Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06120 and PGA1_c06130 are separated by 200 nucleotides PGA1_c06130 and PGA1_c06140 are separated by 19 nucleotides PGA1_c06140 and PGA1_c06150 are separated by 179 nucleotides
PGA1_c06120: PGA1_c06120 - Flp pilus assembly protein, ATPase CpaE, at 626,301 to 627,533
_c06120
PGA1_c06130: PGA1_c06130 - outer membrane protein OmpA-like protein, at 627,734 to 628,360
_c06130
PGA1_c06140: PGA1_c06140 - putative bacterial type II/III secretion system protein, at 628,380 to 629,834
_c06140
PGA1_c06150: PGA1_c06150 - Flp pilus assembly protein CpaB-like protein, at 630,014 to 630,874
_c06150
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 627.420 kb on - strand at 627.455 kb on + strand at 627.463 kb on - strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.470 kb on + strand at 627.478 kb on - strand at 627.504 kb on + strand at 627.536 kb on + strand at 627.544 kb on - strand at 627.551 kb on - strand at 627.567 kb on - strand at 627.590 kb on + strand at 627.625 kb on - strand at 627.663 kb on - strand at 627.689 kb on - strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.691 kb on + strand at 627.694 kb on - strand at 627.701 kb on + strand at 627.701 kb on + strand at 627.709 kb on - strand at 627.720 kb on - strand at 627.722 kb on + strand at 627.777 kb on + strand at 627.785 kb on - strand at 627.811 kb on + strand, within PGA1_c06130 at 627.982 kb on - strand, within PGA1_c06130 at 627.992 kb on + strand, within PGA1_c06130 at 628.000 kb on - strand, within PGA1_c06130 at 628.013 kb on + strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.136 kb on - strand, within PGA1_c06130 at 628.157 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.268 kb on + strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.291 kb on - strand, within PGA1_c06130 at 628.323 kb on + strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.331 kb on - strand at 628.333 kb on + strand at 628.413 kb on + strand at 628.476 kb on - strand at 628.508 kb on - strand at 628.518 kb on + strand at 628.553 kb on - strand, within PGA1_c06140 at 628.613 kb on - strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.680 kb on + strand, within PGA1_c06140 at 628.688 kb on - strand, within PGA1_c06140 at 628.701 kb on + strand, within PGA1_c06140 at 628.709 kb on - strand, within PGA1_c06140 at 628.735 kb on - strand, within PGA1_c06140 at 628.759 kb on + strand, within PGA1_c06140 at 628.843 kb on - strand, within PGA1_c06140 at 628.863 kb on + strand, within PGA1_c06140 at 628.890 kb on - strand, within PGA1_c06140 at 628.910 kb on - strand, within PGA1_c06140 at 628.926 kb on + strand, within PGA1_c06140 at 629.016 kb on - strand, within PGA1_c06140 at 629.053 kb on - strand, within PGA1_c06140 at 629.099 kb on - strand, within PGA1_c06140 at 629.128 kb on - strand, within PGA1_c06140 at 629.189 kb on + strand, within PGA1_c06140 at 629.214 kb on - strand, within PGA1_c06140 at 629.311 kb on - strand, within PGA1_c06140 at 629.353 kb on + strand, within PGA1_c06140 at 629.365 kb on + strand, within PGA1_c06140 at 629.378 kb on - strand, within PGA1_c06140 at 629.513 kb on + strand, within PGA1_c06140 at 629.513 kb on + strand, within PGA1_c06140 at 629.595 kb on - strand, within PGA1_c06140 at 629.668 kb on - strand, within PGA1_c06140 at 629.674 kb on + strand, within PGA1_c06140 at 629.762 kb on + strand at 629.809 kb on + strand at 629.845 kb on + strand at 629.883 kb on - strand at 629.911 kb on + strand at 629.914 kb on + strand at 629.943 kb on - strand at 630.036 kb on + strand at 630.046 kb on + strand at 630.054 kb on - strand at 630.062 kb on + strand at 630.070 kb on - strand at 630.080 kb on - strand at 630.080 kb on - strand at 630.105 kb on - strand, within PGA1_c06150 at 630.128 kb on - strand, within PGA1_c06150 at 630.134 kb on + strand, within PGA1_c06150 at 630.142 kb on - strand, within PGA1_c06150 at 630.246 kb on - strand, within PGA1_c06150 at 630.307 kb on + strand, within PGA1_c06150 at 630.322 kb on + strand, within PGA1_c06150 at 630.332 kb on + strand, within PGA1_c06150 at 630.337 kb on + strand, within PGA1_c06150 at 630.346 kb on - strand, within PGA1_c06150 at 630.413 kb on - strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.439 kb on + strand, within PGA1_c06150 at 630.451 kb on + strand, within PGA1_c06150 at 630.485 kb on + strand, within PGA1_c06150 at 630.549 kb on - strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.566 kb on + strand, within PGA1_c06150 at 630.571 kb on + strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.574 kb on - strand, within PGA1_c06150 at 630.594 kb on - strand, within PGA1_c06150 at 630.674 kb on - strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.683 kb on + strand, within PGA1_c06150 at 630.691 kb on - strand, within PGA1_c06150 at 630.707 kb on - strand, within PGA1_c06150 at 630.774 kb on + strand, within PGA1_c06150 at 630.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 627,420 - +1.1 627,455 + -3.0 627,463 - +1.5 627,470 + -0.1 627,470 + +1.9 627,470 + +1.3 627,478 - +1.4 627,504 + +1.5 627,536 + -1.3 627,544 - +0.2 627,551 - -0.7 627,567 - -0.7 627,590 + -1.6 627,625 - -0.5 627,663 - +1.2 627,689 - -1.1 627,691 + +2.5 627,691 + -1.3 627,691 + -1.7 627,694 - +1.7 627,701 + +2.1 627,701 + -0.7 627,709 - +0.3 627,720 - +2.9 627,722 + -1.3 627,777 + -0.1 627,785 - +1.0 627,811 + PGA1_c06130 0.12 +1.2 627,982 - PGA1_c06130 0.40 -0.1 627,992 + PGA1_c06130 0.41 +0.2 628,000 - PGA1_c06130 0.42 +1.1 628,013 + PGA1_c06130 0.44 -0.1 628,136 - PGA1_c06130 0.64 -0.8 628,136 - PGA1_c06130 0.64 -0.7 628,157 + PGA1_c06130 0.67 +2.1 628,268 + PGA1_c06130 0.85 -1.8 628,268 + PGA1_c06130 0.85 -0.5 628,291 - PGA1_c06130 0.89 -0.1 628,291 - PGA1_c06130 0.89 +0.3 628,323 + +1.0 628,331 - +1.3 628,331 - +0.9 628,331 - +1.1 628,333 + +1.9 628,413 + +0.1 628,476 - +0.5 628,508 - +0.6 628,518 + -1.3 628,553 - PGA1_c06140 0.12 -0.3 628,613 - PGA1_c06140 0.16 -0.7 628,680 + PGA1_c06140 0.21 -0.4 628,680 + PGA1_c06140 0.21 +1.5 628,688 - PGA1_c06140 0.21 -1.0 628,701 + PGA1_c06140 0.22 +1.4 628,709 - PGA1_c06140 0.23 +0.7 628,735 - PGA1_c06140 0.24 -2.2 628,759 + PGA1_c06140 0.26 +1.6 628,843 - PGA1_c06140 0.32 +2.2 628,863 + PGA1_c06140 0.33 +1.2 628,890 - PGA1_c06140 0.35 +1.9 628,910 - PGA1_c06140 0.36 +2.8 628,926 + PGA1_c06140 0.38 -1.0 629,016 - PGA1_c06140 0.44 -0.4 629,053 - PGA1_c06140 0.46 -0.5 629,099 - PGA1_c06140 0.49 +1.9 629,128 - PGA1_c06140 0.51 +0.6 629,189 + PGA1_c06140 0.56 +1.6 629,214 - PGA1_c06140 0.57 +0.3 629,311 - PGA1_c06140 0.64 +1.2 629,353 + PGA1_c06140 0.67 +1.4 629,365 + PGA1_c06140 0.68 +2.3 629,378 - PGA1_c06140 0.69 +1.9 629,513 + PGA1_c06140 0.78 -0.4 629,513 + PGA1_c06140 0.78 +1.9 629,595 - PGA1_c06140 0.84 +1.9 629,668 - PGA1_c06140 0.89 +1.9 629,674 + PGA1_c06140 0.89 +0.7 629,762 + +0.4 629,809 + +1.2 629,845 + -0.4 629,883 - +2.9 629,911 + +2.2 629,914 + +1.9 629,943 - +0.3 630,036 + -2.1 630,046 + -0.2 630,054 - -2.1 630,062 + -2.0 630,070 - +0.7 630,080 - +0.9 630,080 - +0.7 630,105 - PGA1_c06150 0.11 +1.4 630,128 - PGA1_c06150 0.13 +1.3 630,134 + PGA1_c06150 0.14 -1.2 630,142 - PGA1_c06150 0.15 +0.2 630,246 - PGA1_c06150 0.27 +1.3 630,307 + PGA1_c06150 0.34 +0.4 630,322 + PGA1_c06150 0.36 -1.5 630,332 + PGA1_c06150 0.37 +0.7 630,337 + PGA1_c06150 0.38 -1.5 630,346 - PGA1_c06150 0.39 -0.1 630,413 - PGA1_c06150 0.46 -2.7 630,439 + PGA1_c06150 0.49 +1.3 630,439 + PGA1_c06150 0.49 +0.7 630,451 + PGA1_c06150 0.51 -0.0 630,485 + PGA1_c06150 0.55 +0.7 630,549 - PGA1_c06150 0.62 +1.7 630,566 + PGA1_c06150 0.64 -1.1 630,566 + PGA1_c06150 0.64 +1.5 630,571 + PGA1_c06150 0.65 +0.2 630,574 - PGA1_c06150 0.65 +1.0 630,574 - PGA1_c06150 0.65 +0.4 630,594 - PGA1_c06150 0.67 +1.4 630,674 - PGA1_c06150 0.77 -1.8 630,683 + PGA1_c06150 0.78 -0.7 630,683 + PGA1_c06150 0.78 -0.4 630,691 - PGA1_c06150 0.79 +0.5 630,707 - PGA1_c06150 0.80 -3.1 630,774 + PGA1_c06150 0.88 -2.1 630,830 - +0.9
Or see this region's nucleotide sequence