Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0867

Experiment: Fusidic 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0866 and Psest_0867 are separated by 134 nucleotidesPsest_0867 and Psest_0868 are separated by 45 nucleotidesPsest_0868 and Psest_0869 are separated by 174 nucleotides Psest_0866: Psest_0866 - ATP-dependent transcriptional regulator, at 940,611 to 943,421 _0866 Psest_0867: Psest_0867 - hypothetical protein, at 943,556 to 943,984 _0867 Psest_0868: Psest_0868 - Glutathione S-transferase, at 944,030 to 944,653 _0868 Psest_0869: Psest_0869 - Acetyltransferase (isoleucine patch superfamily), at 944,828 to 945,376 _0869 Position (kb) 943 944Strain fitness (log2 ratio) -2 -1 0 1 2at 942.568 kb on - strand, within Psest_0866at 942.601 kb on - strand, within Psest_0866at 943.342 kb on - strandat 943.342 kb on - strandat 943.342 kb on - strandat 943.420 kb on - strandat 943.465 kb on - strandat 943.540 kb on - strandat 943.605 kb on - strand, within Psest_0867at 943.716 kb on + strand, within Psest_0867at 943.717 kb on - strand, within Psest_0867at 943.957 kb on - strandat 943.957 kb on - strandat 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.325 kb on + strand, within Psest_0868at 944.326 kb on - strand, within Psest_0868at 944.326 kb on - strand, within Psest_0868at 944.328 kb on + strand, within Psest_0868at 944.582 kb on + strand, within Psest_0868at 944.582 kb on + strand, within Psest_0868at 944.582 kb on + strand, within Psest_0868at 944.582 kb on + strand, within Psest_0868at 944.583 kb on - strand, within Psest_0868at 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.632 kb on + strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.633 kb on - strandat 944.634 kb on + strandat 944.634 kb on + strandat 944.634 kb on + strandat 944.870 kb on + strandat 944.870 kb on + strandat 944.870 kb on + strandat 944.870 kb on + strandat 944.871 kb on - strandat 944.871 kb on - strandat 944.871 kb on - strandat 944.871 kb on - strandat 944.874 kb on - strandat 944.933 kb on + strand, within Psest_0869

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
remove
942,568 - Psest_0866 0.70 -0.3
942,601 - Psest_0866 0.71 -0.0
943,342 - +1.4
943,342 - -0.1
943,342 - +0.0
943,420 - +1.7
943,465 - +0.7
943,540 - +0.3
943,605 - Psest_0867 0.11 -1.0
943,716 + Psest_0867 0.37 -0.0
943,717 - Psest_0867 0.38 -2.3
943,957 - +0.9
943,957 - +0.1
944,325 + Psest_0868 0.47 -0.2
944,325 + Psest_0868 0.47 +0.7
944,325 + Psest_0868 0.47 +0.2
944,325 + Psest_0868 0.47 +0.9
944,325 + Psest_0868 0.47 -0.8
944,326 - Psest_0868 0.47 -0.5
944,326 - Psest_0868 0.47 -1.0
944,328 + Psest_0868 0.48 +0.5
944,582 + Psest_0868 0.88 -0.4
944,582 + Psest_0868 0.88 +0.4
944,582 + Psest_0868 0.88 +0.5
944,582 + Psest_0868 0.88 -0.1
944,583 - Psest_0868 0.89 +1.1
944,632 + +2.6
944,632 + +0.7
944,632 + -0.8
944,632 + -0.5
944,632 + -0.8
944,632 + +0.2
944,632 + -0.8
944,632 + -0.3
944,632 + +0.7
944,632 + -0.1
944,632 + -1.3
944,632 + +0.5
944,632 + -0.7
944,632 + -0.7
944,633 - +0.6
944,633 - -1.5
944,633 - +0.0
944,633 - +1.2
944,633 - -1.2
944,633 - +1.4
944,633 - +0.0
944,633 - +0.0
944,633 - +0.3
944,633 - +1.0
944,634 + -0.5
944,634 + +0.3
944,634 + -0.3
944,870 + +1.3
944,870 + -0.2
944,870 + -1.0
944,870 + -1.1
944,871 - +0.2
944,871 - -1.3
944,871 - +0.7
944,871 - +1.3
944,874 - +0.9
944,933 + Psest_0869 0.19 +0.8

Or see this region's nucleotide sequence