Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04300 and PGA1_c04310 overlap by 19 nucleotides PGA1_c04310 and PGA1_c04320 are separated by 52 nucleotides PGA1_c04320 and PGA1_c04330 are separated by 71 nucleotides PGA1_c04330 and PGA1_c04340 are separated by 0 nucleotides
PGA1_c04300: PGA1_c04300 - putative ATP-binding protein PhnN, at 416,186 to 416,731
_c04300
PGA1_c04310: PGA1_c04310 - Protein of unknown function (DUF1045)., at 416,713 to 417,396
_c04310
PGA1_c04320: PGA1_c04320 - protein PhnM, at 417,449 to 418,591
_c04320
PGA1_c04330: PGA1_c04330 - hypothetical protein, at 418,663 to 419,142
_c04330
PGA1_c04340: PGA1_c04340 - hypothetical protein, at 419,143 to 419,901
_c04340
Position (kb) 417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 416.565 kb on + strand, within PGA1_c04300 at 416.567 kb on + strand, within PGA1_c04300 at 416.573 kb on - strand, within PGA1_c04300 at 416.607 kb on + strand, within PGA1_c04300 at 416.696 kb on + strand at 417.046 kb on + strand, within PGA1_c04310 at 417.054 kb on - strand, within PGA1_c04310 at 417.065 kb on - strand, within PGA1_c04310 at 417.225 kb on + strand, within PGA1_c04310 at 417.390 kb on - strand at 417.402 kb on + strand at 417.405 kb on + strand at 417.434 kb on - strand at 417.458 kb on + strand at 417.458 kb on + strand at 417.458 kb on + strand at 417.480 kb on + strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.488 kb on - strand at 417.552 kb on - strand at 417.576 kb on + strand, within PGA1_c04320 at 417.576 kb on + strand, within PGA1_c04320 at 417.681 kb on - strand, within PGA1_c04320 at 417.735 kb on - strand, within PGA1_c04320 at 417.768 kb on - strand, within PGA1_c04320 at 417.773 kb on - strand, within PGA1_c04320 at 417.890 kb on - strand, within PGA1_c04320 at 417.944 kb on - strand, within PGA1_c04320 at 418.015 kb on - strand, within PGA1_c04320 at 418.031 kb on - strand, within PGA1_c04320 at 418.136 kb on + strand, within PGA1_c04320 at 418.146 kb on + strand, within PGA1_c04320 at 418.218 kb on + strand, within PGA1_c04320 at 418.226 kb on - strand, within PGA1_c04320 at 418.254 kb on + strand, within PGA1_c04320 at 418.254 kb on + strand, within PGA1_c04320 at 418.262 kb on - strand, within PGA1_c04320 at 418.262 kb on - strand, within PGA1_c04320 at 418.275 kb on + strand, within PGA1_c04320 at 418.275 kb on + strand, within PGA1_c04320 at 418.285 kb on + strand, within PGA1_c04320 at 418.293 kb on - strand, within PGA1_c04320 at 418.374 kb on - strand, within PGA1_c04320 at 418.387 kb on - strand, within PGA1_c04320 at 418.387 kb on - strand, within PGA1_c04320 at 418.438 kb on + strand, within PGA1_c04320 at 418.457 kb on - strand, within PGA1_c04320 at 418.473 kb on + strand, within PGA1_c04320 at 418.586 kb on + strand at 418.630 kb on + strand at 418.638 kb on - strand at 418.638 kb on - strand at 418.652 kb on + strand at 418.659 kb on + strand at 418.659 kb on + strand at 418.672 kb on - strand at 418.672 kb on - strand at 418.692 kb on + strand at 418.695 kb on + strand at 418.698 kb on - strand at 418.705 kb on - strand at 418.800 kb on - strand, within PGA1_c04330 at 418.850 kb on - strand, within PGA1_c04330 at 418.859 kb on - strand, within PGA1_c04330 at 418.878 kb on + strand, within PGA1_c04330 at 418.911 kb on - strand, within PGA1_c04330 at 418.948 kb on - strand, within PGA1_c04330 at 419.007 kb on + strand, within PGA1_c04330 at 419.010 kb on + strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.061 kb on + strand, within PGA1_c04330 at 419.070 kb on - strand, within PGA1_c04330 at 419.081 kb on + strand, within PGA1_c04330 at 419.089 kb on - strand, within PGA1_c04330 at 419.116 kb on - strand at 419.176 kb on + strand at 419.176 kb on + strand at 419.188 kb on - strand at 419.244 kb on + strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.453 kb on + strand, within PGA1_c04340 at 419.490 kb on + strand, within PGA1_c04340 at 419.524 kb on - strand, within PGA1_c04340 at 419.557 kb on + strand, within PGA1_c04340
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 416,565 + PGA1_c04300 0.69 +1.8 416,567 + PGA1_c04300 0.70 +0.2 416,573 - PGA1_c04300 0.71 -1.7 416,607 + PGA1_c04300 0.77 +0.1 416,696 + +0.9 417,046 + PGA1_c04310 0.49 -1.4 417,054 - PGA1_c04310 0.50 -2.1 417,065 - PGA1_c04310 0.51 -2.7 417,225 + PGA1_c04310 0.75 -2.2 417,390 - -0.1 417,402 + -0.4 417,405 + +0.5 417,434 - +1.8 417,458 + -0.9 417,458 + +0.5 417,458 + -0.1 417,480 + -0.5 417,488 - -0.5 417,488 - -1.3 417,488 - +0.9 417,488 - -0.6 417,488 - +0.1 417,488 - -2.6 417,488 - -0.6 417,552 - -0.3 417,576 + PGA1_c04320 0.11 -0.5 417,576 + PGA1_c04320 0.11 -2.1 417,681 - PGA1_c04320 0.20 +0.1 417,735 - PGA1_c04320 0.25 +1.0 417,768 - PGA1_c04320 0.28 +0.8 417,773 - PGA1_c04320 0.28 +1.3 417,890 - PGA1_c04320 0.39 -0.1 417,944 - PGA1_c04320 0.43 +1.1 418,015 - PGA1_c04320 0.50 +0.3 418,031 - PGA1_c04320 0.51 +0.1 418,136 + PGA1_c04320 0.60 +1.0 418,146 + PGA1_c04320 0.61 +1.3 418,218 + PGA1_c04320 0.67 -0.5 418,226 - PGA1_c04320 0.68 -0.1 418,254 + PGA1_c04320 0.70 -2.1 418,254 + PGA1_c04320 0.70 -0.8 418,262 - PGA1_c04320 0.71 +0.1 418,262 - PGA1_c04320 0.71 +0.4 418,275 + PGA1_c04320 0.72 -0.6 418,275 + PGA1_c04320 0.72 -1.9 418,285 + PGA1_c04320 0.73 -2.1 418,293 - PGA1_c04320 0.74 -2.1 418,374 - PGA1_c04320 0.81 -1.2 418,387 - PGA1_c04320 0.82 +0.0 418,387 - PGA1_c04320 0.82 -0.3 418,438 + PGA1_c04320 0.87 +1.9 418,457 - PGA1_c04320 0.88 -0.3 418,473 + PGA1_c04320 0.90 +0.7 418,586 + +0.9 418,630 + -0.8 418,638 - -0.2 418,638 - -0.0 418,652 + -0.7 418,659 + +0.9 418,659 + +0.7 418,672 - -0.3 418,672 - +1.9 418,692 + -0.8 418,695 + -0.1 418,698 - +0.9 418,705 - -2.8 418,800 - PGA1_c04330 0.29 -2.4 418,850 - PGA1_c04330 0.39 -1.0 418,859 - PGA1_c04330 0.41 -0.2 418,878 + PGA1_c04330 0.45 +1.3 418,911 - PGA1_c04330 0.52 -0.6 418,948 - PGA1_c04330 0.59 -0.2 419,007 + PGA1_c04330 0.72 -0.9 419,010 + PGA1_c04330 0.72 +0.6 419,015 - PGA1_c04330 0.73 +1.7 419,015 - PGA1_c04330 0.73 -0.0 419,061 + PGA1_c04330 0.83 +0.9 419,070 - PGA1_c04330 0.85 -0.0 419,081 + PGA1_c04330 0.87 -2.4 419,089 - PGA1_c04330 0.89 +1.7 419,116 - +1.1 419,176 + +0.3 419,176 + -0.6 419,188 - +0.3 419,244 + PGA1_c04340 0.13 -0.4 419,395 - PGA1_c04340 0.33 -1.4 419,395 - PGA1_c04340 0.33 +0.3 419,453 + PGA1_c04340 0.41 +1.2 419,490 + PGA1_c04340 0.46 +1.0 419,524 - PGA1_c04340 0.50 +0.7 419,557 + PGA1_c04340 0.55 -1.5
Or see this region's nucleotide sequence