Strain Fitness in Shewanella amazonensis SB2B around Sama_0588

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0587 and Sama_0588 are separated by 3 nucleotidesSama_0588 and Sama_0589 are separated by 54 nucleotides Sama_0587: Sama_0587 - PepSY-associated TM helix (RefSeq), at 733,548 to 734,306 _0587 Sama_0588: Sama_0588 - FMN-binding (RefSeq), at 734,310 to 734,819 _0588 Sama_0589: Sama_0589 - phosphate-selective porin O and P (RefSeq), at 734,874 to 736,049 _0589 Position (kb) 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.335 kb on + strandat 733.336 kb on - strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.350 kb on + strandat 733.351 kb on - strandat 733.493 kb on + strandat 733.507 kb on + strandat 733.516 kb on + strandat 733.516 kb on + strandat 733.549 kb on + strandat 733.550 kb on - strandat 733.573 kb on - strandat 733.583 kb on - strandat 733.583 kb on - strandat 733.605 kb on + strandat 733.606 kb on - strandat 733.725 kb on + strand, within Sama_0587at 733.726 kb on - strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.816 kb on + strand, within Sama_0587at 733.817 kb on - strand, within Sama_0587at 733.914 kb on + strand, within Sama_0587at 733.915 kb on - strand, within Sama_0587at 733.942 kb on + strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 733.943 kb on - strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.024 kb on + strand, within Sama_0587at 734.025 kb on - strand, within Sama_0587at 734.062 kb on + strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.063 kb on - strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.104 kb on + strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.105 kb on - strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.107 kb on + strand, within Sama_0587at 734.116 kb on - strand, within Sama_0587at 734.170 kb on - strand, within Sama_0587at 734.176 kb on - strand, within Sama_0587at 734.217 kb on - strand, within Sama_0587at 734.276 kb on + strandat 734.277 kb on - strandat 734.286 kb on - strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.341 kb on + strandat 734.342 kb on - strandat 734.342 kb on - strandat 734.376 kb on + strand, within Sama_0588at 734.409 kb on - strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.503 kb on + strand, within Sama_0588at 734.504 kb on - strand, within Sama_0588at 734.505 kb on + strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.506 kb on - strand, within Sama_0588at 734.511 kb on + strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.512 kb on - strand, within Sama_0588at 734.526 kb on + strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.527 kb on - strand, within Sama_0588at 734.561 kb on + strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.562 kb on - strand, within Sama_0588at 734.620 kb on + strand, within Sama_0588at 734.626 kb on - strand, within Sama_0588at 734.641 kb on + strand, within Sama_0588at 734.642 kb on - strand, within Sama_0588at 734.682 kb on - strand, within Sama_0588at 734.748 kb on - strand, within Sama_0588at 734.809 kb on + strandat 734.809 kb on + strandat 734.810 kb on - strandat 734.810 kb on - strandat 734.839 kb on + strandat 734.839 kb on + strandat 734.840 kb on - strandat 734.851 kb on + strandat 734.851 kb on + strandat 734.862 kb on + strandat 734.863 kb on - strandat 734.863 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.867 kb on - strandat 734.885 kb on - strandat 734.953 kb on - strandat 734.953 kb on - strandat 734.974 kb on + strandat 734.975 kb on - strandat 734.981 kb on + strandat 734.981 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.982 kb on - strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.985 kb on + strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 734.986 kb on - strandat 735.098 kb on - strand, within Sama_0589at 735.098 kb on - strand, within Sama_0589at 735.163 kb on + strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.164 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.180 kb on - strand, within Sama_0589at 735.197 kb on - strand, within Sama_0589at 735.201 kb on - strand, within Sama_0589at 735.237 kb on + strand, within Sama_0589at 735.238 kb on - strand, within Sama_0589at 735.248 kb on + strand, within Sama_0589at 735.331 kb on + strand, within Sama_0589at 735.331 kb on + strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.332 kb on - strand, within Sama_0589at 735.382 kb on - strand, within Sama_0589at 735.382 kb on - strand, within Sama_0589at 735.388 kb on + strand, within Sama_0589at 735.388 kb on + strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.389 kb on - strand, within Sama_0589at 735.492 kb on + strand, within Sama_0589at 735.493 kb on - strand, within Sama_0589at 735.493 kb on - strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.495 kb on + strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.496 kb on - strand, within Sama_0589at 735.515 kb on + strand, within Sama_0589at 735.515 kb on + strand, within Sama_0589at 735.516 kb on - strand, within Sama_0589at 735.516 kb on - strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.529 kb on + strand, within Sama_0589at 735.593 kb on + strand, within Sama_0589at 735.593 kb on + strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.594 kb on - strand, within Sama_0589at 735.603 kb on - strand, within Sama_0589at 735.603 kb on - strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.628 kb on + strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.629 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.714 kb on - strand, within Sama_0589at 735.742 kb on - strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.808 kb on + strand, within Sama_0589at 735.809 kb on - strand, within Sama_0589at 735.809 kb on - strand, within Sama_0589

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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733,335 + -2.8
733,335 + -0.2
733,335 + +1.8
733,335 + -0.9
733,335 + -0.5
733,335 + -0.7
733,336 - -3.1
733,350 + +0.8
733,350 + -0.0
733,350 + +0.3
733,350 + -0.7
733,350 + -0.4
733,351 - -0.0
733,493 + +0.1
733,507 + -0.6
733,516 + -0.6
733,516 + +0.6
733,549 + -1.0
733,550 - -0.8
733,573 - +1.2
733,583 - -1.9
733,583 - -2.1
733,605 + -2.8
733,606 - -0.3
733,725 + Sama_0587 0.23 -1.7
733,726 - Sama_0587 0.23 -0.9
733,816 + Sama_0587 0.35 -1.7
733,816 + Sama_0587 0.35 -1.5
733,817 - Sama_0587 0.35 -2.1
733,914 + Sama_0587 0.48 -0.7
733,915 - Sama_0587 0.48 -2.2
733,942 + Sama_0587 0.52 -1.5
733,943 - Sama_0587 0.52 -3.0
733,943 - Sama_0587 0.52 -0.7
733,943 - Sama_0587 0.52 -2.3
733,943 - Sama_0587 0.52 -1.0
734,024 + Sama_0587 0.63 -0.7
734,024 + Sama_0587 0.63 -2.1
734,024 + Sama_0587 0.63 -1.4
734,025 - Sama_0587 0.63 -1.0
734,062 + Sama_0587 0.68 -1.7
734,063 - Sama_0587 0.68 +0.2
734,063 - Sama_0587 0.68 -1.5
734,063 - Sama_0587 0.68 -2.5
734,104 + Sama_0587 0.73 -3.3
734,104 + Sama_0587 0.73 +1.3
734,105 - Sama_0587 0.73 -0.4
734,105 - Sama_0587 0.73 -1.7
734,107 + Sama_0587 0.74 -1.4
734,107 + Sama_0587 0.74 -0.6
734,116 - Sama_0587 0.75 -1.3
734,170 - Sama_0587 0.82 +0.7
734,176 - Sama_0587 0.83 -0.5
734,217 - Sama_0587 0.88 -0.7
734,276 + -0.3
734,277 - -1.5
734,286 - -2.0
734,341 + -1.4
734,341 + -2.7
734,341 + -2.0
734,341 + -0.7
734,342 - -1.9
734,342 - -1.0
734,376 + Sama_0588 0.13 -1.3
734,409 - Sama_0588 0.19 -2.3
734,503 + Sama_0588 0.38 -1.9
734,503 + Sama_0588 0.38 -0.7
734,504 - Sama_0588 0.38 -0.3
734,505 + Sama_0588 0.38 -1.7
734,506 - Sama_0588 0.38 -1.5
734,506 - Sama_0588 0.38 -2.9
734,511 + Sama_0588 0.39 -3.1
734,512 - Sama_0588 0.40 -0.9
734,512 - Sama_0588 0.40 -1.2
734,526 + Sama_0588 0.42 +0.3
734,527 - Sama_0588 0.43 -3.3
734,527 - Sama_0588 0.43 -1.5
734,561 + Sama_0588 0.49 -0.6
734,562 - Sama_0588 0.49 -3.1
734,562 - Sama_0588 0.49 -2.2
734,620 + Sama_0588 0.61 -2.3
734,626 - Sama_0588 0.62 -2.5
734,641 + Sama_0588 0.65 -0.9
734,642 - Sama_0588 0.65 -1.7
734,682 - Sama_0588 0.73 -2.1
734,748 - Sama_0588 0.86 -0.9
734,809 + -2.0
734,809 + +1.6
734,810 - -3.3
734,810 - -2.0
734,839 + -0.3
734,839 + -1.5
734,840 - -0.1
734,851 + -0.4
734,851 + -2.1
734,862 + -2.3
734,863 - -0.0
734,863 - +0.7
734,867 - -0.3
734,867 - -0.5
734,867 - +0.3
734,885 - -1.4
734,953 - -0.9
734,953 - -3.3
734,974 + -1.3
734,975 - -0.9
734,981 + -3.1
734,981 - -0.3
734,982 - -1.6
734,982 - -0.4
734,982 - -0.3
734,982 - -1.1
734,985 + -2.3
734,985 + -3.3
734,985 + -1.3
734,985 + +1.3
734,985 + -0.7
734,986 - -1.3
734,986 - -2.3
734,986 - -3.3
734,986 - -2.8
734,986 - -0.0
735,098 - Sama_0589 0.19 -0.1
735,098 - Sama_0589 0.19 -0.7
735,163 + Sama_0589 0.25 -0.5
735,164 - Sama_0589 0.25 -1.4
735,164 - Sama_0589 0.25 -1.1
735,180 - Sama_0589 0.26 -2.3
735,180 - Sama_0589 0.26 -2.5
735,180 - Sama_0589 0.26 -0.3
735,180 - Sama_0589 0.26 -2.1
735,197 - Sama_0589 0.27 -2.4
735,201 - Sama_0589 0.28 -2.8
735,237 + Sama_0589 0.31 -1.3
735,238 - Sama_0589 0.31 -1.6
735,248 + Sama_0589 0.32 -1.9
735,331 + Sama_0589 0.39 -0.9
735,331 + Sama_0589 0.39 -2.0
735,332 - Sama_0589 0.39 -0.5
735,332 - Sama_0589 0.39 -3.4
735,332 - Sama_0589 0.39 -1.2
735,382 - Sama_0589 0.43 -1.0
735,382 - Sama_0589 0.43 -1.0
735,388 + Sama_0589 0.44 -1.5
735,388 + Sama_0589 0.44 -1.7
735,389 - Sama_0589 0.44 -0.9
735,389 - Sama_0589 0.44 -2.0
735,389 - Sama_0589 0.44 -2.2
735,492 + Sama_0589 0.53 -0.3
735,493 - Sama_0589 0.53 -1.9
735,493 - Sama_0589 0.53 -1.1
735,495 + Sama_0589 0.53 -1.5
735,495 + Sama_0589 0.53 -2.3
735,495 + Sama_0589 0.53 -1.3
735,495 + Sama_0589 0.53 -2.2
735,495 + Sama_0589 0.53 -2.4
735,495 + Sama_0589 0.53 -0.7
735,496 - Sama_0589 0.53 -1.5
735,496 - Sama_0589 0.53 -0.0
735,496 - Sama_0589 0.53 -2.3
735,496 - Sama_0589 0.53 -0.7
735,496 - Sama_0589 0.53 -3.3
735,496 - Sama_0589 0.53 -2.1
735,496 - Sama_0589 0.53 -1.3
735,496 - Sama_0589 0.53 -2.3
735,515 + Sama_0589 0.55 -0.7
735,515 + Sama_0589 0.55 -2.9
735,516 - Sama_0589 0.55 -1.0
735,516 - Sama_0589 0.55 -2.0
735,529 + Sama_0589 0.56 -1.1
735,529 + Sama_0589 0.56 -2.0
735,529 + Sama_0589 0.56 +0.1
735,529 + Sama_0589 0.56 +0.5
735,593 + Sama_0589 0.61 -0.3
735,593 + Sama_0589 0.61 -2.5
735,594 - Sama_0589 0.61 -1.0
735,594 - Sama_0589 0.61 -0.9
735,594 - Sama_0589 0.61 -0.5
735,594 - Sama_0589 0.61 -0.9
735,603 - Sama_0589 0.62 -1.6
735,603 - Sama_0589 0.62 -1.4
735,628 + Sama_0589 0.64 -2.1
735,628 + Sama_0589 0.64 -1.7
735,628 + Sama_0589 0.64 -1.3
735,628 + Sama_0589 0.64 -0.9
735,629 - Sama_0589 0.64 +0.6
735,629 - Sama_0589 0.64 -1.4
735,629 - Sama_0589 0.64 +0.3
735,714 - Sama_0589 0.71 -1.9
735,714 - Sama_0589 0.71 +0.1
735,714 - Sama_0589 0.71 -2.4
735,742 - Sama_0589 0.74 -1.6
735,808 + Sama_0589 0.79 -1.3
735,808 + Sama_0589 0.79 -1.4
735,808 + Sama_0589 0.79 -1.1
735,808 + Sama_0589 0.79 -1.5
735,808 + Sama_0589 0.79 -1.9
735,808 + Sama_0589 0.79 -0.4
735,809 - Sama_0589 0.80 -1.3
735,809 - Sama_0589 0.80 -3.3

Or see this region's nucleotide sequence