Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4123

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4122 and Psest_4123 overlap by 19 nucleotidesPsest_4123 and Psest_4124 are separated by 248 nucleotidesPsest_4124 and Psest_4125 are separated by 78 nucleotides Psest_4122: Psest_4122 - hypothetical protein, at 4,301,420 to 4,302,700 _4122 Psest_4123: Psest_4123 - Site-specific recombinase XerD, at 4,302,682 to 4,303,740 _4123 Psest_4124: Psest_4124 - hypothetical protein, at 4,303,989 to 4,304,306 _4124 Psest_4125: Psest_4125 - Glycine cleavage system H protein (lipoate-binding), at 4,304,385 to 4,304,849 _4125 Position (kb) 4302 4303 4304Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4301.688 kb on - strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.688 kb on - strand, within Psest_4122at 4301.837 kb on + strand, within Psest_4122at 4301.838 kb on - strand, within Psest_4122at 4301.838 kb on - strand, within Psest_4122at 4301.838 kb on - strand, within Psest_4122at 4301.841 kb on - strand, within Psest_4122at 4301.873 kb on - strand, within Psest_4122at 4301.972 kb on - strand, within Psest_4122at 4301.972 kb on - strand, within Psest_4122at 4302.017 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.074 kb on + strand, within Psest_4122at 4302.075 kb on - strand, within Psest_4122at 4302.075 kb on - strand, within Psest_4122at 4302.075 kb on - strand, within Psest_4122at 4302.116 kb on + strand, within Psest_4122at 4302.116 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.173 kb on + strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.174 kb on - strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.371 kb on + strand, within Psest_4122at 4302.372 kb on - strand, within Psest_4122at 4302.449 kb on + strand, within Psest_4122at 4302.449 kb on + strand, within Psest_4122at 4302.450 kb on - strand, within Psest_4122at 4302.450 kb on - strand, within Psest_4122at 4302.458 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.461 kb on + strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.462 kb on - strand, within Psest_4122at 4302.641 kb on + strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.642 kb on - strandat 4302.707 kb on + strandat 4302.932 kb on - strand, within Psest_4123at 4302.992 kb on + strand, within Psest_4123at 4303.021 kb on + strand, within Psest_4123at 4303.081 kb on + strand, within Psest_4123at 4303.081 kb on + strand, within Psest_4123at 4303.082 kb on - strand, within Psest_4123at 4303.082 kb on - strand, within Psest_4123at 4303.107 kb on - strand, within Psest_4123at 4303.223 kb on + strand, within Psest_4123at 4303.224 kb on - strand, within Psest_4123at 4303.224 kb on - strand, within Psest_4123at 4303.397 kb on + strand, within Psest_4123at 4303.398 kb on - strand, within Psest_4123at 4303.527 kb on + strand, within Psest_4123at 4303.527 kb on + strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.528 kb on - strand, within Psest_4123at 4303.563 kb on + strand, within Psest_4123at 4303.883 kb on + strandat 4303.976 kb on + strandat 4303.976 kb on + strandat 4304.134 kb on + strand, within Psest_4124at 4304.134 kb on + strand, within Psest_4124at 4304.215 kb on + strand, within Psest_4124at 4304.216 kb on - strand, within Psest_4124at 4304.242 kb on + strand, within Psest_4124at 4304.242 kb on + strand, within Psest_4124at 4304.366 kb on + strandat 4304.386 kb on + strandat 4304.444 kb on + strand, within Psest_4125at 4304.444 kb on + strand, within Psest_4125at 4304.444 kb on + strand, within Psest_4125at 4304.445 kb on - strand, within Psest_4125at 4304.445 kb on - strand, within Psest_4125at 4304.445 kb on - strand, within Psest_4125at 4304.445 kb on - strand, within Psest_4125at 4304.715 kb on + strand, within Psest_4125at 4304.715 kb on + strand, within Psest_4125at 4304.716 kb on - strand, within Psest_4125at 4304.716 kb on - strand, within Psest_4125at 4304.726 kb on - strand, within Psest_4125

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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4,301,688 - Psest_4122 0.21 -3.2
4,301,688 - Psest_4122 0.21 -0.2
4,301,688 - Psest_4122 0.21 -0.5
4,301,688 - Psest_4122 0.21 -1.6
4,301,837 + Psest_4122 0.33 -0.5
4,301,838 - Psest_4122 0.33 +0.0
4,301,838 - Psest_4122 0.33 -2.5
4,301,838 - Psest_4122 0.33 -2.0
4,301,841 - Psest_4122 0.33 +1.4
4,301,873 - Psest_4122 0.35 +0.6
4,301,972 - Psest_4122 0.43 -0.1
4,301,972 - Psest_4122 0.43 +1.3
4,302,017 + Psest_4122 0.47 +0.5
4,302,074 + Psest_4122 0.51 -1.3
4,302,074 + Psest_4122 0.51 -1.9
4,302,074 + Psest_4122 0.51 -0.4
4,302,074 + Psest_4122 0.51 -1.3
4,302,074 + Psest_4122 0.51 -0.3
4,302,075 - Psest_4122 0.51 +0.2
4,302,075 - Psest_4122 0.51 +0.7
4,302,075 - Psest_4122 0.51 +0.5
4,302,116 + Psest_4122 0.54 -0.2
4,302,116 + Psest_4122 0.54 -1.4
4,302,173 + Psest_4122 0.59 +0.6
4,302,173 + Psest_4122 0.59 -0.8
4,302,173 + Psest_4122 0.59 +2.2
4,302,173 + Psest_4122 0.59 -0.3
4,302,173 + Psest_4122 0.59 -0.5
4,302,173 + Psest_4122 0.59 -0.6
4,302,174 - Psest_4122 0.59 -0.6
4,302,174 - Psest_4122 0.59 -0.2
4,302,174 - Psest_4122 0.59 +1.8
4,302,174 - Psest_4122 0.59 -0.5
4,302,174 - Psest_4122 0.59 +1.1
4,302,174 - Psest_4122 0.59 +0.1
4,302,371 + Psest_4122 0.74 -0.6
4,302,371 + Psest_4122 0.74 -0.5
4,302,371 + Psest_4122 0.74 +0.0
4,302,371 + Psest_4122 0.74 -1.2
4,302,372 - Psest_4122 0.74 -0.2
4,302,449 + Psest_4122 0.80 -0.1
4,302,449 + Psest_4122 0.80 -0.1
4,302,450 - Psest_4122 0.80 +0.2
4,302,450 - Psest_4122 0.80 -1.1
4,302,458 + Psest_4122 0.81 -2.1
4,302,461 + Psest_4122 0.81 -0.2
4,302,461 + Psest_4122 0.81 -1.7
4,302,461 + Psest_4122 0.81 -1.0
4,302,461 + Psest_4122 0.81 +0.1
4,302,461 + Psest_4122 0.81 -1.0
4,302,461 + Psest_4122 0.81 -0.8
4,302,461 + Psest_4122 0.81 -0.5
4,302,461 + Psest_4122 0.81 +0.2
4,302,461 + Psest_4122 0.81 -0.5
4,302,461 + Psest_4122 0.81 -1.1
4,302,461 + Psest_4122 0.81 -0.7
4,302,461 + Psest_4122 0.81 -0.5
4,302,461 + Psest_4122 0.81 -0.8
4,302,461 + Psest_4122 0.81 +0.2
4,302,462 - Psest_4122 0.81 -0.6
4,302,462 - Psest_4122 0.81 -0.6
4,302,462 - Psest_4122 0.81 -1.0
4,302,462 - Psest_4122 0.81 -0.3
4,302,462 - Psest_4122 0.81 +0.8
4,302,462 - Psest_4122 0.81 -2.8
4,302,462 - Psest_4122 0.81 -0.4
4,302,462 - Psest_4122 0.81 -0.6
4,302,462 - Psest_4122 0.81 -2.2
4,302,641 + -1.7
4,302,642 - -1.4
4,302,642 - -3.3
4,302,642 - +0.3
4,302,642 - -1.7
4,302,642 - -3.5
4,302,707 + +0.3
4,302,932 - Psest_4123 0.24 +0.6
4,302,992 + Psest_4123 0.29 -2.8
4,303,021 + Psest_4123 0.32 -2.5
4,303,081 + Psest_4123 0.38 -0.5
4,303,081 + Psest_4123 0.38 -0.8
4,303,082 - Psest_4123 0.38 -1.7
4,303,082 - Psest_4123 0.38 -0.5
4,303,107 - Psest_4123 0.40 -1.6
4,303,223 + Psest_4123 0.51 +0.3
4,303,224 - Psest_4123 0.51 +0.7
4,303,224 - Psest_4123 0.51 +1.7
4,303,397 + Psest_4123 0.68 -1.6
4,303,398 - Psest_4123 0.68 -1.3
4,303,527 + Psest_4123 0.80 -1.1
4,303,527 + Psest_4123 0.80 -3.4
4,303,528 - Psest_4123 0.80 -2.3
4,303,528 - Psest_4123 0.80 -1.2
4,303,528 - Psest_4123 0.80 -3.7
4,303,528 - Psest_4123 0.80 -1.6
4,303,563 + Psest_4123 0.83 -0.7
4,303,883 + -1.9
4,303,976 + +0.1
4,303,976 + -0.8
4,304,134 + Psest_4124 0.46 -2.3
4,304,134 + Psest_4124 0.46 -2.2
4,304,215 + Psest_4124 0.71 -1.3
4,304,216 - Psest_4124 0.71 -1.7
4,304,242 + Psest_4124 0.80 +0.2
4,304,242 + Psest_4124 0.80 -0.5
4,304,366 + -0.6
4,304,386 + -2.2
4,304,444 + Psest_4125 0.13 +0.8
4,304,444 + Psest_4125 0.13 +0.0
4,304,444 + Psest_4125 0.13 +1.0
4,304,445 - Psest_4125 0.13 -0.8
4,304,445 - Psest_4125 0.13 -0.2
4,304,445 - Psest_4125 0.13 -1.3
4,304,445 - Psest_4125 0.13 -2.5
4,304,715 + Psest_4125 0.71 +1.0
4,304,715 + Psest_4125 0.71 +0.0
4,304,716 - Psest_4125 0.71 -0.3
4,304,716 - Psest_4125 0.71 -2.1
4,304,726 - Psest_4125 0.73 -0.6

Or see this region's nucleotide sequence