Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0612 and Psest_0613 are separated by 400 nucleotides Psest_0613 and Psest_0614 are separated by 58 nucleotides
Psest_0612: Psest_0612 - outer membrane porin, OprD family., at 661,933 to 663,252
_0612
Psest_0613: Psest_0613 - hypothetical protein, at 663,653 to 664,033
_0613
Psest_0614: Psest_0614 - Outer membrane protein, at 664,092 to 665,399
_0614
Position (kb) 663
664
665 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 662.673 kb on + strand, within Psest_0612 at 662.673 kb on + strand, within Psest_0612 at 662.808 kb on + strand, within Psest_0612 at 662.809 kb on - strand, within Psest_0612 at 662.818 kb on + strand, within Psest_0612 at 662.818 kb on + strand, within Psest_0612 at 662.818 kb on + strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 662.819 kb on - strand, within Psest_0612 at 663.021 kb on + strand, within Psest_0612 at 663.021 kb on + strand, within Psest_0612 at 663.021 kb on + strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.022 kb on - strand, within Psest_0612 at 663.120 kb on - strand, within Psest_0612 at 663.133 kb on + strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.266 kb on - strand at 663.270 kb on - strand at 663.270 kb on - strand at 663.270 kb on - strand at 663.422 kb on + strand at 663.455 kb on + strand at 663.456 kb on - strand at 663.456 kb on - strand at 663.459 kb on + strand at 663.486 kb on + strand at 663.486 kb on + strand at 663.527 kb on + strand at 663.528 kb on - strand at 663.528 kb on - strand at 663.599 kb on - strand at 663.605 kb on + strand at 663.605 kb on + strand at 663.605 kb on + strand at 663.606 kb on - strand at 663.606 kb on - strand at 663.624 kb on + strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.625 kb on - strand at 663.681 kb on + strand at 663.883 kb on + strand, within Psest_0613 at 663.883 kb on + strand, within Psest_0613 at 663.883 kb on + strand, within Psest_0613 at 663.884 kb on - strand, within Psest_0613 at 663.885 kb on + strand, within Psest_0613 at 663.885 kb on + strand, within Psest_0613 at 663.885 kb on + strand, within Psest_0613 at 663.886 kb on - strand, within Psest_0613 at 663.886 kb on - strand, within Psest_0613 at 663.913 kb on - strand, within Psest_0613 at 663.915 kb on + strand, within Psest_0613 at 663.947 kb on - strand, within Psest_0613 at 663.947 kb on - strand, within Psest_0613 at 663.947 kb on - strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.950 kb on + strand, within Psest_0613 at 663.951 kb on - strand, within Psest_0613 at 663.951 kb on - strand, within Psest_0613 at 663.985 kb on + strand, within Psest_0613 at 663.986 kb on - strand, within Psest_0613 at 663.986 kb on - strand, within Psest_0613 at 663.986 kb on - strand, within Psest_0613 at 664.025 kb on - strand at 664.025 kb on - strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.042 kb on + strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.043 kb on - strand at 664.049 kb on - strand at 664.186 kb on + strand at 664.186 kb on + strand at 664.186 kb on + strand at 664.187 kb on - strand at 664.187 kb on - strand at 664.187 kb on - strand at 664.187 kb on - strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.205 kb on + strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.206 kb on - strand at 664.234 kb on + strand, within Psest_0614 at 664.235 kb on - strand, within Psest_0614 at 664.243 kb on + strand, within Psest_0614 at 664.243 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.321 kb on + strand, within Psest_0614 at 664.322 kb on - strand, within Psest_0614 at 664.322 kb on - strand, within Psest_0614 at 664.325 kb on + strand, within Psest_0614 at 664.325 kb on + strand, within Psest_0614 at 664.354 kb on + strand, within Psest_0614 at 664.480 kb on + strand, within Psest_0614 at 664.481 kb on - strand, within Psest_0614 at 664.481 kb on - strand, within Psest_0614 at 664.481 kb on - strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.495 kb on + strand, within Psest_0614 at 664.496 kb on - strand, within Psest_0614 at 664.540 kb on - strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.542 kb on + strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.543 kb on - strand, within Psest_0614 at 664.553 kb on + strand, within Psest_0614 at 664.554 kb on - strand, within Psest_0614 at 664.554 kb on - strand, within Psest_0614 at 664.699 kb on + strand, within Psest_0614 at 664.699 kb on + strand, within Psest_0614 at 664.699 kb on + strand, within Psest_0614 at 664.700 kb on - strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.789 kb on + strand, within Psest_0614 at 664.790 kb on - strand, within Psest_0614 at 664.828 kb on + strand, within Psest_0614 at 664.828 kb on + strand, within Psest_0614 at 664.829 kb on - strand, within Psest_0614 at 664.839 kb on + strand, within Psest_0614 at 664.840 kb on - strand, within Psest_0614 at 664.840 kb on - strand, within Psest_0614 at 664.909 kb on + strand, within Psest_0614 at 664.937 kb on + strand, within Psest_0614 at 664.938 kb on - strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.954 kb on + strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.955 kb on - strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.977 kb on + strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.978 kb on - strand, within Psest_0614 at 664.980 kb on - strand, within Psest_0614 at 664.980 kb on - strand, within Psest_0614 at 664.980 kb on - strand, within Psest_0614 at 665.003 kb on + strand, within Psest_0614 at 665.003 kb on + strand, within Psest_0614 at 665.004 kb on - strand, within Psest_0614 at 665.004 kb on - strand, within Psest_0614 at 665.004 kb on - strand, within Psest_0614
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 662,673 + Psest_0612 0.56 +0.4 662,673 + Psest_0612 0.56 -0.4 662,808 + Psest_0612 0.66 -1.0 662,809 - Psest_0612 0.66 -0.4 662,818 + Psest_0612 0.67 -0.4 662,818 + Psest_0612 0.67 -2.0 662,818 + Psest_0612 0.67 -1.3 662,819 - Psest_0612 0.67 -0.8 662,819 - Psest_0612 0.67 -0.4 662,819 - Psest_0612 0.67 -1.4 662,819 - Psest_0612 0.67 +0.9 662,819 - Psest_0612 0.67 +0.1 663,021 + Psest_0612 0.82 -1.9 663,021 + Psest_0612 0.82 -0.6 663,021 + Psest_0612 0.82 -2.1 663,022 - Psest_0612 0.82 -2.7 663,022 - Psest_0612 0.82 -0.5 663,022 - Psest_0612 0.82 -0.2 663,022 - Psest_0612 0.82 +0.3 663,022 - Psest_0612 0.82 -0.9 663,120 - Psest_0612 0.90 -0.7 663,133 + -1.0 663,266 - -0.7 663,266 - +0.3 663,266 - +0.5 663,266 - +1.3 663,266 - +0.1 663,266 - -0.4 663,266 - +0.6 663,270 - +1.1 663,270 - +1.1 663,270 - +0.2 663,422 + -0.6 663,455 + -1.9 663,456 - +0.3 663,456 - +0.0 663,459 + -2.0 663,486 + -0.9 663,486 + -0.8 663,527 + -0.2 663,528 - +0.6 663,528 - -0.4 663,599 - -1.3 663,605 + -1.1 663,605 + +0.3 663,605 + -1.0 663,606 - +0.4 663,606 - +0.5 663,624 + -0.3 663,625 - -4.5 663,625 - -2.0 663,625 - -1.6 663,681 + +1.0 663,883 + Psest_0613 0.60 -0.9 663,883 + Psest_0613 0.60 -1.8 663,883 + Psest_0613 0.60 +0.1 663,884 - Psest_0613 0.61 -0.7 663,885 + Psest_0613 0.61 -0.4 663,885 + Psest_0613 0.61 -0.9 663,885 + Psest_0613 0.61 +1.8 663,886 - Psest_0613 0.61 -2.6 663,886 - Psest_0613 0.61 -0.9 663,913 - Psest_0613 0.68 -0.7 663,915 + Psest_0613 0.69 -2.0 663,947 - Psest_0613 0.77 -3.4 663,947 - Psest_0613 0.77 -0.5 663,947 - Psest_0613 0.77 -1.1 663,950 + Psest_0613 0.78 -1.4 663,950 + Psest_0613 0.78 -0.9 663,950 + Psest_0613 0.78 -1.9 663,950 + Psest_0613 0.78 -1.8 663,950 + Psest_0613 0.78 -3.0 663,951 - Psest_0613 0.78 -1.0 663,951 - Psest_0613 0.78 +0.1 663,985 + Psest_0613 0.87 +0.5 663,986 - Psest_0613 0.87 -2.0 663,986 - Psest_0613 0.87 -0.9 663,986 - Psest_0613 0.87 -0.5 664,025 - -1.2 664,025 - -0.9 664,042 + -2.1 664,042 + +1.0 664,042 + -1.0 664,042 + -1.4 664,042 + -1.2 664,042 + -0.1 664,042 + -1.6 664,043 - -1.8 664,043 - -2.0 664,043 - -3.0 664,043 - -1.6 664,043 - -2.2 664,043 - -1.2 664,043 - -0.9 664,043 - +1.2 664,043 - -0.6 664,043 - -1.0 664,043 - +0.4 664,049 - -2.9 664,186 + -0.4 664,186 + +0.2 664,186 + -0.2 664,187 - +0.9 664,187 - -0.0 664,187 - -0.7 664,187 - -0.5 664,205 + -0.2 664,205 + -0.4 664,205 + +1.6 664,205 + +0.2 664,205 + +0.7 664,205 + +1.4 664,205 + -0.0 664,205 + +1.2 664,205 + -0.1 664,205 + +0.1 664,205 + +0.6 664,205 + +0.4 664,205 + -0.9 664,206 - +1.0 664,206 - +1.0 664,206 - +0.2 664,206 - -1.3 664,206 - +0.2 664,234 + Psest_0614 0.11 +0.8 664,235 - Psest_0614 0.11 -0.7 664,243 + Psest_0614 0.12 -0.8 664,243 + Psest_0614 0.12 +0.3 664,321 + Psest_0614 0.18 +1.9 664,321 + Psest_0614 0.18 +0.8 664,321 + Psest_0614 0.18 +1.4 664,321 + Psest_0614 0.18 +2.3 664,322 - Psest_0614 0.18 -2.0 664,322 - Psest_0614 0.18 -2.8 664,325 + Psest_0614 0.18 +1.0 664,325 + Psest_0614 0.18 +0.4 664,354 + Psest_0614 0.20 +0.2 664,480 + Psest_0614 0.30 -0.3 664,481 - Psest_0614 0.30 +1.5 664,481 - Psest_0614 0.30 +1.2 664,481 - Psest_0614 0.30 +0.6 664,495 + Psest_0614 0.31 -0.8 664,495 + Psest_0614 0.31 -0.8 664,495 + Psest_0614 0.31 +0.1 664,495 + Psest_0614 0.31 +2.7 664,495 + Psest_0614 0.31 +0.1 664,496 - Psest_0614 0.31 +0.5 664,540 - Psest_0614 0.34 +0.7 664,542 + Psest_0614 0.34 -0.2 664,542 + Psest_0614 0.34 -1.6 664,542 + Psest_0614 0.34 +1.9 664,542 + Psest_0614 0.34 -1.2 664,543 - Psest_0614 0.34 +1.3 664,543 - Psest_0614 0.34 +1.2 664,543 - Psest_0614 0.34 +1.0 664,543 - Psest_0614 0.34 -0.6 664,543 - Psest_0614 0.34 +0.8 664,543 - Psest_0614 0.34 +0.5 664,553 + Psest_0614 0.35 -1.1 664,554 - Psest_0614 0.35 +0.8 664,554 - Psest_0614 0.35 -0.4 664,699 + Psest_0614 0.46 -0.7 664,699 + Psest_0614 0.46 -1.5 664,699 + Psest_0614 0.46 -1.0 664,700 - Psest_0614 0.46 +0.5 664,789 + Psest_0614 0.53 -0.6 664,789 + Psest_0614 0.53 -0.8 664,789 + Psest_0614 0.53 -2.0 664,789 + Psest_0614 0.53 +0.0 664,790 - Psest_0614 0.53 +1.2 664,828 + Psest_0614 0.56 +2.5 664,828 + Psest_0614 0.56 +0.6 664,829 - Psest_0614 0.56 -0.2 664,839 + Psest_0614 0.57 -1.4 664,840 - Psest_0614 0.57 -0.3 664,840 - Psest_0614 0.57 +1.2 664,909 + Psest_0614 0.62 -0.8 664,937 + Psest_0614 0.65 -1.3 664,938 - Psest_0614 0.65 -0.1 664,954 + Psest_0614 0.66 +0.4 664,954 + Psest_0614 0.66 -0.7 664,954 + Psest_0614 0.66 -2.3 664,954 + Psest_0614 0.66 -0.6 664,954 + Psest_0614 0.66 -1.0 664,954 + Psest_0614 0.66 -0.6 664,955 - Psest_0614 0.66 -0.4 664,955 - Psest_0614 0.66 -0.9 664,955 - Psest_0614 0.66 -0.7 664,955 - Psest_0614 0.66 -0.8 664,955 - Psest_0614 0.66 -0.7 664,977 + Psest_0614 0.68 -0.5 664,977 + Psest_0614 0.68 +1.6 664,977 + Psest_0614 0.68 -0.8 664,977 + Psest_0614 0.68 -0.6 664,977 + Psest_0614 0.68 -2.1 664,977 + Psest_0614 0.68 -1.1 664,977 + Psest_0614 0.68 +0.7 664,977 + Psest_0614 0.68 -0.6 664,977 + Psest_0614 0.68 -0.2 664,977 + Psest_0614 0.68 -1.7 664,977 + Psest_0614 0.68 -0.2 664,978 - Psest_0614 0.68 +0.6 664,978 - Psest_0614 0.68 -2.0 664,978 - Psest_0614 0.68 +1.1 664,978 - Psest_0614 0.68 -0.8 664,978 - Psest_0614 0.68 -0.4 664,978 - Psest_0614 0.68 +1.1 664,980 - Psest_0614 0.68 -0.8 664,980 - Psest_0614 0.68 +0.7 664,980 - Psest_0614 0.68 -0.3 665,003 + Psest_0614 0.70 -1.6 665,003 + Psest_0614 0.70 +1.1 665,004 - Psest_0614 0.70 -0.5 665,004 - Psest_0614 0.70 -2.1 665,004 - Psest_0614 0.70 -0.6
Or see this region's nucleotide sequence