Strain Fitness in Shewanella amazonensis SB2B around Sama_2160

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
2,609,226	-		Sama_2159	0.48	-1.3
2,609,471	-		Sama_2159	0.70	-1.2
2,609,476	+		Sama_2159	0.70	-1.5
2,609,835	-				-0.5
2,609,835	-				-1.7
2,609,890	-				+1.3
2,609,890	-				-0.2
2,609,892	-				-0.7
2,609,892	-				+0.3
2,609,892	-				-0.1
2,609,920	+				-0.5
2,609,931	-				-0.4
2,609,931	-				-2.7
2,609,931	-				-1.7
2,610,147	-		Sama_2160	0.29	+0.1
2,610,147	-		Sama_2160	0.29	-2.0
2,610,160	-		Sama_2160	0.30	-1.9
2,610,160	-		Sama_2160	0.30	-2.2
2,610,169	-		Sama_2160	0.31	-1.7
2,610,185	+		Sama_2160	0.33	-1.2
2,610,186	-		Sama_2160	0.33	-1.7
2,610,212	+		Sama_2160	0.36	+0.1
2,610,213	-		Sama_2160	0.36	+0.4
2,610,272	-		Sama_2160	0.42	-0.7
2,610,375	+		Sama_2160	0.53	+0.8
2,610,376	-		Sama_2160	0.53	-1.8
2,610,431	+		Sama_2160	0.59	-0.9
2,610,431	+		Sama_2160	0.59	-2.8
2,610,431	+		Sama_2160	0.59	-0.5
2,610,431	+		Sama_2160	0.59	-0.0
2,610,432	-		Sama_2160	0.59	-0.1
2,610,432	-		Sama_2160	0.59	-1.5
2,610,432	-		Sama_2160	0.59	-1.5
2,610,432	-		Sama_2160	0.59	-2.8
2,610,432	-		Sama_2160	0.59	-3.5
2,610,432	-		Sama_2160	0.59	-1.2
2,610,432	-		Sama_2160	0.59	-0.4
2,610,433	+		Sama_2160	0.59	-1.1
2,610,434	-		Sama_2160	0.59	-0.9
2,610,458	-		Sama_2160	0.62	-0.7
2,610,507	-		Sama_2160	0.67	-2.0
2,610,546	-		Sama_2160	0.71	-2.0
2,610,580	-		Sama_2160	0.75	-1.3
2,610,616	-		Sama_2160	0.78	-0.6
2,610,709	-		Sama_2160	0.88	-2.4
2,610,720	-		Sama_2160	0.89	+0.9
2,610,720	-		Sama_2160	0.89	-2.4
2,610,723	-		Sama_2160	0.90	-2.2
2,610,723	-		Sama_2160	0.90	-1.2
2,610,723	-		Sama_2160	0.90	-1.0
2,610,723	-		Sama_2160	0.90	-0.7
2,610,725	-				-1.4
2,610,725	-				-0.5
2,610,725	-				-1.4
2,610,725	-				+0.1
2,610,766	-				-2.1
2,610,808	+				-1.6
2,610,809	-				-1.5
2,610,809	-				-2.4
2,610,809	-				-0.5
2,610,809	-				-1.5
2,610,809	-				-0.7
2,610,809	-				-1.9
2,610,836	-				+0.1
2,610,853	+				-0.5
2,610,853	+				-1.6
2,610,853	+				-1.3
2,610,910	+				+0.4
2,610,910	+				+0.1
2,610,910	+				-1.3
2,610,911	-				-0.9
2,610,911	-				-0.2
2,610,911	-				-0.2
2,611,052	+		Sama_2161	0.29	-0.7
2,611,087	-		Sama_2161	0.35	+0.5
2,611,124	-		Sama_2161	0.42	-1.0
2,611,135	+		Sama_2161	0.44	-0.5
2,611,135	+		Sama_2161	0.44	-1.5
2,611,135	+		Sama_2161	0.44	-0.9
2,611,158	-		Sama_2161	0.49	-1.0
2,611,158	-		Sama_2161	0.49	-0.8
2,611,158	-		Sama_2161	0.49	-1.5
2,611,229	-		Sama_2161	0.62	-1.4
2,611,525	-				-0.9
2,611,528	+				-1.3
2,611,529	-				+0.6
2,611,529	-				+0.8
2,611,529	-				-1.7
2,611,529	-				-0.1
2,611,564	-				+0.1
2,611,567	-				+0.1
2,611,576	-				-1.6
2,611,624	+		Sama_2162	0.15	+2.7
2,611,624	+		Sama_2162	0.15	+2.6
2,611,625	-		Sama_2162	0.15	+2.5
2,611,625	-		Sama_2162	0.15	+1.3
2,611,625	-		Sama_2162	0.15	+3.4
2,611,625	-		Sama_2162	0.15	+1.9
2,611,626	+		Sama_2162	0.15	+1.9
2,611,626	+		Sama_2162	0.15	+2.3
2,611,627	-		Sama_2162	0.15	+2.8
2,611,683	-		Sama_2162	0.27	+0.9
2,611,730	+		Sama_2162	0.37	+3.0
2,611,730	+		Sama_2162	0.37	+1.1
2,611,731	-		Sama_2162	0.37	+5.1