Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0980

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0977 and Psest_0978 are separated by 96 nucleotidesPsest_0978 and Psest_0979 are separated by 127 nucleotidesPsest_0979 and Psest_0980 are separated by 47 nucleotidesPsest_0980 and Psest_0981 are separated by 28 nucleotides Psest_0977: Psest_0977 - tRNA_Leu_GAG, at 1,060,289 to 1,060,374 _0977 Psest_0978: Psest_0978 - tRNA_Met_CAT, at 1,060,471 to 1,060,547 _0978 Psest_0979: Psest_0979 - Uncharacterized protein conserved in bacteria, at 1,060,675 to 1,061,133 _0979 Psest_0980: Psest_0980 - transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication, at 1,061,181 to 1,062,662 _0980 Psest_0981: Psest_0981 - translation initiation factor IF-2, at 1,062,691 to 1,065,192 _0981 Position (kb) 1061 1062 1063Strain fitness (log2 ratio) -3 -2 -1 0 1at 1060.391 kb on + strandat 1060.391 kb on + strandat 1060.391 kb on + strandat 1060.422 kb on + strandat 1060.566 kb on + strandat 1060.579 kb on + strandat 1060.579 kb on + strandat 1060.652 kb on + strandat 1060.652 kb on + strandat 1060.652 kb on + strandat 1060.652 kb on + strandat 1060.652 kb on + strandat 1060.652 kb on + strandat 1060.652 kb on + strandat 1062.660 kb on + strandat 1062.660 kb on + strandat 1062.664 kb on + strandat 1062.664 kb on + strandat 1062.664 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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1,060,391 + +0.2
1,060,391 + -0.4
1,060,391 + -0.5
1,060,422 + +0.8
1,060,566 + -0.6
1,060,579 + -0.2
1,060,579 + -0.2
1,060,652 + -0.4
1,060,652 + +1.1
1,060,652 + -1.4
1,060,652 + -0.4
1,060,652 + +0.3
1,060,652 + -0.3
1,060,652 + -1.7
1,062,660 + -1.2
1,062,660 + +0.4
1,062,664 + -1.6
1,062,664 + -3.2
1,062,664 + -0.9

Or see this region's nucleotide sequence