Strain Fitness in Shewanella amazonensis SB2B around Sama_2193

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
2,650,476	-	secD	Sama_2191	0.74	+1.1
2,650,895	-				-2.5
2,651,344	-				-1.4
2,651,344	-				+0.1
2,651,352	-				+0.8
2,651,383	-				-1.9
2,651,383	-				-1.9
2,651,383	-				-1.1
2,651,383	-				-0.7
2,651,383	-				-0.2
2,651,406	-				-2.8
2,651,458	-	tgt	Sama_2193	0.10	-1.5
2,651,477	-	tgt	Sama_2193	0.12	-3.5
2,651,551	+	tgt	Sama_2193	0.19	-1.5
2,651,554	-	tgt	Sama_2193	0.19	+1.7
2,651,567	-	tgt	Sama_2193	0.20	-1.7
2,651,670	-	tgt	Sama_2193	0.29	-1.2
2,651,742	+	tgt	Sama_2193	0.36	-0.9
2,651,839	-	tgt	Sama_2193	0.44	-1.5
2,651,895	+	tgt	Sama_2193	0.49	-1.7
2,651,896	-	tgt	Sama_2193	0.49	-2.2
2,651,896	-	tgt	Sama_2193	0.49	-2.6
2,652,053	+	tgt	Sama_2193	0.63	-1.7
2,652,183	-	tgt	Sama_2193	0.75	-1.0
2,652,364	-				-0.2
2,652,368	-				-2.5
2,652,446	-				-0.5
2,652,448	+				-0.5
2,652,634	-				-0.0
2,652,696	-				-0.5
2,652,706	+				-2.5
2,652,707	-				-0.8
2,652,707	-				-0.3
2,652,791	-	queA	Sama_2194	0.17	-0.3
2,652,817	-	queA	Sama_2194	0.19	-0.7
2,652,817	-	queA	Sama_2194	0.19	-1.2
2,652,822	+	queA	Sama_2194	0.20	-1.0
2,652,823	-	queA	Sama_2194	0.20	-1.1
2,652,968	-	queA	Sama_2194	0.34	+0.3
2,653,012	+	queA	Sama_2194	0.38	-0.9
2,653,126	-	queA	Sama_2194	0.49	-0.1
2,653,157	+	queA	Sama_2194	0.52	-1.4
2,653,157	+	queA	Sama_2194	0.52	-1.7
2,653,157	+	queA	Sama_2194	0.52	+0.1
2,653,158	-	queA	Sama_2194	0.52	-3.0
2,653,158	-	queA	Sama_2194	0.52	-0.1
2,653,206	+	queA	Sama_2194	0.57	-1.2
2,653,207	-	queA	Sama_2194	0.57	-1.6
2,653,208	+	queA	Sama_2194	0.57	-1.2
2,653,209	-	queA	Sama_2194	0.57	-2.0
2,653,224	+	queA	Sama_2194	0.58	+1.1
2,653,260	+	queA	Sama_2194	0.62	+0.5
2,653,260	+	queA	Sama_2194	0.62	-0.8
2,653,261	-	queA	Sama_2194	0.62	-0.4
2,653,261	-	queA	Sama_2194	0.62	-0.7
2,653,404	+	queA	Sama_2194	0.76	+1.3
2,653,405	-	queA	Sama_2194	0.76	+0.7
2,653,405	-	queA	Sama_2194	0.76	+0.3
2,653,405	-	queA	Sama_2194	0.76	+0.2
2,653,405	-	queA	Sama_2194	0.76	-2.8
2,653,406	-	queA	Sama_2194	0.76	-0.7