Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0556

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0555 and Psest_0556 are separated by 329 nucleotidesPsest_0556 and Psest_0557 are separated by 368 nucleotides Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666 _0555 Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724 _0556 Psest_0557: Psest_0557 - Urease (EC 3.5.1.5) (from data), at 611,093 to 612,793 _0557 Position (kb) 609 610 611Strain fitness (log2 ratio) -2 -1 0 1 2at 609.092 kb on + strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.093 kb on - strand, within Psest_0555at 609.158 kb on - strand, within Psest_0555at 609.182 kb on + strand, within Psest_0555at 609.183 kb on - strand, within Psest_0555at 609.284 kb on + strand, within Psest_0555at 609.284 kb on + strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.395 kb on + strand, within Psest_0555at 609.396 kb on - strand, within Psest_0555at 609.396 kb on - strand, within Psest_0555at 609.396 kb on - strand, within Psest_0555at 609.492 kb on - strand, within Psest_0555at 609.562 kb on + strandat 609.562 kb on + strandat 609.563 kb on - strandat 609.619 kb on - strandat 609.620 kb on + strandat 609.620 kb on + strandat 609.620 kb on + strandat 609.620 kb on + strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.786 kb on + strandat 609.787 kb on - strandat 609.787 kb on - strandat 609.787 kb on - strandat 609.820 kb on + strandat 609.936 kb on + strandat 609.997 kb on + strandat 609.998 kb on - strandat 610.052 kb on - strandat 610.429 kb on + strand, within Psest_0556at 610.430 kb on - strand, within Psest_0556at 610.573 kb on + strand, within Psest_0556at 610.573 kb on + strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.606 kb on + strand, within Psest_0556at 610.869 kb on - strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.902 kb on + strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.903 kb on - strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.906 kb on + strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 610.907 kb on - strandat 611.106 kb on + strandat 611.106 kb on + strandat 611.107 kb on - strandat 611.175 kb on + strandat 611.175 kb on + strandat 611.175 kb on + strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.176 kb on - strandat 611.209 kb on - strandat 611.255 kb on + strandat 611.329 kb on + strand, within Psest_0557at 611.329 kb on + strand, within Psest_0557at 611.330 kb on - strand, within Psest_0557at 611.330 kb on - strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.577 kb on + strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.578 kb on - strand, within Psest_0557at 611.589 kb on + strand, within Psest_0557at 611.590 kb on - strand, within Psest_0557at 611.590 kb on - strand, within Psest_0557at 611.590 kb on - strand, within Psest_0557

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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609,092 + Psest_0555 0.61 -2.6
609,092 + Psest_0555 0.61 -0.6
609,092 + Psest_0555 0.61 +0.3
609,093 - Psest_0555 0.61 +0.3
609,158 - Psest_0555 0.65 +1.5
609,182 + Psest_0555 0.67 +0.5
609,183 - Psest_0555 0.67 -0.7
609,284 + Psest_0555 0.74 +0.1
609,284 + Psest_0555 0.74 -1.0
609,285 - Psest_0555 0.74 +0.2
609,285 - Psest_0555 0.74 +1.1
609,285 - Psest_0555 0.74 +1.4
609,285 - Psest_0555 0.74 -1.0
609,285 - Psest_0555 0.74 +0.3
609,285 - Psest_0555 0.74 +2.1
609,285 - Psest_0555 0.74 +0.5
609,285 - Psest_0555 0.74 +1.9
609,285 - Psest_0555 0.74 -0.6
609,395 + Psest_0555 0.82 +1.3
609,396 - Psest_0555 0.82 -0.3
609,396 - Psest_0555 0.82 +0.7
609,396 - Psest_0555 0.82 +0.3
609,492 - Psest_0555 0.88 -0.5
609,562 + -0.2
609,562 + +0.2
609,563 - -1.1
609,619 - +0.6
609,620 + -0.6
609,620 + +0.9
609,620 + -1.5
609,620 + -0.0
609,621 - -1.3
609,621 - -0.4
609,621 - +1.3
609,621 - -2.0
609,621 - +0.9
609,621 - -0.7
609,621 - -0.5
609,621 - -1.1
609,621 - -0.5
609,621 - -0.7
609,621 - -0.6
609,621 - +0.3
609,786 + +1.1
609,787 - -0.9
609,787 - -0.4
609,787 - -1.5
609,820 + +1.3
609,936 + +0.9
609,997 + -1.7
609,998 - +1.0
610,052 - +1.1
610,429 + Psest_0556 0.59 +1.6
610,430 - Psest_0556 0.60 +0.4
610,573 + Psest_0556 0.79 -0.6
610,573 + Psest_0556 0.79 -0.6
610,574 - Psest_0556 0.79 -2.0
610,574 - Psest_0556 0.79 -0.3
610,574 - Psest_0556 0.79 -0.6
610,574 - Psest_0556 0.79 -0.9
610,574 - Psest_0556 0.79 +0.5
610,579 + Psest_0556 0.80 -0.6
610,579 + Psest_0556 0.80 -0.5
610,579 + Psest_0556 0.80 -1.5
610,579 + Psest_0556 0.80 -1.0
610,579 + Psest_0556 0.80 -0.3
610,579 + Psest_0556 0.80 -1.1
610,579 + Psest_0556 0.80 -1.5
610,579 + Psest_0556 0.80 -0.3
610,579 + Psest_0556 0.80 -1.6
610,579 + Psest_0556 0.80 -1.2
610,579 + Psest_0556 0.80 -1.0
610,580 - Psest_0556 0.80 -0.6
610,580 - Psest_0556 0.80 -1.6
610,580 - Psest_0556 0.80 +1.0
610,580 - Psest_0556 0.80 -2.1
610,580 - Psest_0556 0.80 +0.3
610,580 - Psest_0556 0.80 +0.0
610,580 - Psest_0556 0.80 -2.1
610,606 + Psest_0556 0.84 -0.1
610,869 - +0.0
610,902 + +0.5
610,902 + -0.1
610,902 + -0.3
610,902 + +0.3
610,902 + -1.0
610,903 - +0.3
610,903 - -0.1
610,903 - -1.7
610,903 - -1.5
610,903 - -0.4
610,906 + -0.6
610,906 + -1.4
610,906 + +0.4
610,906 + -0.5
610,906 + +2.2
610,906 + +1.4
610,906 + -1.4
610,906 + +1.2
610,906 + -0.4
610,907 - +2.6
610,907 - +0.5
610,907 - +0.7
610,907 - +0.3
610,907 - -0.2
610,907 - -0.5
611,106 + -0.3
611,106 + +0.3
611,107 - -0.1
611,175 + -0.4
611,175 + +0.2
611,175 + +0.0
611,176 - -0.8
611,176 - -0.1
611,176 - +0.2
611,176 - +2.0
611,176 - +0.6
611,176 - +0.3
611,209 - -0.8
611,255 + +0.9
611,329 + Psest_0557 0.14 -0.3
611,329 + Psest_0557 0.14 +1.3
611,330 - Psest_0557 0.14 -0.1
611,330 - Psest_0557 0.14 -1.1
611,577 + Psest_0557 0.28 +0.7
611,577 + Psest_0557 0.28 +0.1
611,577 + Psest_0557 0.28 +0.4
611,577 + Psest_0557 0.28 +0.5
611,577 + Psest_0557 0.28 +0.6
611,577 + Psest_0557 0.28 +0.5
611,577 + Psest_0557 0.28 +1.2
611,578 - Psest_0557 0.29 -1.2
611,578 - Psest_0557 0.29 -0.3
611,578 - Psest_0557 0.29 -2.2
611,578 - Psest_0557 0.29 +0.7
611,578 - Psest_0557 0.29 -2.2
611,578 - Psest_0557 0.29 +0.6
611,578 - Psest_0557 0.29 -0.5
611,578 - Psest_0557 0.29 +0.9
611,578 - Psest_0557 0.29 -0.1
611,589 + Psest_0557 0.29 +0.2
611,590 - Psest_0557 0.29 -1.9
611,590 - Psest_0557 0.29 -1.8
611,590 - Psest_0557 0.29 +0.3

Or see this region's nucleotide sequence