Strain Fitness in Shewanella amazonensis SB2B around Sama_1315
Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Bacitracin 0.25 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,598,367 | - | Sama_1314 | 0.26 | +0.5 | |
1,598,367 | - | Sama_1314 | 0.26 | +0.4 | |
1,598,403 | + | Sama_1314 | 0.31 | +0.2 | |
1,598,503 | - | Sama_1314 | 0.42 | -0.2 | |
1,598,563 | + | Sama_1314 | 0.49 | -0.8 | |
1,598,563 | + | Sama_1314 | 0.49 | +1.2 | |
1,598,564 | - | Sama_1314 | 0.49 | -0.1 | |
1,598,564 | - | Sama_1314 | 0.49 | -2.7 | |
1,598,650 | + | Sama_1314 | 0.59 | +0.7 | |
1,598,702 | + | Sama_1314 | 0.65 | -1.2 | |
1,598,702 | + | Sama_1314 | 0.65 | -0.9 | |
1,598,702 | + | Sama_1314 | 0.65 | +0.6 | |
1,598,917 | - | Sama_1314 | 0.89 | -0.1 | |
1,598,929 | + | +0.7 | |||
1,598,965 | + | +0.2 | |||
1,599,030 | + | +0.2 | |||
1,599,058 | - | -0.0 | |||
1,599,080 | + | +3.6 | |||
1,599,817 | + | +1.4 | |||
1,599,862 | + | -2.2 | |||
1,599,862 | + | -0.8 |
Or see this region's nucleotide sequence