Strain Fitness in Shewanella amazonensis SB2B around Sama_1005

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
1,215,867	+		Sama_1004	0.46	-3.1
1,215,867	+		Sama_1004	0.46	-2.2
1,215,868	-		Sama_1004	0.46	-3.6
1,215,868	-		Sama_1004	0.46	-4.5
1,216,020	+		Sama_1004	0.57	+0.2
1,216,020	+		Sama_1004	0.57	-2.4
1,216,021	-		Sama_1004	0.57	-2.0
1,216,072	+		Sama_1004	0.61	-2.5
1,216,072	+		Sama_1004	0.61	-3.9
1,216,073	-		Sama_1004	0.61	-2.3
1,216,073	-		Sama_1004	0.61	-3.4
1,216,073	-		Sama_1004	0.61	-2.0
1,216,075	+		Sama_1004	0.61	-2.8
1,216,075	+		Sama_1004	0.61	-4.5
1,216,076	-		Sama_1004	0.61	-2.2
1,216,076	-		Sama_1004	0.61	-3.2
1,216,076	-		Sama_1004	0.61	-4.2
1,216,077	+		Sama_1004	0.61	-3.1
1,216,077	+		Sama_1004	0.61	-3.2
1,216,077	+		Sama_1004	0.61	+0.2
1,216,077	+		Sama_1004	0.61	-2.9
1,216,078	-		Sama_1004	0.61	-3.1
1,216,078	-		Sama_1004	0.61	-1.3
1,216,078	-		Sama_1004	0.61	-3.2
1,216,088	+		Sama_1004	0.62	-1.7
1,216,105	-		Sama_1004	0.63	-1.7
1,216,105	-		Sama_1004	0.63	-0.8
1,216,111	+		Sama_1004	0.63	-2.7
1,216,112	-		Sama_1004	0.64	-2.0
1,216,112	-		Sama_1004	0.64	-3.4
1,216,112	-		Sama_1004	0.64	-1.4
1,216,112	-		Sama_1004	0.64	-3.1
1,216,112	-		Sama_1004	0.64	-2.8
1,216,208	-		Sama_1004	0.70	-2.3
1,216,241	-		Sama_1004	0.73	-3.1
1,216,272	-		Sama_1004	0.75	-4.1
1,216,318	+		Sama_1004	0.78	-2.0
1,216,318	+		Sama_1004	0.78	+0.3
1,216,318	+		Sama_1004	0.78	-2.2
1,216,319	-		Sama_1004	0.78	-3.7
1,216,390	-		Sama_1004	0.83	-2.5
1,216,434	+		Sama_1004	0.87	-1.4
1,216,434	+		Sama_1004	0.87	-1.4
1,216,435	-		Sama_1004	0.87	-0.8
1,216,435	-		Sama_1004	0.87	-3.2
1,216,468	+		Sama_1004	0.89	-1.4
1,216,469	-		Sama_1004	0.89	-0.7
1,216,469	-		Sama_1004	0.89	-2.2
1,216,469	-		Sama_1004	0.89	-3.9
1,216,469	-		Sama_1004	0.89	-3.1
1,216,492	+				-3.7
1,216,493	-				-2.4
1,216,522	-				-3.2
1,216,522	-				+0.5
1,216,540	-				-2.5
1,216,557	+				-2.7
1,216,569	+				-2.0
1,216,570	-				-1.2
1,216,616	-				-2.8
1,216,616	-				-2.6
1,216,621	+				-3.4
1,216,622	-				-1.2
1,216,622	-				-3.3
1,216,622	-				-1.4
1,216,622	-				-1.2
1,216,622	-				-1.8
1,216,622	-				-1.3
1,216,622	-				-1.8
1,216,641	-				-0.1
1,216,641	-				-0.2
1,216,641	-				-0.2
1,216,641	-				+1.2
1,216,685	+				-1.4
1,216,686	-				+0.2
1,216,712	+				+0.6
1,216,712	+				-0.7
1,216,713	-				-0.1
1,216,735	+				+1.3
1,216,736	-				+0.2
1,216,740	+				-0.3
1,216,741	-				-0.2
1,216,741	-				+1.7
1,216,764	+				+0.1
1,216,764	+				-0.3
1,216,765	-				-0.4
1,216,765	-				-0.7
1,216,765	-				-1.3
1,216,772	+				-3.0
1,216,772	+				-0.9
1,216,772	+				-0.2
1,216,791	+				+0.2
1,216,791	+				-0.4
1,216,792	-				+0.2
1,216,792	-				-2.4
1,216,804	+				+0.4
1,216,804	+				-0.3
1,216,804	+				+0.3
1,216,804	+				-2.3
1,216,806	+				+0.0
1,216,806	+				-0.3
1,216,806	+				-0.2
1,216,806	+				-1.4
1,216,806	+				-1.2
1,216,806	+				+0.3
1,216,806	+				-0.8
1,216,806	+				+0.2
1,216,807	-				-0.6
1,216,807	-				-1.7
1,216,807	-				-0.8
1,216,818	-				+0.2
1,216,818	-				-0.9
1,216,821	+				-1.4
1,216,821	+				+0.6
1,216,821	+				+0.2
1,216,822	-				-0.3
1,216,935	-		Sama_1005	0.10	+0.2
1,216,995	-		Sama_1005	0.17	+0.8
1,217,030	+		Sama_1005	0.22	-0.4
1,217,030	+		Sama_1005	0.22	-1.9
1,217,052	+		Sama_1005	0.24	+2.2
1,217,053	-		Sama_1005	0.24	+1.3
1,217,054	+		Sama_1005	0.24	+2.4
1,217,156	+		Sama_1005	0.37	+0.4
1,217,156	+		Sama_1005	0.37	+0.5
1,217,204	+		Sama_1005	0.42	-0.8
1,217,204	+		Sama_1005	0.42	-0.4
1,217,205	-		Sama_1005	0.42	-0.4
1,217,205	-		Sama_1005	0.42	+0.4
1,217,205	-		Sama_1005	0.42	+0.4
1,217,248	+		Sama_1005	0.47	-1.1
1,217,248	+		Sama_1005	0.47	-0.4
1,217,249	-		Sama_1005	0.48	-1.4
1,217,250	+		Sama_1005	0.48	+1.2
1,217,250	+		Sama_1005	0.48	-2.2
1,217,250	+		Sama_1005	0.48	-0.6
1,217,250	+		Sama_1005	0.48	-0.7
1,217,250	+		Sama_1005	0.48	+0.6
1,217,250	+		Sama_1005	0.48	-0.1
1,217,250	+		Sama_1005	0.48	+1.0
1,217,250	+		Sama_1005	0.48	+0.7
1,217,250	+		Sama_1005	0.48	+0.0
1,217,250	+		Sama_1005	0.48	-0.4
1,217,251	-		Sama_1005	0.48	+0.1
1,217,251	-		Sama_1005	0.48	+0.3
1,217,251	-		Sama_1005	0.48	+1.7
1,217,251	-		Sama_1005	0.48	-2.1
1,217,251	-		Sama_1005	0.48	-0.1
1,217,251	-		Sama_1005	0.48	+1.0
1,217,283	+		Sama_1005	0.52	+1.4
1,217,284	-		Sama_1005	0.52	+0.7
1,217,311	+		Sama_1005	0.55	-1.0
1,217,318	+		Sama_1005	0.56	+1.0
1,217,319	-		Sama_1005	0.56	-0.5
1,217,319	-		Sama_1005	0.56	-0.8
1,217,377	+		Sama_1005	0.63	-0.8
1,217,377	+		Sama_1005	0.63	-1.8
1,217,378	-		Sama_1005	0.63	+0.3
1,217,496	+		Sama_1005	0.77	+0.6
1,217,517	+		Sama_1005	0.79	-0.5
1,217,517	+		Sama_1005	0.79	+0.0
1,217,517	+		Sama_1005	0.79	+0.4
1,217,517	+		Sama_1005	0.79	-0.2
1,217,518	-		Sama_1005	0.79	-0.1
1,217,547	+		Sama_1005	0.83	-2.4
1,217,548	-		Sama_1005	0.83	-0.3
1,217,596	+		Sama_1005	0.89	-0.7
1,217,596	+		Sama_1005	0.89	-2.2
1,217,597	-		Sama_1005	0.89	+0.2
1,217,661	+				-1.0
1,217,661	+				+1.7
1,217,661	+				-0.1
1,217,662	-				-2.5
1,217,662	-				-1.2
1,217,662	-				+0.3
1,217,662	-				+0.6
1,217,662	-				-1.9
1,217,682	+				-0.3
1,217,682	+				+0.6
1,217,683	-				-0.4
1,217,688	+				+0.9
1,217,689	-				-0.7
1,217,689	-				+0.3
1,217,738	-				+1.6
1,217,738	-				+1.2
1,217,748	+				-1.3
1,217,748	+				-0.8
1,217,749	-				+1.2
1,217,749	-				-0.3
1,217,749	-				+0.3
1,217,764	+				+0.6
1,217,772	-				+0.0
1,217,811	+				+1.2
1,217,812	-				-1.4
1,217,812	-				-1.4
1,217,812	-				-2.2
1,217,840	+				+0.2
1,217,852	-				-0.4
1,217,893	+				-0.1
1,217,894	-				-0.1
1,217,973	+		Sama_1006	0.13	+0.4
1,217,973	+		Sama_1006	0.13	+0.8
1,217,973	+		Sama_1006	0.13	+0.3
1,217,973	+		Sama_1006	0.13	-1.2
1,217,974	-		Sama_1006	0.13	-0.2
1,217,974	-		Sama_1006	0.13	-0.3
1,217,974	-		Sama_1006	0.13	+0.9
1,217,974	-		Sama_1006	0.13	+0.6
1,217,974	-		Sama_1006	0.13	-0.8
1,217,983	+		Sama_1006	0.14	-0.2
1,217,983	+		Sama_1006	0.14	+1.3
1,217,983	+		Sama_1006	0.14	-0.2
1,217,984	-		Sama_1006	0.14	-1.2
1,217,984	-		Sama_1006	0.14	-0.7
1,217,984	-		Sama_1006	0.14	-1.7
1,217,984	-		Sama_1006	0.14	+0.7
1,217,995	+		Sama_1006	0.15	-0.4
1,217,995	+		Sama_1006	0.15	+1.2
1,217,996	-		Sama_1006	0.15	-1.9
1,217,996	-		Sama_1006	0.15	+0.8
1,217,996	-		Sama_1006	0.15	+0.3
1,217,996	-		Sama_1006	0.15	-0.6
1,218,008	-		Sama_1006	0.16	-0.6
1,218,052	+		Sama_1006	0.19	-0.6
1,218,053	-		Sama_1006	0.19	-0.3
1,218,087	+		Sama_1006	0.21	-0.2
1,218,087	+		Sama_1006	0.21	+0.3
1,218,087	+		Sama_1006	0.21	-0.3
1,218,088	-		Sama_1006	0.21	-1.7
1,218,088	-		Sama_1006	0.21	-0.3
1,218,088	-		Sama_1006	0.21	+0.7
1,218,088	-		Sama_1006	0.21	-0.7
1,218,091	-		Sama_1006	0.21	-1.0
1,218,091	-		Sama_1006	0.21	-1.5
1,218,091	-		Sama_1006	0.21	-0.7
1,218,091	-		Sama_1006	0.21	-1.5
1,218,093	+		Sama_1006	0.21	+1.9
1,218,093	+		Sama_1006	0.21	-0.7
1,218,093	+		Sama_1006	0.21	+0.2
1,218,093	+		Sama_1006	0.21	+0.2
1,218,093	+		Sama_1006	0.21	+0.3
1,218,093	+		Sama_1006	0.21	+0.1
1,218,093	+		Sama_1006	0.21	-1.4
1,218,093	+		Sama_1006	0.21	+0.2
1,218,093	+		Sama_1006	0.21	+0.8
1,218,094	-		Sama_1006	0.21	+0.3
1,218,094	-		Sama_1006	0.21	+1.9
1,218,094	-		Sama_1006	0.21	-0.1
1,218,118	-		Sama_1006	0.23	-1.8
1,218,118	-		Sama_1006	0.23	+0.6
1,218,162	+		Sama_1006	0.26	+1.3
1,218,162	+		Sama_1006	0.26	-0.7
1,218,163	-		Sama_1006	0.26	-0.2
1,218,163	-		Sama_1006	0.26	+0.9
1,218,177	+		Sama_1006	0.27	-0.5
1,218,177	+		Sama_1006	0.27	-0.1
1,218,240	-		Sama_1006	0.31	-1.0
1,218,280	+		Sama_1006	0.34	+0.3
1,218,281	-		Sama_1006	0.34	+0.3
1,218,307	+		Sama_1006	0.36	-2.4
1,218,308	-		Sama_1006	0.36	-1.7
1,218,336	+		Sama_1006	0.38	-0.4
1,218,337	-		Sama_1006	0.38	+0.2
1,218,337	-		Sama_1006	0.38	-1.8
1,218,347	+		Sama_1006	0.38	-0.1
1,218,348	-		Sama_1006	0.38	-3.1
1,218,412	+		Sama_1006	0.43	-0.8
1,218,412	+		Sama_1006	0.43	-1.1
1,218,412	+		Sama_1006	0.43	-1.7
1,218,413	-		Sama_1006	0.43	-1.3
1,218,413	-		Sama_1006	0.43	+0.3
1,218,413	-		Sama_1006	0.43	+0.3
1,218,413	-		Sama_1006	0.43	+0.3
1,218,413	-		Sama_1006	0.43	+0.0
1,218,413	-		Sama_1006	0.43	+0.2
1,218,436	+		Sama_1006	0.44	-0.4
1,218,436	+		Sama_1006	0.44	-0.8
1,218,436	+		Sama_1006	0.44	-1.0
1,218,436	+		Sama_1006	0.44	-0.3
1,218,436	+		Sama_1006	0.44	+1.1
1,218,436	+		Sama_1006	0.44	+0.7
1,218,437	-		Sama_1006	0.44	-0.8
1,218,437	-		Sama_1006	0.44	-1.0
1,218,437	-		Sama_1006	0.44	+0.7
1,218,437	-		Sama_1006	0.44	-0.2
1,218,437	-		Sama_1006	0.44	-0.6
1,218,449	+		Sama_1006	0.45	+0.6
1,218,523	+		Sama_1006	0.50	+0.9
1,218,533	+		Sama_1006	0.51	+2.5
1,218,534	-		Sama_1006	0.51	-0.6
1,218,542	+		Sama_1006	0.52	-0.1
1,218,542	+		Sama_1006	0.52	+0.7
1,218,542	+		Sama_1006	0.52	+1.2
1,218,542	+		Sama_1006	0.52	-2.2
1,218,543	-		Sama_1006	0.52	-0.4
1,218,543	-		Sama_1006	0.52	+1.4
1,218,543	-		Sama_1006	0.52	+1.2
1,218,595	+		Sama_1006	0.55	+0.4
1,218,628	-		Sama_1006	0.57	-1.0
1,218,659	+		Sama_1006	0.59	-1.1
1,218,659	+		Sama_1006	0.59	+1.2