Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07570 and PGA1_c07580 are separated by 67 nucleotides PGA1_c07580 and PGA1_c07590 are separated by 497 nucleotides
PGA1_c07570: PGA1_c07570 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase CobT, at 781,316 to 782,332
_c07570
PGA1_c07580: PGA1_c07580 - glutathione-regulated potassium-efflux system protein KefC, at 782,400 to 784,292
_c07580
PGA1_c07590: PGA1_c07590 - aerotaxis receptor-like protein, at 784,790 to 786,010
_c07590
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 782.301 kb on + strand at 782.309 kb on - strand at 782.336 kb on + strand at 782.358 kb on - strand at 782.398 kb on - strand at 782.448 kb on - strand at 782.689 kb on + strand, within PGA1_c07580 at 782.697 kb on - strand, within PGA1_c07580 at 782.697 kb on - strand, within PGA1_c07580 at 782.725 kb on - strand, within PGA1_c07580 at 782.771 kb on + strand, within PGA1_c07580 at 782.786 kb on - strand, within PGA1_c07580 at 782.812 kb on + strand, within PGA1_c07580 at 782.818 kb on + strand, within PGA1_c07580 at 782.818 kb on + strand, within PGA1_c07580 at 782.826 kb on - strand, within PGA1_c07580 at 782.826 kb on - strand, within PGA1_c07580 at 782.851 kb on + strand, within PGA1_c07580 at 782.860 kb on - strand, within PGA1_c07580 at 782.860 kb on - strand, within PGA1_c07580 at 782.936 kb on - strand, within PGA1_c07580 at 782.941 kb on + strand, within PGA1_c07580 at 782.961 kb on + strand, within PGA1_c07580 at 782.963 kb on - strand, within PGA1_c07580 at 783.032 kb on + strand, within PGA1_c07580 at 783.032 kb on + strand, within PGA1_c07580 at 783.040 kb on - strand, within PGA1_c07580 at 783.040 kb on - strand, within PGA1_c07580 at 783.055 kb on - strand, within PGA1_c07580 at 783.055 kb on - strand, within PGA1_c07580 at 783.055 kb on - strand, within PGA1_c07580 at 783.066 kb on - strand, within PGA1_c07580 at 783.166 kb on + strand, within PGA1_c07580 at 783.166 kb on + strand, within PGA1_c07580 at 783.169 kb on - strand, within PGA1_c07580 at 783.218 kb on + strand, within PGA1_c07580 at 783.226 kb on - strand, within PGA1_c07580 at 783.233 kb on - strand, within PGA1_c07580 at 783.317 kb on + strand, within PGA1_c07580 at 783.325 kb on - strand, within PGA1_c07580 at 783.427 kb on - strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.575 kb on + strand, within PGA1_c07580 at 783.583 kb on - strand, within PGA1_c07580 at 783.583 kb on - strand, within PGA1_c07580 at 783.621 kb on - strand, within PGA1_c07580 at 783.627 kb on - strand, within PGA1_c07580 at 783.627 kb on - strand, within PGA1_c07580 at 783.632 kb on - strand, within PGA1_c07580 at 783.647 kb on + strand, within PGA1_c07580 at 783.670 kb on + strand, within PGA1_c07580 at 783.683 kb on + strand, within PGA1_c07580 at 783.785 kb on - strand, within PGA1_c07580 at 783.884 kb on - strand, within PGA1_c07580 at 783.905 kb on - strand, within PGA1_c07580 at 783.922 kb on - strand, within PGA1_c07580 at 783.990 kb on + strand, within PGA1_c07580 at 783.998 kb on - strand, within PGA1_c07580 at 784.076 kb on + strand, within PGA1_c07580 at 784.076 kb on + strand, within PGA1_c07580 at 784.084 kb on - strand, within PGA1_c07580 at 784.084 kb on - strand, within PGA1_c07580 at 784.197 kb on + strand at 784.197 kb on + strand at 784.197 kb on + strand at 784.197 kb on + strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.205 kb on - strand at 784.258 kb on + strand at 784.302 kb on - strand at 784.305 kb on + strand at 784.310 kb on + strand at 784.318 kb on - strand at 784.353 kb on + strand at 784.358 kb on + strand at 784.361 kb on - strand at 784.379 kb on - strand at 784.424 kb on + strand at 784.469 kb on + strand at 784.484 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.501 kb on + strand at 784.504 kb on - strand at 784.506 kb on + strand at 784.506 kb on + strand at 784.506 kb on + strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.509 kb on - strand at 784.514 kb on - strand at 784.519 kb on - strand at 784.568 kb on - strand at 784.578 kb on - strand at 784.592 kb on - strand at 784.615 kb on - strand at 784.623 kb on + strand at 784.623 kb on + strand at 784.623 kb on + strand at 784.631 kb on + strand at 784.650 kb on + strand at 784.673 kb on + strand at 784.714 kb on - strand at 784.730 kb on - strand at 784.767 kb on + strand at 784.793 kb on + strand at 784.793 kb on + strand at 784.793 kb on + strand at 784.801 kb on - strand at 784.803 kb on - strand at 784.808 kb on + strand at 784.820 kb on - strand at 784.913 kb on - strand, within PGA1_c07590 at 784.923 kb on - strand, within PGA1_c07590 at 784.947 kb on - strand, within PGA1_c07590 at 784.947 kb on - strand, within PGA1_c07590 at 784.981 kb on + strand, within PGA1_c07590 at 784.981 kb on + strand, within PGA1_c07590 at 785.118 kb on - strand, within PGA1_c07590 at 785.160 kb on - strand, within PGA1_c07590 at 785.168 kb on - strand, within PGA1_c07590
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 782,301 + +0.3 782,309 - +0.6 782,336 + -2.6 782,358 - -0.0 782,398 - -1.6 782,448 - +1.6 782,689 + PGA1_c07580 0.15 -0.2 782,697 - PGA1_c07580 0.16 -1.1 782,697 - PGA1_c07580 0.16 -0.2 782,725 - PGA1_c07580 0.17 -1.1 782,771 + PGA1_c07580 0.20 +1.6 782,786 - PGA1_c07580 0.20 +0.1 782,812 + PGA1_c07580 0.22 +1.1 782,818 + PGA1_c07580 0.22 +0.3 782,818 + PGA1_c07580 0.22 -1.4 782,826 - PGA1_c07580 0.23 +0.4 782,826 - PGA1_c07580 0.23 -0.7 782,851 + PGA1_c07580 0.24 -0.7 782,860 - PGA1_c07580 0.24 -0.1 782,860 - PGA1_c07580 0.24 -1.6 782,936 - PGA1_c07580 0.28 +0.4 782,941 + PGA1_c07580 0.29 -0.0 782,961 + PGA1_c07580 0.30 -0.4 782,963 - PGA1_c07580 0.30 -2.4 783,032 + PGA1_c07580 0.33 -1.0 783,032 + PGA1_c07580 0.33 -2.7 783,040 - PGA1_c07580 0.34 +1.1 783,040 - PGA1_c07580 0.34 +0.9 783,055 - PGA1_c07580 0.35 +0.6 783,055 - PGA1_c07580 0.35 -0.4 783,055 - PGA1_c07580 0.35 -2.0 783,066 - PGA1_c07580 0.35 -3.1 783,166 + PGA1_c07580 0.40 +0.1 783,166 + PGA1_c07580 0.40 +0.0 783,169 - PGA1_c07580 0.41 +0.1 783,218 + PGA1_c07580 0.43 -1.3 783,226 - PGA1_c07580 0.44 +1.0 783,233 - PGA1_c07580 0.44 -1.5 783,317 + PGA1_c07580 0.48 -1.5 783,325 - PGA1_c07580 0.49 -0.1 783,427 - PGA1_c07580 0.54 -1.2 783,575 + PGA1_c07580 0.62 +1.2 783,575 + PGA1_c07580 0.62 +3.1 783,575 + PGA1_c07580 0.62 -0.1 783,575 + PGA1_c07580 0.62 -0.2 783,575 + PGA1_c07580 0.62 -0.4 783,575 + PGA1_c07580 0.62 +0.7 783,575 + PGA1_c07580 0.62 -0.6 783,575 + PGA1_c07580 0.62 -0.2 783,575 + PGA1_c07580 0.62 -1.5 783,583 - PGA1_c07580 0.62 -1.3 783,583 - PGA1_c07580 0.62 -1.1 783,621 - PGA1_c07580 0.65 +0.1 783,627 - PGA1_c07580 0.65 -1.3 783,627 - PGA1_c07580 0.65 -0.1 783,632 - PGA1_c07580 0.65 -0.8 783,647 + PGA1_c07580 0.66 -1.7 783,670 + PGA1_c07580 0.67 -0.8 783,683 + PGA1_c07580 0.68 -0.3 783,785 - PGA1_c07580 0.73 +0.8 783,884 - PGA1_c07580 0.78 -0.2 783,905 - PGA1_c07580 0.80 +1.6 783,922 - PGA1_c07580 0.80 -3.4 783,990 + PGA1_c07580 0.84 -0.4 783,998 - PGA1_c07580 0.84 +0.7 784,076 + PGA1_c07580 0.89 -0.9 784,076 + PGA1_c07580 0.89 -1.6 784,084 - PGA1_c07580 0.89 -0.1 784,084 - PGA1_c07580 0.89 -1.1 784,197 + -2.1 784,197 + +0.3 784,197 + -0.1 784,197 + +0.4 784,205 - +1.2 784,205 - -0.2 784,205 - +0.5 784,205 - -1.9 784,258 + -1.9 784,302 - -0.2 784,305 + -0.2 784,310 + +1.5 784,318 - -0.5 784,353 + +1.5 784,358 + +0.6 784,361 - -0.5 784,379 - -0.6 784,424 + -0.3 784,469 + +0.0 784,484 + -0.8 784,501 + +2.9 784,501 + -1.6 784,501 + -2.9 784,501 + -1.9 784,501 + -1.6 784,501 + -1.5 784,501 + +1.6 784,501 + -2.1 784,501 + +0.7 784,501 + +0.3 784,501 + -1.1 784,501 + +0.0 784,501 + +1.2 784,504 - -2.1 784,506 + -0.6 784,506 + +1.3 784,506 + -1.6 784,509 - -0.8 784,509 - -0.1 784,509 - +1.4 784,509 - -0.3 784,509 - -0.2 784,509 - -0.3 784,509 - -0.2 784,509 - -1.1 784,514 - +0.8 784,519 - -0.8 784,568 - +0.2 784,578 - -0.1 784,592 - -1.3 784,615 - -0.5 784,623 + +0.7 784,623 + -0.7 784,623 + -0.9 784,631 + -0.8 784,650 + +0.5 784,673 + +0.7 784,714 - -2.4 784,730 - +0.1 784,767 + -2.2 784,793 + -0.8 784,793 + +1.2 784,793 + +0.7 784,801 - +0.7 784,803 - -0.5 784,808 + +1.4 784,820 - -1.1 784,913 - PGA1_c07590 0.10 -0.1 784,923 - PGA1_c07590 0.11 -1.4 784,947 - PGA1_c07590 0.13 -1.5 784,947 - PGA1_c07590 0.13 -0.4 784,981 + PGA1_c07590 0.16 -0.4 784,981 + PGA1_c07590 0.16 +0.7 785,118 - PGA1_c07590 0.27 +0.5 785,160 - PGA1_c07590 0.30 -0.3 785,168 - PGA1_c07590 0.31 +1.2
Or see this region's nucleotide sequence