Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00440

Experiment: L-Citrulline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00430 and PGA1_65p00440 are separated by 154 nucleotidesPGA1_65p00440 and PGA1_65p00450 are separated by 307 nucleotides PGA1_65p00430: PGA1_65p00430 - putative glycosyl transferase, at 58,298 to 59,341 _65p00430 PGA1_65p00440: PGA1_65p00440 - UDP-glucuronate 5'-epimerase, at 59,496 to 60,506 _65p00440 PGA1_65p00450: PGA1_65p00450 - UDP-glucose 6-dehydrogenase Ugd, at 60,814 to 62,118 _65p00450 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.550 kb on + strand, within PGA1_65p00430at 58.565 kb on - strand, within PGA1_65p00430at 58.633 kb on + strandat 58.633 kb on + strand, within PGA1_65p00430at 58.633 kb on + strand, within PGA1_65p00430at 58.641 kb on - strand, within PGA1_65p00430at 58.646 kb on - strand, within PGA1_65p00430at 58.648 kb on - strand, within PGA1_65p00430at 58.651 kb on + strand, within PGA1_65p00430at 58.736 kb on + strand, within PGA1_65p00430at 58.820 kb on - strand, within PGA1_65p00430at 58.931 kb on + strand, within PGA1_65p00430at 58.939 kb on - strand, within PGA1_65p00430at 59.115 kb on + strand, within PGA1_65p00430at 59.316 kb on + strandat 59.393 kb on - strandat 59.459 kb on + strandat 60.201 kb on + strand, within PGA1_65p00440at 60.503 kb on - strandat 60.524 kb on - strandat 60.524 kb on - strandat 60.529 kb on - strandat 60.531 kb on + strandat 60.764 kb on - strandat 60.798 kb on + strandat 60.828 kb on + strandat 60.886 kb on + strandat 60.894 kb on - strandat 61.149 kb on + strand, within PGA1_65p00450at 61.149 kb on + strand, within PGA1_65p00450at 61.207 kb on + strand, within PGA1_65p00450

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Citrulline (C)
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58,550 + PGA1_65p00430 0.24 +0.6
58,565 - PGA1_65p00430 0.26 -0.9
58,633 + +0.1
58,633 + PGA1_65p00430 0.32 +2.5
58,633 + PGA1_65p00430 0.32 -2.5
58,641 - PGA1_65p00430 0.33 +0.9
58,646 - PGA1_65p00430 0.33 +1.9
58,648 - PGA1_65p00430 0.34 +0.6
58,651 + PGA1_65p00430 0.34 -0.1
58,736 + PGA1_65p00430 0.42 +0.6
58,820 - PGA1_65p00430 0.50 -0.2
58,931 + PGA1_65p00430 0.61 +2.1
58,939 - PGA1_65p00430 0.61 +0.8
59,115 + PGA1_65p00430 0.78 +1.9
59,316 + +0.9
59,393 - -0.9
59,459 + +0.4
60,201 + PGA1_65p00440 0.70 -1.1
60,503 - -0.5
60,524 - -0.3
60,524 - +0.2
60,529 - +0.4
60,531 + -1.0
60,764 - -1.1
60,798 + -1.8
60,828 + -0.5
60,886 + +1.4
60,894 - +1.7
61,149 + PGA1_65p00450 0.26 +2.1
61,149 + PGA1_65p00450 0.26 +2.0
61,207 + PGA1_65p00450 0.30 +2.2

Or see this region's nucleotide sequence