Strain Fitness in Shewanella amazonensis SB2B around Sama_0911

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0909 and Sama_0910 are separated by 114 nucleotidesSama_0910 and Sama_0911 are separated by 57 nucleotidesSama_0911 and pgi are separated by 197 nucleotides Sama_0909: Sama_0909 - response regulator receiver protein (RefSeq), at 1,099,255 to 1,100,349 _0909 Sama_0910: Sama_0910 - hypothetical protein (RefSeq), at 1,100,464 to 1,101,003 _0910 Sama_0911: Sama_0911 - hypothetical protein (RefSeq), at 1,101,061 to 1,101,246 _0911 Sama_0912: pgi - glucose-6-phosphate isomerase (RefSeq), at 1,101,444 to 1,103,081 pgi Position (kb) 1101 1102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1100.084 kb on + strand, within Sama_0909at 1100.085 kb on - strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.201 kb on + strand, within Sama_0909at 1100.202 kb on - strand, within Sama_0909at 1100.202 kb on - strand, within Sama_0909at 1100.202 kb on - strand, within Sama_0909at 1100.202 kb on - strand, within Sama_0909at 1100.202 kb on - strand, within Sama_0909at 1100.309 kb on + strandat 1100.330 kb on + strandat 1100.340 kb on + strandat 1100.396 kb on + strandat 1100.397 kb on - strandat 1100.398 kb on + strandat 1100.399 kb on - strandat 1100.422 kb on - strandat 1100.424 kb on + strandat 1100.424 kb on + strandat 1100.424 kb on + strandat 1100.428 kb on - strandat 1100.434 kb on + strandat 1100.463 kb on + strandat 1100.464 kb on - strandat 1100.496 kb on + strandat 1100.496 kb on + strandat 1100.497 kb on - strandat 1100.537 kb on + strand, within Sama_0910at 1100.538 kb on - strand, within Sama_0910at 1100.590 kb on + strand, within Sama_0910at 1100.590 kb on + strand, within Sama_0910at 1100.590 kb on + strand, within Sama_0910at 1100.590 kb on + strand, within Sama_0910at 1100.590 kb on + strand, within Sama_0910at 1100.591 kb on - strand, within Sama_0910at 1100.592 kb on + strand, within Sama_0910at 1100.592 kb on + strand, within Sama_0910at 1100.592 kb on + strand, within Sama_0910at 1100.593 kb on - strand, within Sama_0910at 1100.593 kb on - strand, within Sama_0910at 1100.602 kb on + strand, within Sama_0910at 1100.641 kb on + strand, within Sama_0910at 1100.641 kb on + strand, within Sama_0910at 1100.642 kb on - strand, within Sama_0910at 1100.642 kb on - strand, within Sama_0910at 1100.642 kb on - strand, within Sama_0910at 1100.642 kb on - strand, within Sama_0910at 1100.647 kb on + strand, within Sama_0910at 1100.647 kb on + strand, within Sama_0910at 1100.647 kb on + strand, within Sama_0910at 1100.648 kb on - strand, within Sama_0910at 1100.648 kb on - strand, within Sama_0910at 1100.658 kb on + strand, within Sama_0910at 1100.658 kb on + strand, within Sama_0910at 1100.662 kb on + strand, within Sama_0910at 1100.662 kb on + strand, within Sama_0910at 1100.663 kb on - strand, within Sama_0910at 1100.663 kb on - strand, within Sama_0910at 1100.732 kb on + strand, within Sama_0910at 1100.733 kb on - strand, within Sama_0910at 1100.751 kb on + strand, within Sama_0910at 1100.751 kb on + strand, within Sama_0910at 1100.752 kb on - strand, within Sama_0910at 1100.752 kb on - strand, within Sama_0910at 1100.752 kb on - strand, within Sama_0910at 1100.752 kb on - strand, within Sama_0910at 1100.757 kb on + strand, within Sama_0910at 1100.758 kb on - strand, within Sama_0910at 1100.798 kb on + strand, within Sama_0910at 1100.798 kb on + strand, within Sama_0910at 1100.799 kb on - strand, within Sama_0910at 1100.806 kb on + strand, within Sama_0910at 1100.806 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.829 kb on + strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.830 kb on - strand, within Sama_0910at 1100.877 kb on + strand, within Sama_0910at 1100.877 kb on + strand, within Sama_0910at 1100.877 kb on + strand, within Sama_0910at 1100.877 kb on + strand, within Sama_0910at 1100.878 kb on - strand, within Sama_0910at 1100.939 kb on + strand, within Sama_0910at 1100.940 kb on - strand, within Sama_0910at 1101.020 kb on + strandat 1101.062 kb on + strandat 1101.086 kb on + strand, within Sama_0911at 1101.087 kb on - strand, within Sama_0911at 1101.105 kb on + strand, within Sama_0911at 1101.186 kb on + strand, within Sama_0911at 1101.206 kb on - strand, within Sama_0911at 1101.206 kb on - strand, within Sama_0911at 1101.225 kb on + strand, within Sama_0911at 1101.226 kb on - strand, within Sama_0911at 1101.226 kb on - strand, within Sama_0911at 1101.226 kb on - strand, within Sama_0911at 1101.230 kb on + strandat 1101.230 kb on + strandat 1101.231 kb on - strandat 1101.231 kb on - strandat 1101.231 kb on - strandat 1101.231 kb on - strandat 1101.231 kb on - strandat 1101.235 kb on + strandat 1101.236 kb on - strandat 1101.236 kb on - strandat 1101.265 kb on + strandat 1101.265 kb on + strandat 1101.266 kb on - strandat 1101.282 kb on + strandat 1101.283 kb on - strandat 1101.286 kb on + strandat 1101.287 kb on - strandat 1101.287 kb on - strandat 1101.287 kb on - strandat 1101.389 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,100,084 + Sama_0909 0.76 -0.1
1,100,085 - Sama_0909 0.76 -0.1
1,100,201 + Sama_0909 0.86 -0.1
1,100,201 + Sama_0909 0.86 -0.5
1,100,201 + Sama_0909 0.86 -1.6
1,100,201 + Sama_0909 0.86 -2.5
1,100,201 + Sama_0909 0.86 -0.2
1,100,201 + Sama_0909 0.86 -2.0
1,100,201 + Sama_0909 0.86 +1.2
1,100,201 + Sama_0909 0.86 +0.7
1,100,201 + Sama_0909 0.86 -0.4
1,100,201 + Sama_0909 0.86 -0.8
1,100,202 - Sama_0909 0.86 -0.3
1,100,202 - Sama_0909 0.86 -0.9
1,100,202 - Sama_0909 0.86 +2.0
1,100,202 - Sama_0909 0.86 -0.0
1,100,202 - Sama_0909 0.86 -0.6
1,100,309 + +0.2
1,100,330 + -0.4
1,100,340 + +0.2
1,100,396 + +0.6
1,100,397 - -0.8
1,100,398 + -0.4
1,100,399 - -0.3
1,100,422 - -0.3
1,100,424 + -0.9
1,100,424 + +0.7
1,100,424 + -1.7
1,100,428 - -1.4
1,100,434 + -0.5
1,100,463 + -1.2
1,100,464 - +0.4
1,100,496 + -0.1
1,100,496 + -0.9
1,100,497 - +0.6
1,100,537 + Sama_0910 0.14 -0.1
1,100,538 - Sama_0910 0.14 -1.1
1,100,590 + Sama_0910 0.23 +3.0
1,100,590 + Sama_0910 0.23 -0.9
1,100,590 + Sama_0910 0.23 -1.6
1,100,590 + Sama_0910 0.23 +0.7
1,100,590 + Sama_0910 0.23 +0.5
1,100,591 - Sama_0910 0.24 -0.9
1,100,592 + Sama_0910 0.24 -0.0
1,100,592 + Sama_0910 0.24 -0.2
1,100,592 + Sama_0910 0.24 +1.8
1,100,593 - Sama_0910 0.24 +0.1
1,100,593 - Sama_0910 0.24 +0.4
1,100,602 + Sama_0910 0.26 +0.7
1,100,641 + Sama_0910 0.33 +1.9
1,100,641 + Sama_0910 0.33 -0.2
1,100,642 - Sama_0910 0.33 -0.1
1,100,642 - Sama_0910 0.33 -2.0
1,100,642 - Sama_0910 0.33 -1.1
1,100,642 - Sama_0910 0.33 -0.8
1,100,647 + Sama_0910 0.34 +0.2
1,100,647 + Sama_0910 0.34 -1.8
1,100,647 + Sama_0910 0.34 -0.4
1,100,648 - Sama_0910 0.34 +1.9
1,100,648 - Sama_0910 0.34 +0.1
1,100,658 + Sama_0910 0.36 +0.9
1,100,658 + Sama_0910 0.36 -0.6
1,100,662 + Sama_0910 0.37 +0.1
1,100,662 + Sama_0910 0.37 -3.6
1,100,663 - Sama_0910 0.37 +0.2
1,100,663 - Sama_0910 0.37 -0.1
1,100,732 + Sama_0910 0.50 +0.5
1,100,733 - Sama_0910 0.50 +0.0
1,100,751 + Sama_0910 0.53 -0.1
1,100,751 + Sama_0910 0.53 -0.4
1,100,752 - Sama_0910 0.53 +1.2
1,100,752 - Sama_0910 0.53 +2.1
1,100,752 - Sama_0910 0.53 +0.3
1,100,752 - Sama_0910 0.53 +0.3
1,100,757 + Sama_0910 0.54 -0.1
1,100,758 - Sama_0910 0.54 -1.4
1,100,798 + Sama_0910 0.62 +0.2
1,100,798 + Sama_0910 0.62 +0.3
1,100,799 - Sama_0910 0.62 -1.0
1,100,806 + Sama_0910 0.63 +0.6
1,100,806 + Sama_0910 0.63 +1.4
1,100,829 + Sama_0910 0.68 -0.0
1,100,829 + Sama_0910 0.68 -0.6
1,100,829 + Sama_0910 0.68 -0.1
1,100,829 + Sama_0910 0.68 -0.4
1,100,829 + Sama_0910 0.68 +1.9
1,100,829 + Sama_0910 0.68 -0.1
1,100,829 + Sama_0910 0.68 +1.3
1,100,829 + Sama_0910 0.68 -0.9
1,100,829 + Sama_0910 0.68 +1.1
1,100,829 + Sama_0910 0.68 +1.1
1,100,829 + Sama_0910 0.68 -0.2
1,100,829 + Sama_0910 0.68 -0.2
1,100,829 + Sama_0910 0.68 +1.3
1,100,830 - Sama_0910 0.68 -1.4
1,100,830 - Sama_0910 0.68 +0.8
1,100,830 - Sama_0910 0.68 -0.6
1,100,830 - Sama_0910 0.68 -0.8
1,100,830 - Sama_0910 0.68 -1.1
1,100,830 - Sama_0910 0.68 -1.5
1,100,830 - Sama_0910 0.68 -0.3
1,100,830 - Sama_0910 0.68 +0.4
1,100,830 - Sama_0910 0.68 -0.1
1,100,877 + Sama_0910 0.76 -0.4
1,100,877 + Sama_0910 0.76 -0.2
1,100,877 + Sama_0910 0.76 +0.4
1,100,877 + Sama_0910 0.76 -0.5
1,100,878 - Sama_0910 0.77 -2.6
1,100,939 + Sama_0910 0.88 +0.1
1,100,940 - Sama_0910 0.88 +0.1
1,101,020 + +0.3
1,101,062 + +0.4
1,101,086 + Sama_0911 0.13 +1.7
1,101,087 - Sama_0911 0.14 -0.6
1,101,105 + Sama_0911 0.24 +1.1
1,101,186 + Sama_0911 0.67 -0.0
1,101,206 - Sama_0911 0.78 +0.1
1,101,206 - Sama_0911 0.78 +1.9
1,101,225 + Sama_0911 0.88 +0.8
1,101,226 - Sama_0911 0.89 +0.2
1,101,226 - Sama_0911 0.89 +2.2
1,101,226 - Sama_0911 0.89 +0.6
1,101,230 + +0.2
1,101,230 + -0.0
1,101,231 - -1.7
1,101,231 - -0.5
1,101,231 - +0.5
1,101,231 - +2.3
1,101,231 - -0.8
1,101,235 + -1.0
1,101,236 - -0.1
1,101,236 - -0.6
1,101,265 + -0.0
1,101,265 + -1.4
1,101,266 - +1.0
1,101,282 + +0.2
1,101,283 - +0.7
1,101,286 + +0.3
1,101,287 - -0.2
1,101,287 - +1.0
1,101,287 - -0.3
1,101,389 - +0.5

Or see this region's nucleotide sequence