Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0377 and Psest_0378 are separated by 93 nucleotides Psest_0378 and Psest_0379 are separated by 126 nucleotides
Psest_0377: Psest_0377 - galactarate dehydratase, at 405,056 to 406,621
_0377
Psest_0378: Psest_0378 - Lactate dehydrogenase and related dehydrogenases, at 406,715 to 407,644
_0378
Psest_0379: Psest_0379 - Galactose mutarotase and related enzymes, at 407,771 to 408,661
_0379
Position (kb) 406
407
408 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 405.962 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.037 kb on + strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.038 kb on - strand, within Psest_0377 at 406.183 kb on + strand, within Psest_0377 at 406.523 kb on + strand at 406.523 kb on + strand at 406.523 kb on + strand at 406.523 kb on + strand at 406.524 kb on - strand at 406.524 kb on - strand at 406.524 kb on - strand at 406.526 kb on + strand at 406.527 kb on - strand at 406.527 kb on - strand at 406.527 kb on - strand at 406.688 kb on + strand at 406.688 kb on + strand at 406.722 kb on - strand at 406.722 kb on - strand at 407.154 kb on + strand, within Psest_0378 at 407.154 kb on + strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.155 kb on - strand, within Psest_0378 at 407.219 kb on + strand, within Psest_0378 at 407.220 kb on - strand, within Psest_0378 at 407.522 kb on - strand, within Psest_0378 at 407.677 kb on + strand at 407.908 kb on - strand, within Psest_0379 at 408.199 kb on - strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.254 kb on + strand, within Psest_0379 at 408.255 kb on - strand, within Psest_0379 at 408.255 kb on - strand, within Psest_0379 at 408.376 kb on - strand, within Psest_0379 at 408.506 kb on + strand, within Psest_0379 at 408.507 kb on - strand, within Psest_0379 at 408.507 kb on - strand, within Psest_0379
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 405,962 + Psest_0377 0.58 +0.2 406,037 + Psest_0377 0.63 +2.2 406,037 + Psest_0377 0.63 +1.6 406,037 + Psest_0377 0.63 +2.2 406,037 + Psest_0377 0.63 +0.9 406,037 + Psest_0377 0.63 +0.9 406,037 + Psest_0377 0.63 +0.8 406,038 - Psest_0377 0.63 +0.0 406,038 - Psest_0377 0.63 -1.6 406,038 - Psest_0377 0.63 +0.4 406,038 - Psest_0377 0.63 -1.8 406,038 - Psest_0377 0.63 +0.8 406,038 - Psest_0377 0.63 +0.3 406,038 - Psest_0377 0.63 +0.0 406,038 - Psest_0377 0.63 -0.3 406,038 - Psest_0377 0.63 +0.1 406,038 - Psest_0377 0.63 -0.4 406,038 - Psest_0377 0.63 +2.8 406,183 + Psest_0377 0.72 +0.8 406,523 + +1.1 406,523 + +0.6 406,523 + -0.8 406,523 + +0.8 406,524 - +1.5 406,524 - +0.6 406,524 - +0.5 406,526 + +2.5 406,527 - +0.3 406,527 - +0.3 406,527 - +0.4 406,688 + +1.6 406,688 + +1.2 406,722 - +0.6 406,722 - +0.7 407,154 + Psest_0378 0.47 +1.2 407,154 + Psest_0378 0.47 +4.7 407,155 - Psest_0378 0.47 -0.1 407,155 - Psest_0378 0.47 +1.2 407,219 + Psest_0378 0.54 +2.2 407,220 - Psest_0378 0.54 +0.2 407,522 - Psest_0378 0.87 -0.8 407,677 + +1.7 407,908 - Psest_0379 0.15 +1.2 408,199 - Psest_0379 0.48 -1.1 408,254 + Psest_0379 0.54 +0.6 408,254 + Psest_0379 0.54 +0.4 408,254 + Psest_0379 0.54 +0.6 408,254 + Psest_0379 0.54 +1.0 408,254 + Psest_0379 0.54 +1.7 408,255 - Psest_0379 0.54 +1.6 408,255 - Psest_0379 0.54 +1.2 408,376 - Psest_0379 0.68 +2.2 408,506 + Psest_0379 0.82 +1.2 408,507 - Psest_0379 0.83 +1.6 408,507 - Psest_0379 0.83 -1.0
Or see this region's nucleotide sequence