Strain Fitness in Shewanella amazonensis SB2B around Sama_1607

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
1,963,832	-				-0.8
1,963,876	+				-3.1
1,963,910	+				-0.0
1,963,910	+				-0.2
1,963,911	-				-0.7
1,964,042	+				-0.7
1,964,042	+				-0.3
1,964,042	+				+0.6
1,964,083	-				-0.3
1,964,128	+				-1.6
1,964,178	-				+0.7
1,964,200	-				-0.5
1,964,283	+				-0.0
1,964,299	-				-0.4
1,964,303	+				+0.1
1,964,303	+				+1.0
1,964,303	+				-1.7
1,964,304	-				-0.9
1,964,491	+				+0.2
1,964,491	+				+1.0
1,964,491	+				+0.3
1,964,491	+				+0.4
1,964,494	+				+0.2
1,964,494	+				+0.7
1,964,551	+				-0.8
1,964,561	+				+1.0
1,964,562	-				-1.3
1,964,585	-				-1.7
1,964,587	-				-1.1
1,964,596	+				+1.2
1,964,596	+				+1.1
1,964,596	+				-1.0
1,964,596	+				+1.8
1,964,596	+				-0.7
1,964,596	+				+1.6
1,964,596	+				-0.0
1,964,596	+				+0.6
1,964,596	+				-0.1
1,964,596	+				+0.2
1,964,596	+				-0.0
1,964,596	+				+1.1
1,964,597	-				-0.3
1,964,597	-				-0.6
1,964,600	+				+0.4
1,964,600	+				-0.3
1,964,600	+				+0.7
1,964,600	+				-0.3
1,964,600	+				+1.3
1,964,601	-				-1.2
1,964,601	-				-0.0
1,964,646	-				+0.4
1,964,655	+				+0.4
1,964,655	+				+0.3
1,964,655	+				-0.2
1,964,707	+				-3.0
1,964,707	+				+1.0
1,964,708	-				-1.3
1,964,708	-				+0.3
1,964,709	+				-2.7
1,964,756	+				-2.5
1,964,756	+				-2.0
1,964,757	-				-1.8
1,964,757	-				-2.6
1,964,757	-				-1.0
1,964,757	-				-1.8
1,964,760	+				-1.0
1,964,760	+				-1.7
1,964,761	-				-0.6
1,964,772	+				-1.8
1,964,800	+				-1.6
1,964,800	+				-1.8
1,964,800	+				-2.8
1,964,800	+				-3.3
1,964,800	+				+0.4
1,964,802	+				-3.3
1,964,957	+		Sama_1607	0.26	-1.8
1,964,957	+		Sama_1607	0.26	-1.6
1,964,957	+		Sama_1607	0.26	-0.0
1,964,957	+		Sama_1607	0.26	-3.3
1,964,990	+		Sama_1607	0.31	-1.0
1,965,023	+		Sama_1607	0.36	-2.6
1,965,023	+		Sama_1607	0.36	-3.5
1,965,023	+		Sama_1607	0.36	-3.5
1,965,023	+		Sama_1607	0.36	-2.1
1,965,023	+		Sama_1607	0.36	-3.5
1,965,023	+		Sama_1607	0.36	-0.9
1,965,024	-		Sama_1607	0.36	-1.0
1,965,024	-		Sama_1607	0.36	-1.3
1,965,024	-		Sama_1607	0.36	-1.6
1,965,090	+		Sama_1607	0.47	-2.8
1,965,159	+		Sama_1607	0.57	-1.3
1,965,235	+		Sama_1607	0.69	-1.3
1,965,336	+		Sama_1607	0.85	-2.2
1,965,336	+		Sama_1607	0.85	+0.4
1,965,336	+		Sama_1607	0.85	-0.2
1,965,336	+		Sama_1607	0.85	-3.2
1,965,349	+		Sama_1607	0.87	-2.7
1,965,349	+		Sama_1607	0.87	-2.0
1,965,350	-		Sama_1607	0.87	-3.4
1,965,361	+		Sama_1607	0.89	-1.6
1,965,362	-		Sama_1607	0.89	-2.2
1,965,362	-		Sama_1607	0.89	+0.4
1,965,407	+				-1.0
1,965,407	+				-1.0
1,965,407	+				-1.3
1,965,407	+				-1.9
1,965,407	+				-2.6
1,965,408	-				-2.3
1,965,413	+				-3.3
1,965,413	+				-2.3
1,965,413	+				-0.6
1,965,414	-				+1.0
1,965,414	-				-1.6
1,965,449	-				+1.7
1,965,497	+				-2.0
1,965,497	+				-0.3
1,965,497	+				-0.1
1,965,517	+				-0.4
1,965,517	+				-0.4
1,965,521	+				-0.7
1,965,521	+				-0.6
1,965,521	+				-0.3
1,965,521	+				-0.3
1,965,522	-				-2.0
1,965,522	-				-1.8
1,965,525	+				-1.6
1,965,586	+				-1.8
1,965,661	-	uvrC	Sama_1608	0.12	-0.4
1,965,661	-	uvrC	Sama_1608	0.12	-1.0
1,965,678	-	uvrC	Sama_1608	0.13	-0.0
1,965,689	+	uvrC	Sama_1608	0.14	-0.2
1,965,689	+	uvrC	Sama_1608	0.14	-2.0
1,965,701	+	uvrC	Sama_1608	0.14	+1.2
1,965,701	+	uvrC	Sama_1608	0.14	-0.3
1,965,701	+	uvrC	Sama_1608	0.14	+0.5
1,965,701	+	uvrC	Sama_1608	0.14	+1.0
1,965,702	-	uvrC	Sama_1608	0.15	-2.3
1,965,724	+	uvrC	Sama_1608	0.16	-1.6
1,965,724	+	uvrC	Sama_1608	0.16	+0.2
1,965,724	+	uvrC	Sama_1608	0.16	-0.4
1,965,725	-	uvrC	Sama_1608	0.16	-1.1
1,965,739	+	uvrC	Sama_1608	0.17	-2.2
1,965,740	-	uvrC	Sama_1608	0.17	-1.7
1,965,758	-	uvrC	Sama_1608	0.18	+1.3
1,965,810	-	uvrC	Sama_1608	0.20	-1.8
1,965,899	+	uvrC	Sama_1608	0.25	-2.6
1,965,902	+	uvrC	Sama_1608	0.26	-1.3
1,965,986	+	uvrC	Sama_1608	0.30	+0.6
1,965,986	+	uvrC	Sama_1608	0.30	+0.1
1,965,986	+	uvrC	Sama_1608	0.30	+0.4
1,965,986	+	uvrC	Sama_1608	0.30	-1.3
1,966,092	-	uvrC	Sama_1608	0.36	-1.6
1,966,199	+	uvrC	Sama_1608	0.42	-0.1
1,966,269	-	uvrC	Sama_1608	0.46	-0.6
1,966,311	+	uvrC	Sama_1608	0.48	+0.2
1,966,311	+	uvrC	Sama_1608	0.48	-1.0
1,966,311	+	uvrC	Sama_1608	0.48	-0.3
1,966,334	+	uvrC	Sama_1608	0.49	-1.8
1,966,378	-	uvrC	Sama_1608	0.52	-0.0