Strain Fitness in Shewanella amazonensis SB2B around Sama_1880

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
2,295,090	+		Sama_1879	0.28	-0.9
2,295,091	-		Sama_1879	0.28	-0.2
2,295,094	+		Sama_1879	0.28	+0.6
2,295,250	+		Sama_1879	0.40	+0.7
2,295,251	-		Sama_1879	0.40	-1.2
2,295,256	-		Sama_1879	0.41	+2.2
2,295,286	+		Sama_1879	0.43	+1.7
2,295,286	+		Sama_1879	0.43	+0.9
2,295,378	+		Sama_1879	0.50	-0.7
2,295,463	+		Sama_1879	0.56	+0.3
2,295,464	-		Sama_1879	0.56	+0.7
2,295,465	+		Sama_1879	0.56	-0.9
2,295,466	-		Sama_1879	0.57	-0.1
2,295,553	-		Sama_1879	0.63	+0.3
2,295,553	-		Sama_1879	0.63	+1.2
2,295,651	-		Sama_1879	0.71	+0.3
2,295,651	-		Sama_1879	0.71	-0.2
2,295,667	+		Sama_1879	0.72	+1.3
2,295,668	-		Sama_1879	0.72	+1.2
2,295,668	-		Sama_1879	0.72	+0.2
2,295,671	+		Sama_1879	0.72	+0.0
2,295,671	+		Sama_1879	0.72	+1.6
2,295,672	-		Sama_1879	0.72	+0.8
2,295,672	-		Sama_1879	0.72	+1.2
2,295,805	-		Sama_1879	0.82	+1.1
2,295,853	-		Sama_1879	0.86	+0.1
2,295,866	-		Sama_1879	0.87	-1.3
2,295,889	+		Sama_1879	0.89	+0.9
2,295,889	+		Sama_1879	0.89	+2.1
2,295,889	+		Sama_1879	0.89	+0.8
2,295,890	-		Sama_1879	0.89	-0.7
2,295,890	-		Sama_1879	0.89	+0.7
2,295,890	-		Sama_1879	0.89	-0.6
2,295,993	-				+0.6
2,295,993	-				+0.3
2,296,750	-				-2.8
2,296,750	-				+0.9
2,296,754	-				-1.1
2,296,767	-				-0.7
2,296,785	-				-1.4
2,296,786	+				+0.2
2,296,787	-				-1.4
2,296,806	+				-2.1
2,296,807	-				-1.9
2,296,811	+				+0.3
2,296,845	-				-1.6
2,296,849	-				-2.9
2,296,909	-	rnhA	Sama_1881	0.19	-2.4
2,296,909	-	rnhA	Sama_1881	0.19	-2.4
2,296,909	-	rnhA	Sama_1881	0.19	-2.2
2,296,909	-	rnhA	Sama_1881	0.19	-2.0
2,296,910	+	rnhA	Sama_1881	0.19	-2.4
2,296,964	+	rnhA	Sama_1881	0.30	-2.9
2,296,985	-	rnhA	Sama_1881	0.35	-1.7
2,297,003	+	rnhA	Sama_1881	0.39	-3.0
2,297,043	+	rnhA	Sama_1881	0.47	-1.1
2,297,043	+	rnhA	Sama_1881	0.47	-2.9
2,297,044	-	rnhA	Sama_1881	0.47	-1.4
2,297,044	-	rnhA	Sama_1881	0.47	-3.2
2,297,045	+	rnhA	Sama_1881	0.48	-3.0
2,297,045	+	rnhA	Sama_1881	0.48	-1.1
2,297,045	+	rnhA	Sama_1881	0.48	-1.6
2,297,046	-	rnhA	Sama_1881	0.48	-0.5
2,297,280	+				-1.0
2,297,335	-				-0.2
2,297,641	+		Sama_1882	0.34	-0.3
2,297,671	-		Sama_1882	0.37	+0.7
2,297,671	-		Sama_1882	0.37	+0.7