Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0068

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0067 and Psest_0068 are separated by 101 nucleotidesPsest_0068 and Psest_0069 are separated by 79 nucleotides Psest_0067: Psest_0067 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 67,502 to 68,500 _0067 Psest_0068: Psest_0068 - Amidases related to nicotinamidase, at 68,602 to 69,156 _0068 Psest_0069: Psest_0069 - UDP-glucose-4-epimerase, at 69,236 to 70,300 _0069 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1 2at 67.699 kb on - strand, within Psest_0067at 67.835 kb on + strand, within Psest_0067at 67.917 kb on + strand, within Psest_0067at 68.519 kb on - strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.559 kb on + strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.560 kb on - strandat 68.645 kb on - strandat 68.645 kb on - strandat 69.136 kb on + strandat 69.136 kb on + strandat 69.210 kb on + strandat 69.210 kb on + strandat 69.210 kb on + strandat 69.606 kb on + strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.607 kb on - strand, within Psest_0069at 69.651 kb on + strand, within Psest_0069at 69.651 kb on + strand, within Psest_0069at 69.652 kb on - strand, within Psest_0069at 69.670 kb on + strand, within Psest_0069at 69.670 kb on + strand, within Psest_0069at 69.670 kb on + strand, within Psest_0069at 69.671 kb on - strand, within Psest_0069at 69.696 kb on + strand, within Psest_0069at 69.696 kb on + strand, within Psest_0069at 69.697 kb on - strand, within Psest_0069at 69.697 kb on - strand, within Psest_0069at 69.775 kb on - strand, within Psest_0069at 69.775 kb on - strand, within Psest_0069

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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67,699 - Psest_0067 0.20 +0.3
67,835 + Psest_0067 0.33 -1.0
67,917 + Psest_0067 0.42 +2.2
68,519 - -0.5
68,559 + +0.1
68,559 + +0.3
68,559 + -1.7
68,559 + +0.8
68,559 + +0.6
68,559 + +0.8
68,559 + +0.1
68,559 + -0.4
68,559 + +0.3
68,559 + +0.6
68,559 + -0.3
68,559 + +0.2
68,559 + +1.4
68,559 + +0.9
68,559 + -0.8
68,560 - +0.5
68,560 - +0.8
68,560 - +0.7
68,560 - -0.1
68,560 - +0.3
68,560 - +0.3
68,560 - -0.7
68,560 - -1.0
68,560 - +0.4
68,560 - +0.7
68,560 - -0.3
68,560 - -0.2
68,560 - +0.8
68,560 - -0.3
68,560 - -0.4
68,560 - +0.0
68,645 - +0.3
68,645 - -2.0
69,136 + +1.3
69,136 + +2.0
69,210 + -0.1
69,210 + +2.2
69,210 + +0.7
69,606 + Psest_0069 0.35 -0.4
69,607 - Psest_0069 0.35 +0.0
69,607 - Psest_0069 0.35 +0.5
69,607 - Psest_0069 0.35 -0.6
69,607 - Psest_0069 0.35 +0.1
69,607 - Psest_0069 0.35 +0.6
69,607 - Psest_0069 0.35 +0.4
69,651 + Psest_0069 0.39 +0.6
69,651 + Psest_0069 0.39 -0.2
69,652 - Psest_0069 0.39 +1.3
69,670 + Psest_0069 0.41 +0.7
69,670 + Psest_0069 0.41 -0.2
69,670 + Psest_0069 0.41 +1.8
69,671 - Psest_0069 0.41 -1.0
69,696 + Psest_0069 0.43 +1.4
69,696 + Psest_0069 0.43 +0.4
69,697 - Psest_0069 0.43 +0.4
69,697 - Psest_0069 0.43 +1.0
69,775 - Psest_0069 0.51 -0.6
69,775 - Psest_0069 0.51 +0.8

Or see this region's nucleotide sequence