Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0669 and Sama_0670 are separated by 107 nucleotides Sama_0670 and Sama_0671 are separated by 62 nucleotides Sama_0671 and Sama_0672 are separated by 286 nucleotides
Sama_0669: Sama_0669 - gamma-glutamyltransferase (RefSeq), at 824,619 to 826,325
_0669
Sama_0670: Sama_0670 - melanin biosynthesis protein TyrA, putative (RefSeq), at 826,433 to 827,368
_0670
Sama_0671: Sama_0671 - arginine repressor (RefSeq), at 827,431 to 827,895
_0671
Sama_0672: Sama_0672 - malate dehydrogenase (RefSeq), at 828,182 to 829,117
_0672
Position (kb) 826
827
828 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 825.433 kb on + strand, within Sama_0669 at 825.434 kb on - strand, within Sama_0669 at 825.484 kb on + strand, within Sama_0669 at 825.484 kb on + strand, within Sama_0669 at 825.484 kb on + strand, within Sama_0669 at 825.485 kb on - strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.578 kb on + strand, within Sama_0669 at 825.578 kb on + strand, within Sama_0669 at 825.578 kb on + strand, within Sama_0669 at 825.579 kb on - strand, within Sama_0669 at 825.612 kb on + strand, within Sama_0669 at 825.653 kb on + strand, within Sama_0669 at 825.654 kb on - strand, within Sama_0669 at 825.654 kb on - strand, within Sama_0669 at 825.654 kb on - strand, within Sama_0669 at 825.667 kb on - strand, within Sama_0669 at 825.691 kb on + strand, within Sama_0669 at 825.691 kb on + strand, within Sama_0669 at 825.756 kb on + strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.782 kb on + strand, within Sama_0669 at 825.797 kb on + strand, within Sama_0669 at 825.797 kb on + strand, within Sama_0669 at 825.798 kb on - strand, within Sama_0669 at 825.798 kb on - strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 826.038 kb on - strand, within Sama_0669 at 826.038 kb on - strand, within Sama_0669 at 826.088 kb on + strand, within Sama_0669 at 826.088 kb on + strand, within Sama_0669 at 826.088 kb on + strand, within Sama_0669 at 826.089 kb on - strand, within Sama_0669 at 826.143 kb on + strand, within Sama_0669 at 826.143 kb on + strand, within Sama_0669 at 826.143 kb on + strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.275 kb on + strand at 826.276 kb on - strand at 826.320 kb on + strand at 826.321 kb on - strand at 826.323 kb on + strand at 826.324 kb on - strand at 826.324 kb on - strand at 826.324 kb on - strand at 826.332 kb on + strand at 826.332 kb on + strand at 826.332 kb on + strand at 826.333 kb on - strand at 826.349 kb on + strand at 826.350 kb on - strand at 826.380 kb on - strand at 826.384 kb on + strand at 826.385 kb on - strand at 826.411 kb on + strand at 826.412 kb on - strand at 826.412 kb on - strand at 826.418 kb on + strand at 826.426 kb on + strand at 826.427 kb on - strand at 826.427 kb on - strand at 826.430 kb on + strand at 826.430 kb on + strand at 826.430 kb on + strand at 826.430 kb on + strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.432 kb on + strand at 826.432 kb on + strand at 826.432 kb on + strand at 826.433 kb on - strand at 826.438 kb on + strand at 826.447 kb on + strand at 826.470 kb on + strand at 826.471 kb on - strand at 826.568 kb on + strand, within Sama_0670 at 826.569 kb on - strand, within Sama_0670 at 826.574 kb on + strand, within Sama_0670 at 826.574 kb on + strand, within Sama_0670 at 826.574 kb on + strand, within Sama_0670 at 826.592 kb on + strand, within Sama_0670 at 826.592 kb on + strand, within Sama_0670 at 826.593 kb on - strand, within Sama_0670 at 826.609 kb on + strand, within Sama_0670 at 826.610 kb on - strand, within Sama_0670 at 826.610 kb on - strand, within Sama_0670 at 826.637 kb on + strand, within Sama_0670 at 826.638 kb on - strand, within Sama_0670 at 826.738 kb on - strand, within Sama_0670 at 826.738 kb on - strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.771 kb on - strand, within Sama_0670 at 826.771 kb on - strand, within Sama_0670 at 826.852 kb on + strand, within Sama_0670 at 826.852 kb on + strand, within Sama_0670 at 826.967 kb on + strand, within Sama_0670 at 826.967 kb on + strand, within Sama_0670 at 826.967 kb on + strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.977 kb on + strand, within Sama_0670 at 826.994 kb on - strand, within Sama_0670 at 827.058 kb on + strand, within Sama_0670 at 827.058 kb on + strand, within Sama_0670 at 827.059 kb on - strand, within Sama_0670 at 827.059 kb on - strand, within Sama_0670 at 827.059 kb on - strand, within Sama_0670 at 827.065 kb on + strand, within Sama_0670 at 827.072 kb on + strand, within Sama_0670 at 827.072 kb on + strand, within Sama_0670 at 827.073 kb on - strand, within Sama_0670 at 827.138 kb on - strand, within Sama_0670 at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.346 kb on - strand at 827.346 kb on - strand at 827.349 kb on + strand at 827.433 kb on - strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.446 kb on - strand at 827.446 kb on - strand at 827.446 kb on - strand at 827.446 kb on - strand at 827.457 kb on + strand at 827.458 kb on - strand at 827.491 kb on - strand, within Sama_0671 at 827.533 kb on - strand, within Sama_0671 at 827.579 kb on - strand, within Sama_0671 at 827.582 kb on - strand, within Sama_0671 at 827.582 kb on - strand, within Sama_0671 at 827.605 kb on - strand, within Sama_0671 at 827.605 kb on - strand, within Sama_0671 at 827.615 kb on - strand, within Sama_0671 at 827.629 kb on - strand, within Sama_0671 at 827.629 kb on - strand, within Sama_0671 at 827.629 kb on - strand, within Sama_0671 at 827.703 kb on - strand, within Sama_0671 at 827.703 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.749 kb on - strand, within Sama_0671 at 827.749 kb on - strand, within Sama_0671 at 827.782 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.896 kb on - strand at 828.066 kb on + strand at 828.067 kb on - strand at 828.094 kb on + strand at 828.120 kb on + strand at 828.120 kb on + strand at 828.120 kb on + strand at 828.121 kb on - strand at 828.147 kb on - strand at 828.165 kb on + strand at 828.166 kb on - strand at 828.166 kb on - strand at 828.166 kb on - strand at 828.166 kb on - strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.234 kb on + strand at 828.235 kb on - strand at 828.235 kb on - strand at 828.278 kb on + strand, within Sama_0672 at 828.278 kb on + strand, within Sama_0672
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 825,433 + Sama_0669 0.48 -0.5 825,434 - Sama_0669 0.48 -0.7 825,484 + Sama_0669 0.51 -1.6 825,484 + Sama_0669 0.51 +2.3 825,484 + Sama_0669 0.51 -1.3 825,485 - Sama_0669 0.51 -1.1 825,555 + Sama_0669 0.55 -0.1 825,555 + Sama_0669 0.55 -0.9 825,555 + Sama_0669 0.55 +0.5 825,555 + Sama_0669 0.55 +0.3 825,556 - Sama_0669 0.55 -0.2 825,556 - Sama_0669 0.55 -1.0 825,556 - Sama_0669 0.55 +0.4 825,556 - Sama_0669 0.55 -0.4 825,578 + Sama_0669 0.56 -0.5 825,578 + Sama_0669 0.56 +1.2 825,578 + Sama_0669 0.56 +0.7 825,579 - Sama_0669 0.56 -1.5 825,612 + Sama_0669 0.58 -1.9 825,653 + Sama_0669 0.61 +1.3 825,654 - Sama_0669 0.61 +0.2 825,654 - Sama_0669 0.61 +0.5 825,654 - Sama_0669 0.61 +1.3 825,667 - Sama_0669 0.61 +0.4 825,691 + Sama_0669 0.63 +1.3 825,691 + Sama_0669 0.63 -0.8 825,756 + Sama_0669 0.67 -0.1 825,757 - Sama_0669 0.67 +0.4 825,757 - Sama_0669 0.67 +0.9 825,757 - Sama_0669 0.67 -1.4 825,757 - Sama_0669 0.67 +1.1 825,757 - Sama_0669 0.67 -1.6 825,782 + Sama_0669 0.68 -1.5 825,797 + Sama_0669 0.69 -0.3 825,797 + Sama_0669 0.69 -0.3 825,798 - Sama_0669 0.69 +0.9 825,798 - Sama_0669 0.69 +0.6 825,856 + Sama_0669 0.72 -1.0 825,856 + Sama_0669 0.72 -2.3 825,856 + Sama_0669 0.72 -1.1 825,856 + Sama_0669 0.72 +0.9 825,856 + Sama_0669 0.72 -0.0 825,857 - Sama_0669 0.73 +0.8 825,857 - Sama_0669 0.73 +0.4 825,857 - Sama_0669 0.73 -1.0 825,857 - Sama_0669 0.73 -0.9 826,038 - Sama_0669 0.83 -1.9 826,038 - Sama_0669 0.83 -0.2 826,088 + Sama_0669 0.86 +1.3 826,088 + Sama_0669 0.86 -0.7 826,088 + Sama_0669 0.86 -0.7 826,089 - Sama_0669 0.86 -1.5 826,143 + Sama_0669 0.89 +0.2 826,143 + Sama_0669 0.89 +0.1 826,143 + Sama_0669 0.89 -2.4 826,144 - Sama_0669 0.89 -0.0 826,144 - Sama_0669 0.89 +0.2 826,144 - Sama_0669 0.89 -0.6 826,144 - Sama_0669 0.89 -0.6 826,144 - Sama_0669 0.89 -0.1 826,144 - Sama_0669 0.89 -0.1 826,144 - Sama_0669 0.89 +0.2 826,275 + +1.3 826,276 - -0.0 826,320 + +0.9 826,321 - +0.4 826,323 + -0.7 826,324 - -0.1 826,324 - -2.5 826,324 - +0.9 826,332 + -0.0 826,332 + +0.1 826,332 + -1.5 826,333 - -1.8 826,349 + -0.6 826,350 - -1.7 826,380 - +0.3 826,384 + -1.5 826,385 - -1.2 826,411 + -0.3 826,412 - -0.3 826,412 - +0.6 826,418 + -0.7 826,426 + -1.9 826,427 - +0.1 826,427 - -1.2 826,430 + -1.3 826,430 + -1.5 826,430 + +0.4 826,430 + +0.1 826,431 - -2.4 826,431 - -1.0 826,431 - -0.9 826,431 - -0.4 826,431 - -1.2 826,432 + +0.1 826,432 + -0.4 826,432 + -0.5 826,433 - +0.0 826,438 + +0.1 826,447 + -1.7 826,470 + -0.0 826,471 - -1.5 826,568 + Sama_0670 0.14 -0.3 826,569 - Sama_0670 0.15 -1.3 826,574 + Sama_0670 0.15 -0.8 826,574 + Sama_0670 0.15 -0.7 826,574 + Sama_0670 0.15 +0.1 826,592 + Sama_0670 0.17 -0.7 826,592 + Sama_0670 0.17 -1.5 826,593 - Sama_0670 0.17 +1.3 826,609 + Sama_0670 0.19 +0.1 826,610 - Sama_0670 0.19 -0.3 826,610 - Sama_0670 0.19 -1.1 826,637 + Sama_0670 0.22 +0.1 826,638 - Sama_0670 0.22 -0.3 826,738 - Sama_0670 0.33 -0.3 826,738 - Sama_0670 0.33 -2.2 826,770 + Sama_0670 0.36 -0.2 826,770 + Sama_0670 0.36 -0.4 826,770 + Sama_0670 0.36 -0.3 826,770 + Sama_0670 0.36 -1.7 826,770 + Sama_0670 0.36 +0.7 826,771 - Sama_0670 0.36 +1.5 826,771 - Sama_0670 0.36 -1.5 826,852 + Sama_0670 0.45 +0.3 826,852 + Sama_0670 0.45 -0.7 826,967 + Sama_0670 0.57 +0.0 826,967 + Sama_0670 0.57 -1.3 826,967 + Sama_0670 0.57 -1.0 826,968 - Sama_0670 0.57 -0.5 826,968 - Sama_0670 0.57 -0.9 826,968 - Sama_0670 0.57 +0.3 826,968 - Sama_0670 0.57 -1.3 826,968 - Sama_0670 0.57 -0.5 826,968 - Sama_0670 0.57 -0.2 826,968 - Sama_0670 0.57 -0.2 826,968 - Sama_0670 0.57 -0.3 826,977 + Sama_0670 0.58 -1.7 826,994 - Sama_0670 0.60 -1.0 827,058 + Sama_0670 0.67 -0.3 827,058 + Sama_0670 0.67 -0.4 827,059 - Sama_0670 0.67 -1.0 827,059 - Sama_0670 0.67 +0.4 827,059 - Sama_0670 0.67 +1.8 827,065 + Sama_0670 0.68 +0.2 827,072 + Sama_0670 0.68 +0.0 827,072 + Sama_0670 0.68 -1.1 827,073 - Sama_0670 0.68 -0.4 827,138 - Sama_0670 0.75 +0.4 827,345 + -0.0 827,345 + -1.9 827,345 + -2.4 827,345 + +0.4 827,346 - -0.3 827,346 - -1.0 827,349 + +0.9 827,433 - -0.4 827,442 - -0.3 827,442 - -0.2 827,446 - -1.9 827,446 - -0.9 827,446 - -0.9 827,446 - -1.3 827,457 + -1.7 827,458 - -1.9 827,491 - Sama_0671 0.13 -3.0 827,533 - Sama_0671 0.22 -2.9 827,579 - Sama_0671 0.32 -2.0 827,582 - Sama_0671 0.32 -2.7 827,582 - Sama_0671 0.32 -2.5 827,605 - Sama_0671 0.37 -3.1 827,605 - Sama_0671 0.37 -1.5 827,615 - Sama_0671 0.40 -0.3 827,629 - Sama_0671 0.43 -2.5 827,629 - Sama_0671 0.43 -1.3 827,629 - Sama_0671 0.43 -2.4 827,703 - Sama_0671 0.58 -1.9 827,703 - Sama_0671 0.58 -1.5 827,735 - Sama_0671 0.65 -1.9 827,735 - Sama_0671 0.65 -2.5 827,735 - Sama_0671 0.65 -2.4 827,735 - Sama_0671 0.65 -1.5 827,749 - Sama_0671 0.68 -1.0 827,749 - Sama_0671 0.68 -4.1 827,782 - Sama_0671 0.75 -3.5 827,812 - Sama_0671 0.82 -1.0 827,812 - Sama_0671 0.82 -3.4 827,812 - Sama_0671 0.82 -3.0 827,812 - Sama_0671 0.82 -2.9 827,896 - -3.1 828,066 + -0.1 828,067 - -2.2 828,094 + -1.7 828,120 + +1.6 828,120 + +1.0 828,120 + +1.5 828,121 - +2.9 828,147 - +3.8 828,165 + +1.2 828,166 - +3.6 828,166 - +2.5 828,166 - +2.6 828,166 - +4.0 828,167 + +3.2 828,167 + +2.2 828,167 + +2.7 828,167 + +1.6 828,167 + +1.3 828,168 - +3.0 828,168 - +3.4 828,168 - +2.6 828,168 - +3.1 828,168 - +3.0 828,168 - +1.8 828,177 + +2.3 828,177 + +2.6 828,177 + +2.9 828,177 + +2.9 828,177 + +3.8 828,178 - +2.7 828,178 - +3.3 828,178 - +2.8 828,178 - +2.8 828,178 - +3.6 828,178 - +3.6 828,178 - +3.0 828,178 - +1.9 828,178 - +3.2 828,234 + +2.8 828,235 - +3.1 828,235 - +2.7 828,278 + Sama_0672 0.10 +2.6 828,278 + Sama_0672 0.10 +1.4
Or see this region's nucleotide sequence