Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0596 and Psest_0597 overlap by 4 nucleotides Psest_0597 and Psest_0598 overlap by 4 nucleotides
Psest_0596: Psest_0596 - heavy metal efflux pump (cobalt-zinc-cadmium), at 644,932 to 648,096
_0596
Psest_0597: Psest_0597 - RND family efflux transporter, MFP subunit, at 648,093 to 649,544
_0597
Psest_0598: Psest_0598 - Outer membrane protein, at 649,541 to 650,794
_0598
Position (kb) 648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 647.126 kb on + strand, within Psest_0596 at 647.126 kb on + strand, within Psest_0596 at 647.126 kb on + strand, within Psest_0596 at 647.126 kb on + strand, within Psest_0596 at 647.126 kb on + strand, within Psest_0596 at 647.127 kb on - strand, within Psest_0596 at 647.249 kb on - strand, within Psest_0596 at 647.391 kb on - strand, within Psest_0596 at 647.391 kb on - strand, within Psest_0596 at 647.538 kb on - strand, within Psest_0596 at 647.558 kb on - strand, within Psest_0596 at 647.600 kb on + strand, within Psest_0596 at 647.672 kb on + strand, within Psest_0596 at 647.672 kb on + strand, within Psest_0596 at 647.672 kb on + strand, within Psest_0596 at 647.672 kb on + strand, within Psest_0596 at 647.673 kb on - strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.678 kb on + strand, within Psest_0596 at 647.760 kb on - strand, within Psest_0596 at 647.760 kb on - strand, within Psest_0596 at 647.787 kb on - strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.816 kb on + strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.817 kb on - strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.822 kb on + strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.823 kb on - strand at 647.827 kb on - strand at 647.844 kb on - strand at 647.897 kb on + strand at 647.897 kb on + strand at 647.898 kb on - strand at 648.083 kb on - strand at 648.083 kb on - strand at 648.083 kb on - strand at 648.302 kb on + strand, within Psest_0597 at 648.302 kb on + strand, within Psest_0597 at 648.302 kb on + strand, within Psest_0597 at 648.302 kb on + strand, within Psest_0597 at 648.302 kb on + strand, within Psest_0597 at 648.332 kb on + strand, within Psest_0597 at 648.332 kb on + strand, within Psest_0597 at 648.333 kb on - strand, within Psest_0597 at 648.333 kb on - strand, within Psest_0597 at 648.333 kb on - strand, within Psest_0597 at 648.671 kb on + strand, within Psest_0597 at 648.672 kb on - strand, within Psest_0597 at 648.696 kb on + strand, within Psest_0597 at 648.697 kb on - strand, within Psest_0597 at 648.699 kb on + strand, within Psest_0597 at 648.700 kb on - strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.816 kb on + strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.817 kb on - strand, within Psest_0597 at 648.833 kb on + strand, within Psest_0597 at 648.834 kb on - strand, within Psest_0597 at 648.861 kb on + strand, within Psest_0597 at 648.906 kb on + strand, within Psest_0597 at 648.907 kb on - strand, within Psest_0597 at 648.954 kb on + strand, within Psest_0597 at 648.955 kb on - strand, within Psest_0597 at 648.955 kb on - strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.051 kb on + strand, within Psest_0597 at 649.052 kb on - strand, within Psest_0597 at 649.052 kb on - strand, within Psest_0597 at 649.139 kb on - strand, within Psest_0597 at 649.349 kb on + strand, within Psest_0597 at 649.377 kb on - strand, within Psest_0597 at 649.400 kb on + strand at 649.408 kb on + strand at 649.408 kb on + strand at 649.408 kb on + strand at 649.409 kb on - strand at 649.414 kb on + strand at 649.414 kb on + strand at 649.415 kb on - strand at 649.490 kb on + strand at 649.490 kb on + strand at 649.553 kb on - strand at 649.612 kb on + strand at 649.612 kb on + strand at 649.612 kb on + strand at 649.613 kb on - strand at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.730 kb on + strand, within Psest_0598 at 649.731 kb on - strand, within Psest_0598 at 649.774 kb on - strand, within Psest_0598 at 649.806 kb on + strand, within Psest_0598 at 649.806 kb on + strand, within Psest_0598 at 649.807 kb on - strand, within Psest_0598 at 649.962 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.085 kb on + strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.086 kb on - strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.089 kb on + strand, within Psest_0598 at 650.090 kb on - strand, within Psest_0598 at 650.141 kb on + strand, within Psest_0598 at 650.141 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.243 kb on + strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.244 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.320 kb on - strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.339 kb on + strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.340 kb on - strand, within Psest_0598 at 650.440 kb on + strand, within Psest_0598 at 650.441 kb on - strand, within Psest_0598
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 647,126 + Psest_0596 0.69 -0.8 647,126 + Psest_0596 0.69 -0.2 647,126 + Psest_0596 0.69 +0.0 647,126 + Psest_0596 0.69 -3.4 647,126 + Psest_0596 0.69 -0.9 647,127 - Psest_0596 0.69 +0.2 647,249 - Psest_0596 0.73 +0.8 647,391 - Psest_0596 0.78 +0.5 647,391 - Psest_0596 0.78 -1.4 647,538 - Psest_0596 0.82 +0.4 647,558 - Psest_0596 0.83 +0.7 647,600 + Psest_0596 0.84 -0.6 647,672 + Psest_0596 0.87 -2.2 647,672 + Psest_0596 0.87 +0.1 647,672 + Psest_0596 0.87 -0.6 647,672 + Psest_0596 0.87 -0.0 647,673 - Psest_0596 0.87 -0.6 647,678 + Psest_0596 0.87 -0.9 647,678 + Psest_0596 0.87 -0.6 647,678 + Psest_0596 0.87 +0.5 647,678 + Psest_0596 0.87 -0.5 647,678 + Psest_0596 0.87 +0.3 647,678 + Psest_0596 0.87 +1.0 647,678 + Psest_0596 0.87 +0.0 647,678 + Psest_0596 0.87 -1.2 647,678 + Psest_0596 0.87 +0.8 647,760 - Psest_0596 0.89 -0.8 647,760 - Psest_0596 0.89 -1.6 647,787 - -0.7 647,816 + -0.6 647,816 + -0.6 647,816 + -2.1 647,816 + +1.1 647,816 + +0.4 647,816 + +0.0 647,816 + +0.0 647,816 + -0.8 647,816 + -1.3 647,817 - -0.7 647,817 - -0.3 647,817 - -2.8 647,817 - -1.2 647,817 - +0.4 647,817 - -0.4 647,817 - -0.5 647,817 - -0.1 647,817 - +0.1 647,817 - -0.1 647,817 - -0.5 647,817 - -0.1 647,822 + -1.9 647,822 + -1.8 647,822 + -1.1 647,822 + -0.9 647,822 + -0.7 647,822 + -0.4 647,822 + +0.3 647,822 + +0.8 647,822 + +0.8 647,822 + +0.6 647,822 + +0.2 647,822 + +0.8 647,823 - -0.2 647,823 - +0.6 647,823 - +0.6 647,823 - -3.3 647,823 - -1.5 647,823 - -2.5 647,823 - -0.7 647,823 - -0.6 647,823 - +0.1 647,823 - -1.1 647,823 - -0.5 647,823 - -0.8 647,823 - +0.7 647,823 - -0.4 647,823 - -0.3 647,823 - -1.0 647,823 - +0.0 647,827 - -0.4 647,844 - +0.2 647,897 + -1.4 647,897 + -0.8 647,898 - -0.5 648,083 - +2.0 648,083 - -0.0 648,083 - -0.6 648,302 + Psest_0597 0.14 -2.1 648,302 + Psest_0597 0.14 +0.1 648,302 + Psest_0597 0.14 -0.8 648,302 + Psest_0597 0.14 -1.4 648,302 + Psest_0597 0.14 +0.8 648,332 + Psest_0597 0.16 -1.3 648,332 + Psest_0597 0.16 -0.8 648,333 - Psest_0597 0.17 -1.0 648,333 - Psest_0597 0.17 -0.6 648,333 - Psest_0597 0.17 -1.5 648,671 + Psest_0597 0.40 -3.5 648,672 - Psest_0597 0.40 -0.6 648,696 + Psest_0597 0.42 -2.5 648,697 - Psest_0597 0.42 -2.0 648,699 + Psest_0597 0.42 -3.2 648,700 - Psest_0597 0.42 +2.4 648,816 + Psest_0597 0.50 -1.3 648,816 + Psest_0597 0.50 -0.2 648,816 + Psest_0597 0.50 -2.7 648,817 - Psest_0597 0.50 +1.2 648,817 - Psest_0597 0.50 +1.0 648,817 - Psest_0597 0.50 -2.7 648,833 + Psest_0597 0.51 +0.4 648,834 - Psest_0597 0.51 -1.4 648,861 + Psest_0597 0.53 -1.4 648,906 + Psest_0597 0.56 -0.9 648,907 - Psest_0597 0.56 +1.5 648,954 + Psest_0597 0.59 -0.1 648,955 - Psest_0597 0.59 -2.5 648,955 - Psest_0597 0.59 +0.4 649,051 + Psest_0597 0.66 -1.4 649,051 + Psest_0597 0.66 -1.7 649,051 + Psest_0597 0.66 +0.9 649,052 - Psest_0597 0.66 -1.5 649,052 - Psest_0597 0.66 +0.6 649,139 - Psest_0597 0.72 -0.3 649,349 + Psest_0597 0.87 -0.4 649,377 - Psest_0597 0.88 +1.0 649,400 + +0.1 649,408 + +0.2 649,408 + -1.5 649,408 + +0.9 649,409 - +0.1 649,414 + -0.2 649,414 + -3.6 649,415 - -1.2 649,490 + +0.1 649,490 + +1.8 649,553 - -2.5 649,612 + +0.4 649,612 + -1.3 649,612 + -0.5 649,613 - +0.1 649,730 + Psest_0598 0.15 +0.6 649,730 + Psest_0598 0.15 +0.6 649,730 + Psest_0598 0.15 -1.0 649,730 + Psest_0598 0.15 -0.1 649,730 + Psest_0598 0.15 -0.4 649,731 - Psest_0598 0.15 -0.4 649,774 - Psest_0598 0.19 -2.1 649,806 + Psest_0598 0.21 -0.2 649,806 + Psest_0598 0.21 +0.3 649,807 - Psest_0598 0.21 -1.1 649,962 + Psest_0598 0.34 -0.2 650,085 + Psest_0598 0.43 +0.1 650,085 + Psest_0598 0.43 +1.2 650,085 + Psest_0598 0.43 -1.1 650,085 + Psest_0598 0.43 -0.1 650,085 + Psest_0598 0.43 +1.0 650,086 - Psest_0598 0.43 -3.0 650,086 - Psest_0598 0.43 -1.5 650,086 - Psest_0598 0.43 -1.2 650,089 + Psest_0598 0.44 -0.8 650,089 + Psest_0598 0.44 -0.5 650,089 + Psest_0598 0.44 -0.3 650,089 + Psest_0598 0.44 -0.3 650,090 - Psest_0598 0.44 -0.8 650,141 + Psest_0598 0.48 -1.7 650,141 + Psest_0598 0.48 -1.6 650,243 + Psest_0598 0.56 -0.4 650,243 + Psest_0598 0.56 -3.1 650,243 + Psest_0598 0.56 -0.9 650,244 - Psest_0598 0.56 -1.7 650,244 - Psest_0598 0.56 -1.3 650,244 - Psest_0598 0.56 -3.7 650,244 - Psest_0598 0.56 -3.6 650,244 - Psest_0598 0.56 -1.1 650,244 - Psest_0598 0.56 -1.9 650,320 - Psest_0598 0.62 -2.4 650,320 - Psest_0598 0.62 +0.7 650,320 - Psest_0598 0.62 -1.1 650,339 + Psest_0598 0.64 -0.2 650,339 + Psest_0598 0.64 -1.8 650,339 + Psest_0598 0.64 -0.2 650,339 + Psest_0598 0.64 -0.1 650,340 - Psest_0598 0.64 +0.3 650,340 - Psest_0598 0.64 -0.6 650,340 - Psest_0598 0.64 -1.9 650,440 + Psest_0598 0.72 -1.5 650,441 - Psest_0598 0.72 -0.1
Or see this region's nucleotide sequence