Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1061 and Sama_1062 are separated by 37 nucleotides Sama_1062 and Sama_1063 are separated by 41 nucleotides
Sama_1061: Sama_1061 - hypothetical protein (RefSeq), at 1,284,363 to 1,286,669
_1061
Sama_1062: Sama_1062 - GGDEF domain-containing protein (RefSeq), at 1,286,707 to 1,288,023
_1062
Sama_1063: Sama_1063 - phosphoribosylaminoimidazole carboxylase ATPase subunit (RefSeq), at 1,288,065 to 1,289,150
_1063
Position (kb)
1286
1287
1288
1289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1285.742 kb on - strand, within Sama_1061 at 1285.742 kb on - strand, within Sama_1061 at 1285.742 kb on - strand, within Sama_1061 at 1285.777 kb on + strand, within Sama_1061 at 1285.778 kb on - strand, within Sama_1061 at 1285.778 kb on - strand, within Sama_1061 at 1285.778 kb on - strand, within Sama_1061 at 1285.778 kb on - strand, within Sama_1061 at 1285.780 kb on + strand, within Sama_1061 at 1285.780 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.810 kb on + strand, within Sama_1061 at 1285.811 kb on - strand, within Sama_1061 at 1285.811 kb on - strand, within Sama_1061 at 1285.813 kb on + strand, within Sama_1061 at 1285.919 kb on - strand, within Sama_1061 at 1285.919 kb on - strand, within Sama_1061 at 1285.919 kb on - strand, within Sama_1061 at 1285.919 kb on - strand, within Sama_1061 at 1285.919 kb on - strand, within Sama_1061 at 1285.957 kb on + strand, within Sama_1061 at 1285.957 kb on + strand, within Sama_1061 at 1285.958 kb on - strand, within Sama_1061 at 1285.974 kb on - strand, within Sama_1061 at 1285.974 kb on - strand, within Sama_1061 at 1286.033 kb on - strand, within Sama_1061 at 1286.033 kb on - strand, within Sama_1061 at 1286.033 kb on - strand, within Sama_1061 at 1286.043 kb on + strand, within Sama_1061 at 1286.043 kb on + strand, within Sama_1061 at 1286.043 kb on + strand, within Sama_1061 at 1286.065 kb on + strand, within Sama_1061 at 1286.066 kb on - strand, within Sama_1061 at 1286.066 kb on - strand, within Sama_1061 at 1286.066 kb on - strand, within Sama_1061 at 1286.066 kb on - strand, within Sama_1061 at 1286.066 kb on - strand, within Sama_1061 at 1286.068 kb on + strand, within Sama_1061 at 1286.068 kb on + strand, within Sama_1061 at 1286.068 kb on + strand, within Sama_1061 at 1286.069 kb on - strand, within Sama_1061 at 1286.075 kb on + strand, within Sama_1061 at 1286.076 kb on - strand, within Sama_1061 at 1286.378 kb on + strand, within Sama_1061 at 1286.385 kb on + strand, within Sama_1061 at 1286.386 kb on - strand, within Sama_1061 at 1286.387 kb on + strand, within Sama_1061 at 1286.388 kb on - strand, within Sama_1061 at 1286.388 kb on - strand, within Sama_1061 at 1286.422 kb on + strand, within Sama_1061 at 1286.422 kb on + strand, within Sama_1061 at 1286.423 kb on - strand, within Sama_1061 at 1286.423 kb on - strand, within Sama_1061 at 1286.423 kb on - strand, within Sama_1061 at 1286.423 kb on - strand, within Sama_1061 at 1286.425 kb on + strand, within Sama_1061 at 1286.425 kb on + strand, within Sama_1061 at 1286.425 kb on + strand, within Sama_1061 at 1286.425 kb on + strand, within Sama_1061 at 1286.425 kb on + strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.426 kb on - strand, within Sama_1061 at 1286.665 kb on + strand at 1286.665 kb on + strand at 1286.665 kb on + strand at 1286.666 kb on - strand at 1286.666 kb on - strand at 1286.666 kb on - strand at 1286.666 kb on - strand at 1286.666 kb on - strand at 1286.671 kb on + strand at 1286.671 kb on + strand at 1286.671 kb on + strand at 1286.671 kb on + strand at 1286.671 kb on + strand at 1286.672 kb on - strand at 1286.672 kb on - strand at 1286.672 kb on - strand at 1286.672 kb on - strand at 1286.672 kb on - strand at 1286.686 kb on + strand at 1286.686 kb on + strand at 1286.697 kb on + strand at 1286.698 kb on - strand at 1286.722 kb on - strand at 1286.722 kb on - strand at 1286.728 kb on + strand at 1286.729 kb on - strand at 1286.729 kb on - strand at 1286.756 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.760 kb on + strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.761 kb on - strand at 1286.911 kb on + strand, within Sama_1062 at 1286.911 kb on + strand, within Sama_1062 at 1286.911 kb on + strand, within Sama_1062 at 1286.912 kb on - strand, within Sama_1062 at 1286.912 kb on - strand, within Sama_1062 at 1286.912 kb on - strand, within Sama_1062 at 1286.912 kb on - strand, within Sama_1062 at 1286.971 kb on + strand, within Sama_1062 at 1286.971 kb on + strand, within Sama_1062 at 1287.068 kb on + strand, within Sama_1062 at 1287.069 kb on - strand, within Sama_1062 at 1287.069 kb on - strand, within Sama_1062 at 1287.069 kb on - strand, within Sama_1062 at 1287.116 kb on + strand, within Sama_1062 at 1287.116 kb on + strand, within Sama_1062 at 1287.117 kb on - strand, within Sama_1062 at 1287.126 kb on + strand, within Sama_1062 at 1287.185 kb on + strand, within Sama_1062 at 1287.234 kb on + strand, within Sama_1062 at 1287.242 kb on + strand, within Sama_1062 at 1287.243 kb on - strand, within Sama_1062 at 1287.328 kb on - strand, within Sama_1062 at 1287.355 kb on - strand, within Sama_1062 at 1287.403 kb on - strand, within Sama_1062 at 1287.411 kb on + strand, within Sama_1062 at 1287.412 kb on - strand, within Sama_1062 at 1287.412 kb on - strand, within Sama_1062 at 1287.433 kb on - strand, within Sama_1062 at 1287.488 kb on - strand, within Sama_1062 at 1287.517 kb on + strand, within Sama_1062 at 1287.517 kb on + strand, within Sama_1062 at 1287.540 kb on + strand, within Sama_1062 at 1287.567 kb on + strand, within Sama_1062 at 1287.567 kb on + strand, within Sama_1062 at 1287.568 kb on - strand, within Sama_1062 at 1287.744 kb on - strand, within Sama_1062 at 1287.746 kb on + strand, within Sama_1062 at 1287.746 kb on + strand, within Sama_1062 at 1287.747 kb on - strand, within Sama_1062 at 1287.759 kb on - strand, within Sama_1062 at 1287.770 kb on + strand, within Sama_1062 at 1287.770 kb on + strand, within Sama_1062 at 1287.770 kb on + strand, within Sama_1062 at 1287.771 kb on - strand, within Sama_1062 at 1287.790 kb on + strand, within Sama_1062 at 1287.830 kb on + strand, within Sama_1062 at 1287.830 kb on + strand, within Sama_1062 at 1287.830 kb on + strand, within Sama_1062 at 1287.869 kb on - strand, within Sama_1062 at 1287.937 kb on + strand at 1287.972 kb on + strand at 1287.972 kb on + strand at 1287.973 kb on - strand at 1287.974 kb on + strand at 1287.974 kb on + strand at 1287.975 kb on - strand at 1287.975 kb on - strand at 1288.066 kb on + strand at 1288.066 kb on + strand at 1288.108 kb on + strand at 1288.109 kb on - strand at 1288.130 kb on + strand at 1288.131 kb on - strand at 1288.157 kb on + strand at 1288.222 kb on + strand, within Sama_1063 at 1288.308 kb on + strand, within Sama_1063 at 1288.308 kb on + strand, within Sama_1063 at 1288.309 kb on - strand, within Sama_1063 at 1288.309 kb on - strand, within Sama_1063 at 1288.353 kb on + strand, within Sama_1063 at 1288.354 kb on - strand, within Sama_1063 at 1288.370 kb on + strand, within Sama_1063 at 1288.371 kb on - strand, within Sama_1063 at 1288.403 kb on + strand, within Sama_1063 at 1288.403 kb on + strand, within Sama_1063 at 1288.403 kb on + strand, within Sama_1063 at 1288.404 kb on - strand, within Sama_1063 at 1288.404 kb on - strand, within Sama_1063 at 1288.404 kb on - strand, within Sama_1063 at 1288.404 kb on - strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.480 kb on + strand, within Sama_1063 at 1288.481 kb on - strand, within Sama_1063 at 1288.481 kb on - strand, within Sama_1063 at 1288.481 kb on - strand, within Sama_1063 at 1288.481 kb on - strand, within Sama_1063 at 1288.481 kb on - strand, within Sama_1063 at 1288.481 kb on - strand, within Sama_1063 at 1288.484 kb on + strand, within Sama_1063 at 1288.484 kb on + strand, within Sama_1063 at 1288.484 kb on + strand, within Sama_1063 at 1288.484 kb on + strand, within Sama_1063 at 1288.484 kb on + strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.485 kb on - strand, within Sama_1063 at 1288.798 kb on + strand, within Sama_1063 at 1288.798 kb on + strand, within Sama_1063 at 1288.798 kb on + strand, within Sama_1063 at 1288.808 kb on - strand, within Sama_1063 at 1288.808 kb on - strand, within Sama_1063 at 1288.865 kb on + strand, within Sama_1063 at 1288.865 kb on + strand, within Sama_1063 at 1288.866 kb on - strand, within Sama_1063 at 1288.866 kb on - strand, within Sama_1063 at 1288.866 kb on - strand, within Sama_1063 at 1288.866 kb on - strand, within Sama_1063 at 1288.894 kb on + strand, within Sama_1063
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,285,742 - Sama_1061 0.60 -0.0 1,285,742 - Sama_1061 0.60 +0.9 1,285,742 - Sama_1061 0.60 -0.6 1,285,777 + Sama_1061 0.61 -2.4 1,285,778 - Sama_1061 0.61 -1.7 1,285,778 - Sama_1061 0.61 -1.3 1,285,778 - Sama_1061 0.61 -2.4 1,285,778 - Sama_1061 0.61 -0.3 1,285,780 + Sama_1061 0.61 -1.2 1,285,780 + Sama_1061 0.61 +0.5 1,285,810 + Sama_1061 0.63 -0.8 1,285,810 + Sama_1061 0.63 -0.4 1,285,810 + Sama_1061 0.63 -2.0 1,285,810 + Sama_1061 0.63 -0.7 1,285,810 + Sama_1061 0.63 +0.9 1,285,810 + Sama_1061 0.63 +1.5 1,285,810 + Sama_1061 0.63 +0.1 1,285,811 - Sama_1061 0.63 -0.2 1,285,811 - Sama_1061 0.63 +2.1 1,285,813 + Sama_1061 0.63 +1.4 1,285,919 - Sama_1061 0.67 +0.6 1,285,919 - Sama_1061 0.67 +0.8 1,285,919 - Sama_1061 0.67 +0.7 1,285,919 - Sama_1061 0.67 -0.2 1,285,919 - Sama_1061 0.67 -0.0 1,285,957 + Sama_1061 0.69 -0.2 1,285,957 + Sama_1061 0.69 -2.0 1,285,958 - Sama_1061 0.69 -0.8 1,285,974 - Sama_1061 0.70 -0.2 1,285,974 - Sama_1061 0.70 -0.7 1,286,033 - Sama_1061 0.72 -1.3 1,286,033 - Sama_1061 0.72 +0.3 1,286,033 - Sama_1061 0.72 -1.0 1,286,043 + Sama_1061 0.73 +0.3 1,286,043 + Sama_1061 0.73 +0.8 1,286,043 + Sama_1061 0.73 +0.1 1,286,065 + Sama_1061 0.74 +0.7 1,286,066 - Sama_1061 0.74 +0.3 1,286,066 - Sama_1061 0.74 +0.6 1,286,066 - Sama_1061 0.74 -0.5 1,286,066 - Sama_1061 0.74 -1.0 1,286,066 - Sama_1061 0.74 +0.6 1,286,068 + Sama_1061 0.74 +0.1 1,286,068 + Sama_1061 0.74 +0.6 1,286,068 + Sama_1061 0.74 -1.2 1,286,069 - Sama_1061 0.74 +0.1 1,286,075 + Sama_1061 0.74 -0.4 1,286,076 - Sama_1061 0.74 -0.1 1,286,378 + Sama_1061 0.87 -1.2 1,286,385 + Sama_1061 0.88 -0.1 1,286,386 - Sama_1061 0.88 -1.1 1,286,387 + Sama_1061 0.88 +1.0 1,286,388 - Sama_1061 0.88 +0.3 1,286,388 - Sama_1061 0.88 -1.6 1,286,422 + Sama_1061 0.89 +0.3 1,286,422 + Sama_1061 0.89 -1.4 1,286,423 - Sama_1061 0.89 +0.8 1,286,423 - Sama_1061 0.89 +0.3 1,286,423 - Sama_1061 0.89 -0.4 1,286,423 - Sama_1061 0.89 -0.2 1,286,425 + Sama_1061 0.89 +0.5 1,286,425 + Sama_1061 0.89 -0.4 1,286,425 + Sama_1061 0.89 +0.4 1,286,425 + Sama_1061 0.89 +1.1 1,286,425 + Sama_1061 0.89 +0.1 1,286,426 - Sama_1061 0.89 -1.2 1,286,426 - Sama_1061 0.89 -0.5 1,286,426 - Sama_1061 0.89 -0.5 1,286,426 - Sama_1061 0.89 +0.7 1,286,426 - Sama_1061 0.89 -1.7 1,286,426 - Sama_1061 0.89 -0.5 1,286,426 - Sama_1061 0.89 +0.4 1,286,426 - Sama_1061 0.89 +0.7 1,286,426 - Sama_1061 0.89 +0.1 1,286,426 - Sama_1061 0.89 -2.0 1,286,426 - Sama_1061 0.89 -0.7 1,286,426 - Sama_1061 0.89 -0.7 1,286,665 + +0.2 1,286,665 + +1.0 1,286,665 + +0.8 1,286,666 - +0.9 1,286,666 - -2.8 1,286,666 - -0.8 1,286,666 - +1.4 1,286,666 - -0.5 1,286,671 + -0.5 1,286,671 + +0.9 1,286,671 + +0.1 1,286,671 + +1.1 1,286,671 + -0.9 1,286,672 - -0.2 1,286,672 - -0.3 1,286,672 - -0.4 1,286,672 - -0.5 1,286,672 - +1.3 1,286,686 + +0.5 1,286,686 + +0.6 1,286,697 + -1.2 1,286,698 - -0.7 1,286,722 - -1.3 1,286,722 - -0.1 1,286,728 + +0.7 1,286,729 - +1.4 1,286,729 - +0.6 1,286,756 + +2.5 1,286,760 + +2.4 1,286,760 + +2.2 1,286,760 + +0.6 1,286,760 + +2.3 1,286,760 + +2.0 1,286,760 + +1.5 1,286,760 + +2.1 1,286,760 + +1.5 1,286,760 + +2.4 1,286,760 + +1.7 1,286,760 + +1.0 1,286,761 - +0.1 1,286,761 - +2.1 1,286,761 - +0.4 1,286,761 - +1.9 1,286,761 - +2.8 1,286,761 - +0.6 1,286,761 - +1.9 1,286,761 - +0.4 1,286,761 - +1.6 1,286,761 - +1.8 1,286,911 + Sama_1062 0.15 +0.3 1,286,911 + Sama_1062 0.15 +1.4 1,286,911 + Sama_1062 0.15 +1.7 1,286,912 - Sama_1062 0.16 +1.4 1,286,912 - Sama_1062 0.16 +2.1 1,286,912 - Sama_1062 0.16 +2.3 1,286,912 - Sama_1062 0.16 +1.8 1,286,971 + Sama_1062 0.20 +2.7 1,286,971 + Sama_1062 0.20 +2.0 1,287,068 + Sama_1062 0.27 +2.0 1,287,069 - Sama_1062 0.27 +0.2 1,287,069 - Sama_1062 0.27 +0.9 1,287,069 - Sama_1062 0.27 +1.4 1,287,116 + Sama_1062 0.31 +1.3 1,287,116 + Sama_1062 0.31 +1.9 1,287,117 - Sama_1062 0.31 -0.1 1,287,126 + Sama_1062 0.32 +1.4 1,287,185 + Sama_1062 0.36 -2.2 1,287,234 + Sama_1062 0.40 +1.5 1,287,242 + Sama_1062 0.41 +2.9 1,287,243 - Sama_1062 0.41 +0.3 1,287,328 - Sama_1062 0.47 +0.7 1,287,355 - Sama_1062 0.49 +1.9 1,287,403 - Sama_1062 0.53 +2.7 1,287,411 + Sama_1062 0.53 +1.5 1,287,412 - Sama_1062 0.54 +3.3 1,287,412 - Sama_1062 0.54 +1.4 1,287,433 - Sama_1062 0.55 +3.5 1,287,488 - Sama_1062 0.59 +0.8 1,287,517 + Sama_1062 0.62 +3.0 1,287,517 + Sama_1062 0.62 +2.3 1,287,540 + Sama_1062 0.63 +2.1 1,287,567 + Sama_1062 0.65 +0.5 1,287,567 + Sama_1062 0.65 +0.1 1,287,568 - Sama_1062 0.65 +2.5 1,287,744 - Sama_1062 0.79 +2.8 1,287,746 + Sama_1062 0.79 +2.9 1,287,746 + Sama_1062 0.79 +1.7 1,287,747 - Sama_1062 0.79 +1.5 1,287,759 - Sama_1062 0.80 +1.3 1,287,770 + Sama_1062 0.81 +1.7 1,287,770 + Sama_1062 0.81 +2.7 1,287,770 + Sama_1062 0.81 +4.2 1,287,771 - Sama_1062 0.81 +2.0 1,287,790 + Sama_1062 0.82 +2.5 1,287,830 + Sama_1062 0.85 +2.2 1,287,830 + Sama_1062 0.85 +2.1 1,287,830 + Sama_1062 0.85 +2.5 1,287,869 - Sama_1062 0.88 +1.5 1,287,937 + +1.4 1,287,972 + +1.8 1,287,972 + +1.5 1,287,973 - +1.1 1,287,974 + +2.5 1,287,974 + +1.1 1,287,975 - +2.0 1,287,975 - -1.5 1,288,066 + +0.3 1,288,066 + -1.2 1,288,108 + +0.5 1,288,109 - -0.5 1,288,130 + +0.5 1,288,131 - -0.3 1,288,157 + -1.1 1,288,222 + Sama_1063 0.14 +1.9 1,288,308 + Sama_1063 0.22 +1.2 1,288,308 + Sama_1063 0.22 -1.0 1,288,309 - Sama_1063 0.22 +1.1 1,288,309 - Sama_1063 0.22 -2.0 1,288,353 + Sama_1063 0.27 +1.8 1,288,354 - Sama_1063 0.27 +1.9 1,288,370 + Sama_1063 0.28 +0.1 1,288,371 - Sama_1063 0.28 +1.4 1,288,403 + Sama_1063 0.31 -0.6 1,288,403 + Sama_1063 0.31 +1.5 1,288,403 + Sama_1063 0.31 +0.3 1,288,404 - Sama_1063 0.31 +0.8 1,288,404 - Sama_1063 0.31 +1.1 1,288,404 - Sama_1063 0.31 +1.1 1,288,404 - Sama_1063 0.31 -1.2 1,288,480 + Sama_1063 0.38 +1.1 1,288,480 + Sama_1063 0.38 +1.1 1,288,480 + Sama_1063 0.38 +0.7 1,288,480 + Sama_1063 0.38 -1.2 1,288,480 + Sama_1063 0.38 -0.7 1,288,480 + Sama_1063 0.38 +2.1 1,288,480 + Sama_1063 0.38 +0.0 1,288,481 - Sama_1063 0.38 +1.0 1,288,481 - Sama_1063 0.38 +1.1 1,288,481 - Sama_1063 0.38 -0.0 1,288,481 - Sama_1063 0.38 -0.5 1,288,481 - Sama_1063 0.38 -0.2 1,288,481 - Sama_1063 0.38 +0.8 1,288,484 + Sama_1063 0.39 +0.6 1,288,484 + Sama_1063 0.39 -0.1 1,288,484 + Sama_1063 0.39 -1.0 1,288,484 + Sama_1063 0.39 -0.5 1,288,484 + Sama_1063 0.39 -2.0 1,288,485 - Sama_1063 0.39 +1.1 1,288,485 - Sama_1063 0.39 -0.1 1,288,485 - Sama_1063 0.39 +1.4 1,288,485 - Sama_1063 0.39 +0.5 1,288,485 - Sama_1063 0.39 +0.1 1,288,485 - Sama_1063 0.39 +0.3 1,288,485 - Sama_1063 0.39 -0.5 1,288,798 + Sama_1063 0.67 +0.6 1,288,798 + Sama_1063 0.67 -0.1 1,288,798 + Sama_1063 0.67 -0.2 1,288,808 - Sama_1063 0.68 -0.4 1,288,808 - Sama_1063 0.68 -0.1 1,288,865 + Sama_1063 0.74 +0.3 1,288,865 + Sama_1063 0.74 +0.1 1,288,866 - Sama_1063 0.74 -0.0 1,288,866 - Sama_1063 0.74 +1.0 1,288,866 - Sama_1063 0.74 +0.4 1,288,866 - Sama_1063 0.74 -0.9 1,288,894 + Sama_1063 0.76 -0.1
Or see this region's nucleotide sequence