4
2,686,592	+				-0.1
2,686,634	+				+1.1
2,686,635	-				+1.1
2,686,660	-				+0.3
2,686,675	+				+1.1
2,686,693	+				-0.3
2,686,763	-				+0.5