Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0076

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0073 and Psest_0074 overlap by 4 nucleotidesPsest_0074 and Psest_0075 are separated by 316 nucleotidesPsest_0075 and Psest_0076 are separated by 57 nucleotidesPsest_0076 and Psest_0077 are separated by 125 nucleotides Psest_0073: Psest_0073 - ABC-type multidrug transport system, ATPase and permease components, at 74,360 to 76,165 _0073 Psest_0074: Psest_0074 - hypothetical protein, at 76,162 to 76,377 _0074 Psest_0075: Psest_0075 - Uncharacterized conserved protein, at 76,694 to 76,909 _0075 Psest_0076: Psest_0076 - NhaP-type Na+/H+ and K+/H+ antiporters, at 76,967 to 78,331 _0076 Psest_0077: Psest_0077 - luciferase family oxidoreductase, group 1, at 78,457 to 79,455 _0077 Position (kb) 76 77 78 79Strain fitness (log2 ratio) -2 -1 0 1 2 3at 76.172 kb on + strandat 76.173 kb on - strandat 76.173 kb on - strandat 76.258 kb on + strand, within Psest_0074at 76.338 kb on - strand, within Psest_0074at 76.338 kb on - strand, within Psest_0074at 76.442 kb on + strandat 76.443 kb on - strandat 76.521 kb on + strandat 76.521 kb on + strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.522 kb on - strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.712 kb on + strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 76.713 kb on - strandat 77.090 kb on - strandat 77.090 kb on - strandat 77.127 kb on + strand, within Psest_0076at 77.127 kb on + strand, within Psest_0076at 77.127 kb on + strand, within Psest_0076at 77.136 kb on + strand, within Psest_0076at 77.136 kb on + strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.137 kb on - strand, within Psest_0076at 77.139 kb on + strand, within Psest_0076at 77.139 kb on + strand, within Psest_0076at 77.140 kb on - strand, within Psest_0076at 77.140 kb on - strand, within Psest_0076at 77.140 kb on - strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.601 kb on + strand, within Psest_0076at 77.602 kb on - strand, within Psest_0076at 77.676 kb on + strand, within Psest_0076at 77.676 kb on + strand, within Psest_0076at 77.676 kb on + strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.677 kb on - strand, within Psest_0076at 77.745 kb on - strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.994 kb on + strand, within Psest_0076at 77.995 kb on - strand, within Psest_0076at 77.995 kb on - strand, within Psest_0076at 77.995 kb on - strand, within Psest_0076at 78.054 kb on + strand, within Psest_0076at 78.054 kb on + strand, within Psest_0076at 78.054 kb on + strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.055 kb on - strand, within Psest_0076at 78.228 kb on + strandat 78.228 kb on + strandat 78.228 kb on + strandat 78.228 kb on + strandat 78.229 kb on - strandat 78.229 kb on - strandat 78.229 kb on - strandat 78.421 kb on + strandat 78.421 kb on + strandat 78.422 kb on - strandat 78.424 kb on + strandat 78.424 kb on + strandat 78.459 kb on - strandat 78.526 kb on - strandat 78.726 kb on - strand, within Psest_0077at 78.797 kb on + strand, within Psest_0077at 78.797 kb on + strand, within Psest_0077at 78.797 kb on + strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.798 kb on - strand, within Psest_0077at 78.840 kb on - strand, within Psest_0077at 78.864 kb on - strand, within Psest_0077at 78.864 kb on - strand, within Psest_0077at 78.864 kb on - strand, within Psest_0077at 78.894 kb on - strand, within Psest_0077

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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76,172 + +0.4
76,173 - +0.1
76,173 - +0.3
76,258 + Psest_0074 0.44 +0.2
76,338 - Psest_0074 0.81 +0.4
76,338 - Psest_0074 0.81 -0.8
76,442 + +0.3
76,443 - +0.6
76,521 + +0.2
76,521 + -0.1
76,522 - +1.0
76,522 - +0.4
76,522 - +0.4
76,522 - +0.0
76,522 - +0.2
76,522 - -0.6
76,712 + -0.1
76,712 + +0.7
76,712 + +1.0
76,712 + -1.1
76,712 + -0.8
76,713 - +0.7
76,713 - +0.4
76,713 - +0.5
76,713 - -0.1
76,713 - +1.0
76,713 - +0.7
76,713 - +0.2
76,713 - +3.4
76,713 - +0.4
76,713 - -1.0
76,713 - +0.6
77,090 - +0.1
77,090 - +0.6
77,127 + Psest_0076 0.12 +1.2
77,127 + Psest_0076 0.12 -0.0
77,127 + Psest_0076 0.12 +1.0
77,136 + Psest_0076 0.12 -0.6
77,136 + Psest_0076 0.12 +0.8
77,137 - Psest_0076 0.12 +0.1
77,137 - Psest_0076 0.12 +0.5
77,137 - Psest_0076 0.12 -0.7
77,137 - Psest_0076 0.12 -0.6
77,139 + Psest_0076 0.13 +0.7
77,139 + Psest_0076 0.13 +0.5
77,140 - Psest_0076 0.13 -2.0
77,140 - Psest_0076 0.13 +0.4
77,140 - Psest_0076 0.13 -0.1
77,601 + Psest_0076 0.46 +0.0
77,601 + Psest_0076 0.46 +0.5
77,601 + Psest_0076 0.46 +0.2
77,601 + Psest_0076 0.46 -0.4
77,602 - Psest_0076 0.47 +0.2
77,676 + Psest_0076 0.52 +0.0
77,676 + Psest_0076 0.52 +1.0
77,676 + Psest_0076 0.52 +1.4
77,677 - Psest_0076 0.52 -0.3
77,677 - Psest_0076 0.52 +0.2
77,677 - Psest_0076 0.52 +1.2
77,677 - Psest_0076 0.52 -0.1
77,745 - Psest_0076 0.57 +2.1
77,994 + Psest_0076 0.75 +0.7
77,994 + Psest_0076 0.75 +0.0
77,994 + Psest_0076 0.75 -1.1
77,994 + Psest_0076 0.75 -0.4
77,994 + Psest_0076 0.75 +1.0
77,995 - Psest_0076 0.75 +2.0
77,995 - Psest_0076 0.75 +0.9
77,995 - Psest_0076 0.75 +0.6
78,054 + Psest_0076 0.80 +0.6
78,054 + Psest_0076 0.80 +1.0
78,054 + Psest_0076 0.80 +1.0
78,055 - Psest_0076 0.80 +0.6
78,055 - Psest_0076 0.80 +1.0
78,055 - Psest_0076 0.80 +0.0
78,055 - Psest_0076 0.80 +0.4
78,055 - Psest_0076 0.80 +1.2
78,228 + -0.4
78,228 + +1.0
78,228 + +0.7
78,228 + +2.6
78,229 - +0.9
78,229 - -0.1
78,229 - +1.0
78,421 + +0.0
78,421 + +0.7
78,422 - -0.8
78,424 + +1.0
78,424 + -1.3
78,459 - +0.0
78,526 - -0.4
78,726 - Psest_0077 0.27 +1.3
78,797 + Psest_0077 0.34 +2.0
78,797 + Psest_0077 0.34 +1.0
78,797 + Psest_0077 0.34 +2.0
78,798 - Psest_0077 0.34 +1.0
78,798 - Psest_0077 0.34 +0.6
78,798 - Psest_0077 0.34 +1.3
78,798 - Psest_0077 0.34 +0.8
78,798 - Psest_0077 0.34 +1.4
78,840 - Psest_0077 0.38 +0.3
78,864 - Psest_0077 0.41 -1.2
78,864 - Psest_0077 0.41 -0.2
78,864 - Psest_0077 0.41 +1.0
78,894 - Psest_0077 0.44 -0.1

Or see this region's nucleotide sequence