Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08910 and PGA1_c08920 are separated by 355 nucleotides PGA1_c08920 and PGA1_c08930 are separated by 1 nucleotides PGA1_c08930 and PGA1_c08940 overlap by 4 nucleotides
PGA1_c08910: PGA1_c08910 - riboflavin synthase alpha chain, at 921,090 to 921,683
_c08910
PGA1_c08920: PGA1_c08920 - 3,4-dihydroxy-2-butanone 4-phosphate synthase RibB, at 922,039 to 923,160
_c08920
PGA1_c08930: PGA1_c08930 - 6,7-dimethyl-8-ribityllumazine synthase RibH, at 923,162 to 923,713
_c08930
PGA1_c08940: PGA1_c08940 - N utilization substance protein B homolog, at 923,710 to 924,201
_c08940
Position (kb) 922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 921.663 kb on - strand at 921.708 kb on + strand at 921.708 kb on + strand at 921.750 kb on + strand at 921.760 kb on - strand at 921.839 kb on - strand at 921.849 kb on - strand at 921.849 kb on - strand at 921.875 kb on - strand at 921.878 kb on - strand at 921.880 kb on - strand at 921.903 kb on + strand at 921.903 kb on + strand at 921.910 kb on + strand at 921.910 kb on + strand at 921.930 kb on + strand at 921.956 kb on - strand at 922.008 kb on + strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.016 kb on - strand at 922.023 kb on + strand at 922.044 kb on + strand at 922.060 kb on - strand at 922.174 kb on + strand, within PGA1_c08920 at 922.243 kb on - strand, within PGA1_c08920 at 922.303 kb on + strand, within PGA1_c08920 at 922.368 kb on - strand, within PGA1_c08920 at 922.401 kb on - strand, within PGA1_c08920 at 922.420 kb on - strand, within PGA1_c08920 at 922.422 kb on + strand, within PGA1_c08920 at 922.556 kb on - strand, within PGA1_c08920 at 922.561 kb on - strand, within PGA1_c08920 at 922.718 kb on - strand, within PGA1_c08920 at 922.826 kb on - strand, within PGA1_c08920 at 922.828 kb on + strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.836 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.915 kb on - strand, within PGA1_c08920 at 922.970 kb on - strand, within PGA1_c08920 at 922.986 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.006 kb on + strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.014 kb on - strand, within PGA1_c08920 at 923.038 kb on - strand, within PGA1_c08920 at 923.053 kb on - strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.111 kb on + strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.119 kb on - strand at 923.153 kb on - strand at 923.171 kb on + strand at 923.179 kb on - strand at 923.303 kb on + strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.318 kb on - strand, within PGA1_c08930 at 923.337 kb on + strand, within PGA1_c08930 at 923.399 kb on + strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.407 kb on - strand, within PGA1_c08930 at 923.432 kb on - strand, within PGA1_c08930 at 923.442 kb on - strand, within PGA1_c08930 at 923.481 kb on + strand, within PGA1_c08930 at 923.484 kb on + strand, within PGA1_c08930 at 923.488 kb on - strand, within PGA1_c08930
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 921,663 - -1.3 921,708 + -0.9 921,708 + +0.1 921,750 + +0.7 921,760 - -0.6 921,839 - +0.1 921,849 - +0.2 921,849 - +0.6 921,875 - +0.3 921,878 - +0.2 921,880 - -1.9 921,903 + -0.2 921,903 + +0.9 921,910 + -1.4 921,910 + +0.2 921,930 + +0.4 921,956 - -0.9 922,008 + -0.2 922,016 - -0.2 922,016 - -0.2 922,016 - -0.9 922,023 + -0.8 922,044 + +1.1 922,060 - -0.7 922,174 + PGA1_c08920 0.12 +1.7 922,243 - PGA1_c08920 0.18 -3.7 922,303 + PGA1_c08920 0.24 -0.5 922,368 - PGA1_c08920 0.29 +0.3 922,401 - PGA1_c08920 0.32 +1.5 922,420 - PGA1_c08920 0.34 +2.0 922,422 + PGA1_c08920 0.34 +0.8 922,556 - PGA1_c08920 0.46 -0.4 922,561 - PGA1_c08920 0.47 -0.1 922,718 - PGA1_c08920 0.61 -0.4 922,826 - PGA1_c08920 0.70 +1.4 922,828 + PGA1_c08920 0.70 -2.6 922,836 - PGA1_c08920 0.71 -0.1 922,836 - PGA1_c08920 0.71 +1.5 922,836 - PGA1_c08920 0.71 -1.1 922,915 - PGA1_c08920 0.78 +1.2 922,915 - PGA1_c08920 0.78 +1.3 922,970 - PGA1_c08920 0.83 +1.4 922,986 + PGA1_c08920 0.84 -2.9 923,006 + PGA1_c08920 0.86 +0.7 923,006 + PGA1_c08920 0.86 -0.6 923,014 - PGA1_c08920 0.87 +0.0 923,014 - PGA1_c08920 0.87 +1.3 923,038 - PGA1_c08920 0.89 -0.6 923,053 - +1.1 923,111 + +0.5 923,111 + +1.2 923,111 + +0.2 923,119 - -0.9 923,119 - -1.6 923,119 - +0.4 923,119 - -0.7 923,119 - +0.3 923,119 - -3.6 923,119 - +0.4 923,153 - +0.8 923,171 + -1.1 923,179 - -0.2 923,303 + PGA1_c08930 0.26 -1.0 923,318 - PGA1_c08930 0.28 +1.6 923,318 - PGA1_c08930 0.28 -2.1 923,318 - PGA1_c08930 0.28 +0.7 923,337 + PGA1_c08930 0.32 +0.2 923,399 + PGA1_c08930 0.43 +0.3 923,407 - PGA1_c08930 0.44 -0.9 923,407 - PGA1_c08930 0.44 -0.4 923,432 - PGA1_c08930 0.49 +1.6 923,442 - PGA1_c08930 0.51 +1.3 923,481 + PGA1_c08930 0.58 +0.9 923,484 + PGA1_c08930 0.58 -1.3 923,488 - PGA1_c08930 0.59 +0.1
Or see this region's nucleotide sequence