Strain Fitness in Shewanella amazonensis SB2B around Sama_1982

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_1980 and Sama_1981 are separated by 11 nucleotidesSama_1981 and Sama_1982 are separated by 57 nucleotidesSama_1982 and Sama_1983 are separated by 14 nucleotides Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335 _1980 Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273 _1981 Sama_1982: Sama_1982 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,410,331 to 2,411,290 _1982 Sama_1983: Sama_1983 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 2,411,305 to 2,412,333 _1983 Position (kb) 2410 2411 2412Strain fitness (log2 ratio) -1 0 1 2 3at 2409.349 kb on - strandat 2409.375 kb on - strandat 2409.375 kb on - strandat 2410.496 kb on - strand, within Sama_1982at 2410.496 kb on - strand, within Sama_1982at 2410.535 kb on - strand, within Sama_1982at 2410.537 kb on + strand, within Sama_1982at 2410.753 kb on - strand, within Sama_1982at 2411.321 kb on - strandat 2411.321 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
2,409,349 - +0.8
2,409,375 - -1.2
2,409,375 - -1.2
2,410,496 - Sama_1982 0.17 -0.7
2,410,496 - Sama_1982 0.17 +2.0
2,410,535 - Sama_1982 0.21 +0.0
2,410,537 + Sama_1982 0.21 -0.3
2,410,753 - Sama_1982 0.44 +1.0
2,411,321 - +3.0
2,411,321 - +2.5

Or see this region's nucleotide sequence