Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4389

Experiment: Fusidic 0.016 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Fusidic 0.016 mg/ml
7,958	-				+0.5
7,958	-				-2.7
7,958	-				-3.4
7,958	-				-2.4
7,958	-				-0.8
7,958	-				-3.7
7,958	-				-0.6
7,958	-				+0.2
7,958	-				-2.7
7,958	-				-1.3
7,958	-				-2.8
7,958	-				-0.8
7,971	-				-0.2
7,992	+				+0.2
7,992	+				-1.4
7,992	+				-3.4
8,053	-				-0.1
8,066	-				+0.5
8,102	+				-1.1
8,103	-				-2.7
8,103	-				-2.0
8,103	-				-1.4
8,103	-				-3.0
8,103	-				-5.2
8,103	-				-1.5
8,103	-				-4.1
8,103	-				-1.3
8,103	-				-1.8
8,105	-				-1.8
8,123	-				-3.1
8,236	-				+0.2
8,244	+				-4.1
8,245	-				+0.4
8,335	+				+0.0
8,335	+				-0.9
8,335	+				+0.1
8,335	+				+1.0
8,335	+				+1.3
8,335	+				-0.2
8,335	+				-1.3
8,335	+				-0.0
8,335	+				-0.5
8,335	+				+0.7
8,335	+				+0.7
8,335	+				-0.8
8,335	+				+0.4
8,335	+				+1.0
8,335	+				+0.1
8,335	+				-1.1
8,335	+				-0.4
8,335	+				-2.7
8,336	-				+0.0
8,336	-				+0.8
8,336	-				+0.1
8,336	-				-1.0
8,336	-				-2.4
8,336	-				-0.8
8,336	-				+1.0
8,336	-				+0.2
8,336	-				+0.2
8,336	-				-4.1
8,336	-				+0.1
8,336	-				+0.5
8,336	-				+1.3
8,336	-				-0.8
8,357	+				-0.9
8,357	+				-3.4
8,357	+				-1.3
8,358	-				+0.5
8,358	-				-2.2
8,358	-				+0.6
8,413	+		Psest_4389	0.11	-2.6
8,413	+		Psest_4389	0.11	-2.2
8,413	+		Psest_4389	0.11	-1.0
8,413	+		Psest_4389	0.11	-0.9
8,413	+		Psest_4389	0.11	-2.1
8,414	-		Psest_4389	0.11	+1.1
8,414	-		Psest_4389	0.11	-3.4
8,434	+		Psest_4389	0.12	-0.4
8,434	+		Psest_4389	0.12	+0.8
8,434	+		Psest_4389	0.12	+0.8
8,435	-		Psest_4389	0.12	-0.4
8,435	-		Psest_4389	0.12	+0.2
8,435	-		Psest_4389	0.12	-1.0
8,435	-		Psest_4389	0.12	-2.8
8,456	+		Psest_4389	0.13	-0.7
8,456	+		Psest_4389	0.13	+0.2
8,456	+		Psest_4389	0.13	-0.8
8,456	+		Psest_4389	0.13	-1.5
8,456	+		Psest_4389	0.13	-2.8
8,457	-		Psest_4389	0.13	-0.2
8,457	-		Psest_4389	0.13	-1.4
8,457	-		Psest_4389	0.13	-1.3
8,457	-		Psest_4389	0.13	+0.7
8,457	-		Psest_4389	0.13	-1.5
8,457	-		Psest_4389	0.13	-1.8
8,457	-		Psest_4389	0.13	-1.6
8,481	+		Psest_4389	0.15	-3.1
8,482	-		Psest_4389	0.15	-0.5
8,533	+		Psest_4389	0.18	-0.8
8,533	+		Psest_4389	0.18	-2.2
8,533	+		Psest_4389	0.18	-0.3
8,533	+		Psest_4389	0.18	-1.2
8,534	-		Psest_4389	0.18	-0.0
8,534	-		Psest_4389	0.18	+0.2
8,536	-		Psest_4389	0.18	+0.1
8,553	-		Psest_4389	0.19	+1.4
8,558	-		Psest_4389	0.19	-2.8
8,558	-		Psest_4389	0.19	+0.4
8,569	+		Psest_4389	0.20	-4.2
8,572	+		Psest_4389	0.20	-0.1
8,576	-		Psest_4389	0.20	-0.6
8,576	-		Psest_4389	0.20	-2.8
8,734	+		Psest_4389	0.30	-1.8
8,764	+		Psest_4389	0.32	-3.4
8,764	+		Psest_4389	0.32	+0.4
8,765	-		Psest_4389	0.32	-1.7
8,765	-		Psest_4389	0.32	-0.8
8,765	-		Psest_4389	0.32	-0.0
8,765	-		Psest_4389	0.32	-0.4
8,765	-		Psest_4389	0.32	-0.6
8,768	+		Psest_4389	0.32	+0.2
8,768	+		Psest_4389	0.32	-2.6
8,768	+		Psest_4389	0.32	-1.8
8,769	-		Psest_4389	0.32	-1.1
8,769	-		Psest_4389	0.32	-1.0
8,769	-		Psest_4389	0.32	-3.4
8,887	+		Psest_4389	0.39	-4.1
8,887	+		Psest_4389	0.39	+0.2
8,893	+		Psest_4389	0.39	-2.5
8,893	+		Psest_4389	0.39	-2.4
8,894	-		Psest_4389	0.39	-1.8
8,896	+		Psest_4389	0.39	+2.0
8,896	+		Psest_4389	0.39	-1.3
8,896	+		Psest_4389	0.39	-3.8
8,896	+		Psest_4389	0.39	-1.3
8,896	+		Psest_4389	0.39	-0.8
8,896	+		Psest_4389	0.39	-0.7
8,897	-		Psest_4389	0.39	-0.8
8,897	-		Psest_4389	0.39	-0.5
8,897	-		Psest_4389	0.39	+0.7
8,897	-		Psest_4389	0.39	+0.1
8,897	-		Psest_4389	0.39	-0.0
8,897	-		Psest_4389	0.39	-2.9
8,923	+		Psest_4389	0.41	-1.2
8,923	+		Psest_4389	0.41	-0.8
8,923	+		Psest_4389	0.41	-2.8
8,924	-		Psest_4389	0.41	+2.0
8,944	+		Psest_4389	0.42	-0.2
8,945	-		Psest_4389	0.42	-2.8
9,004	+		Psest_4389	0.46	-3.9
9,004	+		Psest_4389	0.46	-3.4
9,054	+		Psest_4389	0.49	-3.1
9,054	+		Psest_4389	0.49	+1.0
9,054	+		Psest_4389	0.49	-2.8
9,201	+		Psest_4389	0.58	-0.5
9,201	+		Psest_4389	0.58	-0.4
9,250	+		Psest_4389	0.60	+0.4
9,250	+		Psest_4389	0.60	-2.8
9,251	-		Psest_4389	0.61	-2.8
9,251	-		Psest_4389	0.61	-3.2
9,251	-		Psest_4389	0.61	-1.1
9,268	+		Psest_4389	0.62	+0.1
9,268	+		Psest_4389	0.62	+0.5
9,272	+		Psest_4389	0.62	-0.4
9,272	+		Psest_4389	0.62	-0.2
9,273	-		Psest_4389	0.62	-3.1
9,408	+		Psest_4389	0.70	-0.3
9,408	+		Psest_4389	0.70	-1.2
9,408	+		Psest_4389	0.70	-1.0
9,408	+		Psest_4389	0.70	-0.6
9,409	-		Psest_4389	0.70	-2.2
9,421	+		Psest_4389	0.71	+0.1
9,421	+		Psest_4389	0.71	+0.4
9,421	+		Psest_4389	0.71	-0.4
9,421	+		Psest_4389	0.71	+0.6
9,421	+		Psest_4389	0.71	+0.1
9,421	+		Psest_4389	0.71	-1.8
9,421	+		Psest_4389	0.71	-1.3
9,421	+		Psest_4389	0.71	-1.1
9,421	+		Psest_4389	0.71	-1.5
9,421	+		Psest_4389	0.71	+1.8
9,421	+		Psest_4389	0.71	-2.4
9,421	+		Psest_4389	0.71	-0.4
9,421	+		Psest_4389	0.71	-0.3
9,421	+		Psest_4389	0.71	+0.7
9,421	+		Psest_4389	0.71	+0.6
9,422	-		Psest_4389	0.71	-1.4
9,422	-		Psest_4389	0.71	-0.6
9,422	-		Psest_4389	0.71	-1.6
9,422	-		Psest_4389	0.71	-1.8
9,422	-		Psest_4389	0.71	-4.2
9,422	-		Psest_4389	0.71	-1.3
9,422	-		Psest_4389	0.71	+0.1
9,422	-		Psest_4389	0.71	-2.2
9,422	-		Psest_4389	0.71	-1.7
9,422	-		Psest_4389	0.71	-1.1
9,422	-		Psest_4389	0.71	-1.9
9,422	-		Psest_4389	0.71	-3.2
9,422	-		Psest_4389	0.71	-1.9
9,422	-		Psest_4389	0.71	+0.2
9,422	-		Psest_4389	0.71	-2.5
9,422	-		Psest_4389	0.71	-1.5
9,422	-		Psest_4389	0.71	-2.1
9,422	-		Psest_4389	0.71	-1.2
9,422	-		Psest_4389	0.71	-1.5
9,422	-		Psest_4389	0.71	-1.1
9,453	+		Psest_4389	0.73	-0.3
9,453	+		Psest_4389	0.73	-0.0
9,453	+		Psest_4389	0.73	-3.8
9,453	+		Psest_4389	0.73	-0.2
9,453	+		Psest_4389	0.73	+0.1
9,489	+		Psest_4389	0.75	-0.3
9,489	+		Psest_4389	0.75	-0.5
9,489	+		Psest_4389	0.75	-0.6
9,489	+		Psest_4389	0.75	-1.1
9,489	+		Psest_4389	0.75	+0.5
9,489	+		Psest_4389	0.75	-0.6
9,489	+		Psest_4389	0.75	-0.0
9,489	+		Psest_4389	0.75	-1.8
9,489	+		Psest_4389	0.75	-2.2
9,489	+		Psest_4389	0.75	-2.4
9,489	+		Psest_4389	0.75	-0.3
9,489	+		Psest_4389	0.75	-0.5
9,489	+		Psest_4389	0.75	-0.1
9,489	+		Psest_4389	0.75	+0.4
9,489	+		Psest_4389	0.75	-0.4
9,489	+		Psest_4389	0.75	-3.4
9,489	+		Psest_4389	0.75	+1.0
9,490	-		Psest_4389	0.75	-1.6
9,490	-		Psest_4389	0.75	-1.0
9,493	+		Psest_4389	0.75	+0.2
9,493	+		Psest_4389	0.75	-1.5
9,493	+		Psest_4389	0.75	-0.4
9,493	+		Psest_4389	0.75	+0.0
9,493	+		Psest_4389	0.75	-0.3
9,493	+		Psest_4389	0.75	+1.7
9,493	+		Psest_4389	0.75	+0.6
9,513	+		Psest_4389	0.76	-0.6
9,513	+		Psest_4389	0.76	+0.2
9,513	+		Psest_4389	0.76	+0.2
9,513	+		Psest_4389	0.76	-0.5
9,513	+		Psest_4389	0.76	-0.7
9,513	+		Psest_4389	0.76	-1.8
9,513	+		Psest_4389	0.76	-0.4
9,513	+		Psest_4389	0.76	-2.2
9,513	+		Psest_4389	0.76	-1.8
9,513	+		Psest_4389	0.76	-0.5
9,513	+		Psest_4389	0.76	-0.5
9,514	-		Psest_4389	0.76	-1.6
9,549	+		Psest_4389	0.78	-1.3
9,549	+		Psest_4389	0.78	+0.0
9,549	+		Psest_4389	0.78	-0.7
9,549	+		Psest_4389	0.78	-0.9
9,549	+		Psest_4389	0.78	-0.2
9,549	+		Psest_4389	0.78	+0.0
9,549	+		Psest_4389	0.78	-3.6
9,549	+		Psest_4389	0.78	+0.6
9,549	+		Psest_4389	0.78	+1.1
9,549	+		Psest_4389	0.78	-1.6
9,549	+		Psest_4389	0.78	-1.4
9,549	+		Psest_4389	0.78	-1.2
9,549	+		Psest_4389	0.78	+0.2
9,549	+		Psest_4389	0.78	-0.8
9,549	+		Psest_4389	0.78	-0.2
9,549	+		Psest_4389	0.78	+0.5
9,549	+		Psest_4389	0.78	-0.4
9,549	+		Psest_4389	0.78	-1.4
9,549	+		Psest_4389	0.78	-0.5
9,549	+		Psest_4389	0.78	-0.3
9,549	+		Psest_4389	0.78	+0.7
9,549	+		Psest_4389	0.78	-0.1
9,549	+		Psest_4389	0.78	-2.4
9,549	+		Psest_4389	0.78	-0.7
9,549	+		Psest_4389	0.78	+0.2
9,549	+		Psest_4389	0.78	+0.1
9,549	+		Psest_4389	0.78	+1.7
9,549	+		Psest_4389	0.78	+0.5
9,549	+		Psest_4389	0.78	+0.1
9,549	+		Psest_4389	0.78	+1.0
9,549	+		Psest_4389	0.78	-0.2
9,549	+		Psest_4389	0.78	+0.4
9,549	+		Psest_4389	0.78	-0.8
9,549	+		Psest_4389	0.78	+0.0
9,549	+		Psest_4389	0.78	-0.1
9,549	+		Psest_4389	0.78	+0.1
9,549	+		Psest_4389	0.78	-0.4
9,549	+		Psest_4389	0.78	+1.2
9,549	+		Psest_4389	0.78	-0.2
9,549	+		Psest_4389	0.78	+1.4
9,549	+		Psest_4389	0.78	-3.1
9,549	+		Psest_4389	0.78	+0.8
9,549	+		Psest_4389	0.78	+0.4
9,549	+		Psest_4389	0.78	-0.3
9,549	+		Psest_4389	0.78	-0.8
9,549	+		Psest_4389	0.78	+0.1
9,549	+		Psest_4389	0.78	+1.1
9,549	+		Psest_4389	0.78	-0.6
9,549	+		Psest_4389	0.78	-1.8
9,550	-		Psest_4389	0.78	-0.7
9,550	-		Psest_4389	0.78	-0.0
9,550	-		Psest_4389	0.78	-0.6
9,550	-		Psest_4389	0.78	+1.0
9,550	-		Psest_4389	0.78	-1.8
9,550	-		Psest_4389	0.78	-0.8
9,550	-		Psest_4389	0.78	-1.3
9,550	-		Psest_4389	0.78	-2.4
9,550	-		Psest_4389	0.78	-1.7
9,550	-		Psest_4389	0.78	-3.4
9,550	-		Psest_4389	0.78	+0.1
9,550	-		Psest_4389	0.78	-1.2
9,616	+		Psest_4389	0.82	-1.0
9,627	+		Psest_4389	0.83	-1.4
9,628	-		Psest_4389	0.83	-1.7
9,628	-		Psest_4389	0.83	-0.1
9,706	+		Psest_4389	0.88	-0.0
9,706	+		Psest_4389	0.88	+0.1
9,706	+		Psest_4389	0.88	+0.0
9,706	+		Psest_4389	0.88	-0.3
9,707	-		Psest_4389	0.88	-0.8
9,707	-		Psest_4389	0.88	-0.4
9,707	-		Psest_4389	0.88	-0.2
9,707	-		Psest_4389	0.88	-0.0
9,707	-		Psest_4389	0.88	+0.5
9,727	+		Psest_4389	0.89	-1.4
9,727	+		Psest_4389	0.89	-0.7
9,727	+		Psest_4389	0.89	-0.0
9,727	+		Psest_4389	0.89	-0.5
9,727	+		Psest_4389	0.89	-0.6
9,727	+		Psest_4389	0.89	-2.4
9,727	+		Psest_4389	0.89	-0.8
9,727	+		Psest_4389	0.89	-1.0
9,727	+		Psest_4389	0.89	-0.6
9,727	+				+0.2
9,727	+		Psest_4389	0.89	+0.7
9,727	+		Psest_4389	0.89	-0.5
9,727	+		Psest_4389	0.89	-0.1
9,727	+		Psest_4389	0.89	-0.5
9,727	+		Psest_4389	0.89	-0.0
9,727	+		Psest_4389	0.89	+0.4
9,727	+		Psest_4389	0.89	-1.8
9,727	+		Psest_4389	0.89	-1.5
9,727	+		Psest_4389	0.89	-0.4
9,727	+		Psest_4389	0.89	+0.3
9,727	+		Psest_4389	0.89	+1.4
9,727	+		Psest_4389	0.89	+1.4
9,727	+		Psest_4389	0.89	-0.0
9,727	+		Psest_4389	0.89	-0.5
9,727	+		Psest_4389	0.89	-0.4
9,727	+		Psest_4389	0.89	-1.1
9,727	+		Psest_4389	0.89	+0.4
9,727	+		Psest_4389	0.89	-1.1
9,727	+		Psest_4389	0.89	+0.2
9,727	+		Psest_4389	0.89	+0.2
9,727	+		Psest_4389	0.89	-1.5
9,727	+		Psest_4389	0.89	-1.0
9,727	+		Psest_4389	0.89	+0.3
9,727	+		Psest_4389	0.89	-1.5
9,727	+		Psest_4389	0.89	-0.4
9,727	+		Psest_4389	0.89	-0.6
9,727	+		Psest_4389	0.89	+0.2
9,727	+		Psest_4389	0.89	-1.2
9,727	+		Psest_4389	0.89	-1.2
9,727	+		Psest_4389	0.89	-3.8
9,727	+		Psest_4389	0.89	-0.2
9,727	+		Psest_4389	0.89	-1.8
9,727	+		Psest_4389	0.89	-0.0
9,788	+				+0.7
9,788	+				+0.1
9,788	+				-0.8
9,788	+				-0.5
9,788	+				-0.3
9,788	+				-0.8
9,788	+				-0.9
9,788	+				-0.1
9,788	+				-0.0
9,788	+				-2.0
9,788	+				+0.1
9,788	+				+0.3
9,788	+				-0.6
9,789	-				-0.6
9,789	-				-0.2
9,789	-				-1.8
9,789	-				+0.0
9,789	-				-0.9
9,789	-				-1.3
9,789	-				-3.1
9,789	-				-0.5
9,789	-				-0.8
9,843	+				-0.2
9,843	+				+0.8
9,843	+				-0.1
9,843	+				-0.8
9,844	-				-0.8
9,844	-				-1.1
9,844	-				-0.6
9,844	-				+0.7
9,844	-				-0.2
9,844	-				+0.1
9,844	-				-0.4
9,844	-				+0.3
9,844	-				-0.1
9,861	+				-0.3
9,861	+				-0.0
9,861	+				+0.4
9,861	+				-0.3
9,862	-				+0.1
9,862	-				-1.2
9,862	-				-0.5
9,862	-				-1.4
9,862	-				+0.2
9,875	+				-1.8
9,875	+				+0.8
9,876	-				-2.3
9,889	+				-0.8
9,889	+				+0.8
9,889	+				+0.2
9,889	+				+0.1
9,889	+				+1.1
9,889	+				+0.2
9,889	+				-0.1
9,889	+				+0.7
9,889	+				+0.8
9,889	+				-0.4
9,889	+				+0.8
9,889	+				-0.1
9,889	+				+0.6
9,889	+				+0.9
9,889	+				-0.3
9,889	+				+0.5
9,889	+				+0.1
9,889	+				+0.1
9,889	+				-0.9
9,889	+				+2.5
9,889	+				-0.4
9,889	+				-0.2
9,889	+				-2.2
9,889	+				-0.1
9,889	+				-3.4
9,889	+				-1.9
9,889	+				+0.5
9,890	-				-0.8
9,890	-				-0.4
9,890	-				-0.8
9,890	-				+0.0
9,890	-				+0.4
9,890	-				+1.0
9,890	-				-0.8
9,890	-				+0.8
9,890	-				-2.3
9,890	-				-2.4
9,890	-				-2.4
9,890	-				-1.8
9,890	-				-3.1
9,890	-				-3.1
9,890	-				-2.8
9,890	-				+0.2
9,890	-				-2.9
9,890	-				-0.5
9,890	-				-0.8
9,890	-				-0.8
9,890	-				-0.7
9,890	-				+0.4
9,890	-				-2.8
9,890	-				+0.3
9,890	-				-0.6
9,890	-				-1.5
9,890	-				-0.6
9,890	-				+0.4
9,890	-				+0.2
9,890	-				-0.9
9,890	-				-0.6
9,890	-				-1.2
9,976	+		Psest_4390	0.16	+1.3
9,976	+		Psest_4390	0.16	-0.1
9,976	+		Psest_4390	0.16	-1.0
9,976	+		Psest_4390	0.16	-0.1
9,977	-		Psest_4390	0.16	-1.3
9,977	-		Psest_4390	0.16	-1.0
9,977	-		Psest_4390	0.16	+0.9
9,977	-		Psest_4390	0.16	-1.4
9,977	-		Psest_4390	0.16	-0.8
9,977	-		Psest_4390	0.16	+0.1
9,977	-		Psest_4390	0.16	-0.8
9,977	-		Psest_4390	0.16	-2.8
9,977	-		Psest_4390	0.16	-0.5
9,987	+		Psest_4390	0.19	+1.5
9,987	+		Psest_4390	0.19	-1.4
9,987	+		Psest_4390	0.19	+0.2
9,988	-		Psest_4390	0.19	-0.1
10,317	+				-0.6
10,329	+				+0.4
10,329	+				-1.3
10,342	+				-3.1
10,429	-				-0.2
10,470	+				-0.3
10,471	-				+1.0
10,482	+				-3.0
10,483	-				-2.4
10,683	+				+0.1
10,796	+				+0.6
10,796	+				+0.1
10,796	+				-2.5
10,819	+				+0.2
10,819	+				+0.5
10,819	+				-0.5
10,819	+				-1.3
10,819	+				-1.1
10,819	+				-1.1
10,819	+				-0.6
10,820	-				-0.0
10,820	-				-3.9
10,820	-				+0.4
10,820	-				-1.7