Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00060 and PGA1_65p00070 are separated by 951 nucleotides PGA1_65p00070 and PGA1_65p00080 are separated by 117 nucleotides
PGA1_65p00060: PGA1_65p00060 - putative regulatory protein, LuxR family, at 8,266 to 9,465
_65p00060
PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217
_65p00070
PGA1_65p00080: PGA1_65p00080 - putative glycosyl transferase, at 11,335 to 12,579
_65p00080
Position (kb)
10
11
12 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 9.449 kb on + strand at 9.459 kb on + strand at 9.546 kb on - strand at 9.867 kb on + strand at 9.928 kb on + strand at 9.985 kb on - strand at 10.013 kb on - strand at 10.062 kb on - strand at 10.119 kb on + strand at 10.121 kb on + strand at 10.299 kb on - strand at 10.345 kb on + strand at 10.461 kb on - strand at 10.612 kb on - strand, within PGA1_65p00070 at 10.613 kb on - strand, within PGA1_65p00070 at 10.614 kb on + strand, within PGA1_65p00070 at 10.691 kb on + strand, within PGA1_65p00070 at 11.219 kb on - strand at 11.234 kb on - strand at 11.241 kb on + strand at 11.442 kb on - strand at 11.749 kb on - strand, within PGA1_65p00080 at 11.785 kb on - strand, within PGA1_65p00080 at 11.802 kb on + strand, within PGA1_65p00080 at 11.869 kb on - strand, within PGA1_65p00080 at 12.021 kb on + strand, within PGA1_65p00080 at 12.053 kb on + strand, within PGA1_65p00080 at 12.083 kb on - strand, within PGA1_65p00080 at 12.139 kb on - strand, within PGA1_65p00080 at 12.155 kb on + strand, within PGA1_65p00080
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 9,449 + +0.5 9,459 + +1.5 9,546 - +1.0 9,867 + +1.7 9,928 + -0.9 9,985 - +0.3 10,013 - -0.2 10,062 - -0.5 10,119 + +1.7 10,121 + +1.0 10,299 - -0.6 10,345 + -1.8 10,461 - +1.4 10,612 - PGA1_65p00070 0.24 +0.2 10,613 - PGA1_65p00070 0.24 +2.4 10,614 + PGA1_65p00070 0.25 +2.4 10,691 + PGA1_65p00070 0.34 +0.8 11,219 - -2.8 11,234 - +2.1 11,241 + +0.1 11,442 - +0.9 11,749 - PGA1_65p00080 0.33 +0.3 11,785 - PGA1_65p00080 0.36 -1.3 11,802 + PGA1_65p00080 0.38 +0.7 11,869 - PGA1_65p00080 0.43 -1.0 12,021 + PGA1_65p00080 0.55 +0.4 12,053 + PGA1_65p00080 0.58 -1.5 12,083 - PGA1_65p00080 0.60 +1.0 12,139 - PGA1_65p00080 0.65 +0.2 12,155 + PGA1_65p00080 0.66 -1.6
Or see this region's nucleotide sequence