Strain Fitness in Shewanella amazonensis SB2B around Sama_0912

Experiment: Bacitracin 0.25 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.25 mg/ml
1,100,463	+				-1.2
1,100,464	-				+0.4
1,100,496	+				-0.1
1,100,496	+				-0.9
1,100,497	-				+0.6
1,100,537	+		Sama_0910	0.14	-0.1
1,100,538	-		Sama_0910	0.14	-1.1
1,100,590	+		Sama_0910	0.23	+3.0
1,100,590	+		Sama_0910	0.23	-0.9
1,100,590	+		Sama_0910	0.23	-1.6
1,100,590	+		Sama_0910	0.23	+0.7
1,100,590	+		Sama_0910	0.23	+0.5
1,100,591	-		Sama_0910	0.24	-0.9
1,100,592	+		Sama_0910	0.24	-0.0
1,100,592	+		Sama_0910	0.24	-0.2
1,100,592	+		Sama_0910	0.24	+1.8
1,100,593	-		Sama_0910	0.24	+0.1
1,100,593	-		Sama_0910	0.24	+0.4
1,100,602	+		Sama_0910	0.26	+0.7
1,100,641	+		Sama_0910	0.33	+1.9
1,100,641	+		Sama_0910	0.33	-0.2
1,100,642	-		Sama_0910	0.33	-0.1
1,100,642	-		Sama_0910	0.33	-2.0
1,100,642	-		Sama_0910	0.33	-1.1
1,100,642	-		Sama_0910	0.33	-0.8
1,100,647	+		Sama_0910	0.34	+0.2
1,100,647	+		Sama_0910	0.34	-1.8
1,100,647	+		Sama_0910	0.34	-0.4
1,100,648	-		Sama_0910	0.34	+1.9
1,100,648	-		Sama_0910	0.34	+0.1
1,100,658	+		Sama_0910	0.36	+0.9
1,100,658	+		Sama_0910	0.36	-0.6
1,100,662	+		Sama_0910	0.37	+0.1
1,100,662	+		Sama_0910	0.37	-3.6
1,100,663	-		Sama_0910	0.37	+0.2
1,100,663	-		Sama_0910	0.37	-0.1
1,100,732	+		Sama_0910	0.50	+0.5
1,100,733	-		Sama_0910	0.50	+0.0
1,100,751	+		Sama_0910	0.53	-0.1
1,100,751	+		Sama_0910	0.53	-0.4
1,100,752	-		Sama_0910	0.53	+1.2
1,100,752	-		Sama_0910	0.53	+2.1
1,100,752	-		Sama_0910	0.53	+0.3
1,100,752	-		Sama_0910	0.53	+0.3
1,100,757	+		Sama_0910	0.54	-0.1
1,100,758	-		Sama_0910	0.54	-1.4
1,100,798	+		Sama_0910	0.62	+0.2
1,100,798	+		Sama_0910	0.62	+0.3
1,100,799	-		Sama_0910	0.62	-1.0
1,100,806	+		Sama_0910	0.63	+0.6
1,100,806	+		Sama_0910	0.63	+1.4
1,100,829	+		Sama_0910	0.68	-0.0
1,100,829	+		Sama_0910	0.68	-0.6
1,100,829	+		Sama_0910	0.68	-0.1
1,100,829	+		Sama_0910	0.68	-0.4
1,100,829	+		Sama_0910	0.68	+1.9
1,100,829	+		Sama_0910	0.68	-0.1
1,100,829	+		Sama_0910	0.68	+1.3
1,100,829	+		Sama_0910	0.68	-0.9
1,100,829	+		Sama_0910	0.68	+1.1
1,100,829	+		Sama_0910	0.68	+1.1
1,100,829	+		Sama_0910	0.68	-0.2
1,100,829	+		Sama_0910	0.68	-0.2
1,100,829	+		Sama_0910	0.68	+1.3
1,100,830	-		Sama_0910	0.68	-1.4
1,100,830	-		Sama_0910	0.68	+0.8
1,100,830	-		Sama_0910	0.68	-0.6
1,100,830	-		Sama_0910	0.68	-0.8
1,100,830	-		Sama_0910	0.68	-1.1
1,100,830	-		Sama_0910	0.68	-1.5
1,100,830	-		Sama_0910	0.68	-0.3
1,100,830	-		Sama_0910	0.68	+0.4
1,100,830	-		Sama_0910	0.68	-0.1
1,100,877	+		Sama_0910	0.76	-0.4
1,100,877	+		Sama_0910	0.76	-0.2
1,100,877	+		Sama_0910	0.76	+0.4
1,100,877	+		Sama_0910	0.76	-0.5
1,100,878	-		Sama_0910	0.77	-2.6
1,100,939	+		Sama_0910	0.88	+0.1
1,100,940	-		Sama_0910	0.88	+0.1
1,101,020	+				+0.3
1,101,062	+				+0.4
1,101,086	+		Sama_0911	0.13	+1.7
1,101,087	-		Sama_0911	0.14	-0.6
1,101,105	+		Sama_0911	0.24	+1.1
1,101,186	+		Sama_0911	0.67	-0.0
1,101,206	-		Sama_0911	0.78	+0.1
1,101,206	-		Sama_0911	0.78	+1.9
1,101,225	+		Sama_0911	0.88	+0.8
1,101,226	-		Sama_0911	0.89	+0.2
1,101,226	-		Sama_0911	0.89	+2.2
1,101,226	-		Sama_0911	0.89	+0.6
1,101,230	+				+0.2
1,101,230	+				-0.0
1,101,231	-				-1.7
1,101,231	-				-0.5
1,101,231	-				+0.5
1,101,231	-				+2.3
1,101,231	-				-0.8
1,101,235	+				-1.0
1,101,236	-				-0.1
1,101,236	-				-0.6
1,101,265	+				-0.0
1,101,265	+				-1.4
1,101,266	-				+1.0
1,101,282	+				+0.2
1,101,283	-				+0.7
1,101,286	+				+0.3
1,101,287	-				-0.2
1,101,287	-				+1.0
1,101,287	-				-0.3
1,101,389	-				+0.5
1,102,774	-	pgi	Sama_0912	0.81	+0.7
1,102,836	-	pgi	Sama_0912	0.85	-1.4