Experiment: L-Citrulline (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02160 and PGA1_262p02170 are separated by 24 nucleotides PGA1_262p02170 and PGA1_262p02180 are separated by 187 nucleotides PGA1_262p02180 and PGA1_262p02190 are separated by 9 nucleotides PGA1_262p02190 and PGA1_262p02200 overlap by 7 nucleotides
PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914
_262p02160
PGA1_262p02170: PGA1_262p02170 - putative chemoreceptor glutamine deamidase CheD, at 234,939 to 235,493
_262p02170
PGA1_262p02180: PGA1_262p02180 - molybdate-binding periplasmic protein ModA, at 235,681 to 236,496
_262p02180
PGA1_262p02190: PGA1_262p02190 - molybdenum transport system permease protein ModB, at 236,506 to 237,204
_262p02190
PGA1_262p02200: PGA1_262p02200 - molybdenum import ATP-binding protein ModC, at 237,198 to 238,289
_262p02200
Position (kb) 235
236
237 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 234.684 kb on + strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.732 kb on + strand, within PGA1_262p02160 at 234.735 kb on - strand, within PGA1_262p02160 at 234.740 kb on - strand, within PGA1_262p02160 at 234.752 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.980 kb on - strand at 235.060 kb on - strand, within PGA1_262p02170 at 235.095 kb on + strand, within PGA1_262p02170 at 235.133 kb on + strand, within PGA1_262p02170 at 235.278 kb on + strand, within PGA1_262p02170 at 235.560 kb on + strand at 235.641 kb on + strand at 235.644 kb on - strand at 235.696 kb on - strand at 235.715 kb on + strand at 235.723 kb on - strand at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.832 kb on - strand, within PGA1_262p02180 at 235.843 kb on - strand, within PGA1_262p02180 at 235.854 kb on + strand, within PGA1_262p02180 at 235.862 kb on - strand, within PGA1_262p02180 at 235.977 kb on - strand, within PGA1_262p02180 at 236.060 kb on + strand, within PGA1_262p02180 at 236.151 kb on + strand, within PGA1_262p02180 at 236.151 kb on + strand, within PGA1_262p02180 at 236.159 kb on - strand, within PGA1_262p02180 at 236.306 kb on + strand, within PGA1_262p02180 at 236.314 kb on - strand, within PGA1_262p02180 at 236.324 kb on + strand, within PGA1_262p02180 at 236.465 kb on - strand at 236.481 kb on - strand at 236.487 kb on + strand at 236.723 kb on + strand, within PGA1_262p02190 at 236.731 kb on - strand, within PGA1_262p02190 at 237.170 kb on + strand at 237.383 kb on + strand, within PGA1_262p02200 at 237.460 kb on - strand, within PGA1_262p02200
Per-strain Table
Position Strand Gene LocusTag Fraction L-Citrulline (C) remove 234,684 + PGA1_262p02160 0.77 +1.4 234,684 + PGA1_262p02160 0.77 +1.6 234,692 - PGA1_262p02160 0.78 +1.3 234,692 - PGA1_262p02160 0.78 +1.7 234,732 + PGA1_262p02160 0.82 +0.3 234,735 - PGA1_262p02160 0.82 +0.3 234,740 - PGA1_262p02160 0.83 +1.0 234,752 - PGA1_262p02160 0.84 +1.0 234,785 - PGA1_262p02160 0.87 +0.0 234,785 - PGA1_262p02160 0.87 +0.7 234,980 - -1.9 235,060 - PGA1_262p02170 0.22 -0.1 235,095 + PGA1_262p02170 0.28 +0.8 235,133 + PGA1_262p02170 0.35 +1.0 235,278 + PGA1_262p02170 0.61 +0.1 235,560 + -0.7 235,641 + -0.8 235,644 - -1.7 235,696 - -0.4 235,715 + +0.2 235,723 - -1.7 235,832 - PGA1_262p02180 0.19 +0.4 235,832 - PGA1_262p02180 0.19 -0.7 235,832 - PGA1_262p02180 0.19 -3.0 235,843 - PGA1_262p02180 0.20 -2.2 235,854 + PGA1_262p02180 0.21 -2.5 235,862 - PGA1_262p02180 0.22 +0.5 235,977 - PGA1_262p02180 0.36 -0.3 236,060 + PGA1_262p02180 0.46 -0.6 236,151 + PGA1_262p02180 0.58 -1.6 236,151 + PGA1_262p02180 0.58 +0.0 236,159 - PGA1_262p02180 0.59 +0.2 236,306 + PGA1_262p02180 0.77 +0.4 236,314 - PGA1_262p02180 0.78 -0.3 236,324 + PGA1_262p02180 0.79 -0.7 236,465 - -1.3 236,481 - +2.2 236,487 + +1.1 236,723 + PGA1_262p02190 0.31 +1.3 236,731 - PGA1_262p02190 0.32 +0.4 237,170 + -0.4 237,383 + PGA1_262p02200 0.17 -3.1 237,460 - PGA1_262p02200 0.24 +1.4
Or see this region's nucleotide sequence